Abstract
This study aimed to explore the prognostic and predictive value of autophagy-related lncRNAs in papillary thyroid carcinoma (PTC). The expression data of autophagy-related genes and lncRNAs of the PTC patients were obtained from TCGA database. Autophagy-related-differentially expressed lncRNAs (DElncs) were identified and used to establish the lncRNAs signature predicting patients’ progression-free interval (PFI) in the training cohort. Its performance was assessed in the training cohort, validation cohort, and entire cohort. Effects of the signature on I-131 therapy were also explored. We identified 199 autophagy-related-DElncs and constructed a novel six-lncRNAs signature was constructed based on these lncRNAs. This signature had a good predictive performance and was superior to TNM stages and previous clinical risk scores. I-131 therapy was found to be associated with favorable prognosis in patients with high-risk scores but not those with low-risk scores. Gene set enrichment analysis suggested that a series of hallmark gene sets were enriched in the high-risk subgroup. Single-cell RNA sequencing analysis suggested that the lncRNAs were mainly expressed in thyroid cells but not stromal cells. In conclusion, our study constructed a well-performed six-lncRNAs signature to predict PFI and I-131 therapy benefits in PTC.
1 Introduction
The incidence of thyroid cancers (TC), the most frequent endocrine tumors, has been increasing during the past decades [1,2], largely due to the progressively available and sensitive use of diagnostic technologies [3,4]. Differentiated thyroid cancer (DTC), originating from follicular epithelial cells [5], accounts for over 95% of all TC. Most DTC is papillary thyroid cancer (PTC; 85–90%) [6,7]. PTC typically responds well to standard therapy, including radical surgery, radioactive iodine (I-131) therapy, and endocrine therapy, and has a relatively good prognosis with a more than 90% 10-year survival rate. However, some patients experience recurrence after initial treatment [8]. Therefore, it is crucial to develop novel biomarkers or risk models to accurately evaluate the prognosis of PTC to ensure patients with low risk are not over-treated while those with high risk receive appropriate aggressive treatment.
Autophagy, a critical intracellular process, degrades or removes damaged or denatured proteins and dysfunctional organelles in lysosomes and is essential to maintain cellular homeostasis, metabolism, and survival [9,10]. Abnormal autophagy is involved in various diseases and associated with cancer occurrence, development, and metastasis although its definitive role in carcinogenesis and underlying mechanisms are inconclusive [11]. It plays either a protective role by inhibiting tumor development in the early stages or a detrimental role by promoting tumor progression in advanced stages of cancers. Additionally, autophagy can enhance tumor resistance to chemotherapy or radiotherapy [12]. In thyroid cancer, some studies have revealed autophagy can regulate tumor development and dedifferentiation and is involved in drug resistance. Kim et al. found autophagy-related proteins, LC3A, LC3B, p62, and BNIP-3, differ according to thyroid cancer subtypes [13]. Plantinga et al. found autophagy activity is associated with clinical response to radioiodine therapy potentially via maintaining tumor cell differentiation in non-medullary thyroid cancer [14]. Wang et al. found combining vemurafenib and autophagy inhibitors exerts more pronounced tumor suppression in thyroid cancer [15]. Tesselaar et al. found that digitalis-like compounds, the autophagy activators, can restore human sodium-iodide symporter (hNIS) expression and iodide uptake in thyroid cancer cells and may be a promising strategy to overcome radioactive iodide resistance [16].
Long non-coding RNAs (lncRNAs) function in a series of cellular processes in cancers such as cell proliferation, autophagy, and genomic stability by regulating gene expression via diverse mechanisms [17]. The role of lncRNAs in thyroid cancer has been revealed gradually. In thyroid cancer, previous studies have revealed that some lncRNAs are associated with cell proliferation, apoptosis, and autophagy [18]. For example, lncRNA OIP5-AS1, regulated by METTL14, can promote PTC progression by miR-98/ADAMTS8 signaling [19]. LncRNA FER1L4 can promote PTC malignancy by targeting miR-612/CDH4 axis [20]. LncRNA MIAT can promote PTC invasion via miR-150/EZH2 pathway [21]. LncRNA TNRC6C-AS1 can inhibit cell proliferation and promote apoptosis and autophagy via Hippo signaling pathway in thyroid cancer cells [22]. LncRNA MALAT1 knockdown can inhibit tumor migration and invasion while increasing autophagy via miR-200a-3p/FOXA1 axis in thyroid cancer cells [23]. Considering the molecular and clinical value of autophagy and lncRNAs in thyroid cancer, we here aimed to establish an effective autophagy-related lncRNAs risk signature to predict progression-free interval (PFI) in PTC patients.
2 Methods and materials
2.1 Data collection and processing
The workflow of this study is presented in Figure 1. The expression data including mRNA and lncRNA of PTC patients were got from TCGA database (https://www.cbioportal.org) [24]. This dataset consisted of 507 subjects, 510 tumor samples, and 58 adjacent normal tissue samples. Only the patients with clinical data and follow-up time/PFI ≥ 30 days were included. Overall, 498 cases were finally included and were randomly split into a training cohort (n = 299) and a validation cohort (n = 199). A total 222 autophagy-related genes (ARGs) were obtained from the Human Autophagy Database (HADb, http://autophagy.lu/clustering/index.html), which collected those genes from the literature. LncRNAs and ARGs mRNAs expression were extracted according to GENCODE annotations (https://www.gencodegenes.org). LncRNAs with zero expression levels in more than 50% of samples were excluded. Clinical variables including age, gender, race, cancer history, thyroid gland disorder history, histological types, TNM stages, T stage, N stage, M stage, tumor location, residual tumor, American Thyroid Association (ATA) risk stratification, the distant metastasis, patient age, completeness of resection, local invasion, and tumor size (MACIS) scores were collected. The methods of assessing the tumors with ATA risk stratification and MACIS scores have been described in the previous report [24] and are introduced in the Supplementary data. We also re-evaluated the tumors based on the methods. Additionally, BRAF mutation and telomerase reverse transcriptase (TERT) promoter mutation status information were extracted, which have been reported to be associated with prognosis in TC [25]. Patients’ progression-free survival (PFS) and overall survival (OS) were also extracted.

Flowchart.
2.2 Screening of the differentially expressed ARGs-related lncRNAs
We used the “Limma” package to identify the differentially expressed lncRNAs (DElncs) between tumor samples and control samples with the thresholds of fold change (FC) >1.5 or <1/1.5 and false discovery rate (FDR) <0.05 [26]. Subsequently, the correlation coefficient (R 2) between ARGs and DElncs was calculated by Pearson correlation analyses. The lncRNAs with R 2 > 0.25 and P < 0.001 were defined as autophagy-related lncRNAs.
2.3 Construction of autophagy-related lncRNAs signature
Univariate Cox regression analyses were performed to explore the associations of the autophagy-related DElncs with PFI. The autophagy-related DElncs that were associated with PFI in both the entire cohort and the training cohort (P < 0.1) were used as candidates to build the prognostic signature in the training cohort. The candidate DElncs were imputed into LASSO Cox regression analysis. The core autophagy-related DElncs tightly related to PFI were obtained when the optimal lambda value was achieved. The selected lncRNAs were then subjected to stepwise multivariate Cox regression analysis to build the autophagy-related lncRNAs risk signature. Each patient’s risk score was calculated by a linear combination of multiplying each lncRNA expression and the corresponding Cox regression coefficient. The patients were stratified into high-risk and low-risk groups by the median value. The PFI difference between the two groups was compared by Kaplan–Meier curves. Multivariate Cox regression analysis was performed to evaluate the independent prognostic value of the risk scores by adjusting the potential confounders. For the adjusted model I, the confounders was selected if they changed the effect estimate of the risk scores on PFI by more than 10% or were significantly associated with PFI. For the adjusted model II, the confounders in the adjusted model I and the remaining demographic data were adjusted. In addition, the area under the time-dependent ROC curves (AUC), as well as Harrell’s concordance index (C-index), were utilized to assess the predictive value of the autophagy-related lncRNAs risk signature. Validation was performed in the validation cohort and the entire cohort. The predictive performance of the risk model was also compared with TNM stages, ATA risk stratification, and MACIS scores by comparing their C-indices in the patients without missing values.
2.4 Association of the risk score with I-131 therapy efficacy
The association of the risk score with I-131 therapy efficacy was also explored with PFI as the primary endpoint and PFS and OS as the secondary endpoints. The patients were first divided into high and low risk with the optimal cutoff value, which was obtained based on the minimum P-value of the interaction test in univariate Cox analysis with PFI as the primary endpoint. I-131 therapy efficacy was investigated in patients with high or low risk by Kaplan–Meier curves with log-rank tests.
2.5 Gene set enrichment analysis (GSEA)
GSEA (version 3.0) was executed to assess the significantly different hallmark gene sets between different risk subgroups. The enriched gene sets whose/normalized enrichment score (NES)/> 1, nominal P-value <0.05, and FDR q-value <0.05 were treated as significant.
2.6 Single-cell RNA sequencing data analysis
The scRNA-seq data of 22 fresh surgical samples from six primary PTC tumors, six paired adjacent normal tissues, eight metastatic lymph nodes (LNs, including three recurrent LNs), and two subcutaneous metastatic loci were extracted from the GSE184362 dataset stored in the Gene Expression Omnibus (GEO) database [27]. Further analyses were performed with the R package, “Seurat,” using the standard data analysis pipeline [28]. Briefly, cells with low quality (the proportion of mitochondrial genes counts >10%, UMIs <500 or >5,000) were first removed; then the cell gene expression matrix was normalized and scaled with the default parameters; subsequently, the top 2,000 highly variable genes were identified by the FindVariableFeatures() function for the principal component analysis; fourth, the functions, FindNeighbors() and FindClusters() were utilized for cell clustering at a resolution of 0.4; next, the uniform manifold approximation and projection (UMAP) were used for visualization; cell markers provided in the previous report were used to annotate the cell clusters [27]. The cells with positive expression of lncRNAs of interest were assigned to the positive group and the other cells to the negative group. The differentially expressed genes between the two groups were identified through the FindAllMarkers() function, ranked by the log FC, and subjected to GSEA to explore the potential mechanisms.
2.7 Statistical analysis
R software v3.4.3 was utilized to perform all statistical analyses. The categorical variables were compared by chi-square tests or Fisher’s exact tests while the continuous variables were compared by Wilcox tests or Kruskal–Wallis tests. Kaplan–Meier curves were plotted to assess the prognosis differences between different groups stratified by risk scores and I-131 therapy efficacy. Cox regression analyses were carried out to identify lncRNAs that were associated with PFI. P < 0.05 was regarded as statistically significant unless otherwise stated.
-
Ethics statement: The current study has been approved by the Institutional Review Board of Tianjin Union Medical Center of Nankai University (2021-B34).
3 Results
3.1 Identification of differentially expressed autophagy-related lncRNAs
The mRNA expression data of PTC tissues and adjacent normal tissues were obtained from the TCGA database. A total of 222 ARGs were generated from the HADb database and their expression data were extracted. About 14,822 lncRNAs were also extracted and 7,425 lncRNAs whose expressions were non-zero in more than 50% of samples were finally included. DElncs were identified between PTC and normal thyroid tissues via the “Limma” package. Based on the cutoff criteria, 262 DElncs with 178 lncRNAs downregulated and 84 lncRNAs upregulated were found. The volcano plot and heatmap for these 262 DElncs in tumor and adjacent tissues are displayed in Figure 2. Pearson correlation analyses were performed between these lncRNAs and 222 ARGs. Finally, 199 autophagy-related DElncs were attained based on the criteria of R 2 > 0.25 and P < 0.001.

Comparison of lncRNAs expression in PTC tissues with adjacent tissues. (a) Volcano plot. The top ten DElncs were indicated based on the FDR, which were all downregulated. (b) Heatmap plot. Note: lfc, log2(FC).
3.2 Establishment of autophagy-related lncRNA risk signature
Four hundred ninety-eight PTC patients were included and randomly divided into a training cohort (n = 299) and a validation cohort (n = 199). The clinical characteristics of the two cohorts were similar (Table 1). Univariate Cox regression analyses were performed to explore the associations of the autophagy-related DElncs with PFI in the entire cohort and training cohort. The autophagy-related DElncs that were associated with PFI in both the entire and training cohort (P < 0.1) were imputed into LASSO Cox regression analysis in the training cohort. Thirteen core lncRNAs tightly related to PFI were obtained at optimal lambda value (Figure 3). The selected lncRNAs were then subjected to stepwise multivariate Cox regression analysis. Finally, an autophagy-related lncRNAs risk signature consisting of six lncRNAs was constructed by multiplying each lncRNA expression and the corresponding Cox regression coefficient (Table 2). The six lncRNAs were co-expressed with 31 ARGs (R 2 > 0.25; Figure 4).
Comparison of the clinical characteristics between the training and validation cohorts
Cohort | Training | Validation | P-value |
---|---|---|---|
N | 299 | 199 | |
Age (years) | 47.0 ± 15.4 | 48.0 ± 16.4 | 0.483 |
MACIS scores (N = 486, unknown = 12) | 5.4 ± 1.5 | 5.4 ± 1.6 | 0.585 |
Gender | 0.991 | ||
Female | 218 (72.9%) | 145 (72.9%) | |
Male | 81 (27.1%) | 54 (27.1%) | |
Race | 0.553 | ||
White | 197 (65.9%) | 132 (66.3%) | |
Asian | 35 (11.7%) | 16 (8.0%) | |
Others | 16 (5.4%) | 12 (6.0%) | |
Unknown | 51 (17.1%) | 39 (19.6%) | |
Cancer history | 0.832 | ||
No | 278 (93.0%) | 186 (93.5%) | |
Yes | 21 (7.0%) | 13 (6.5%) | |
Thyroid gland disorder history | 0.489 | ||
No | 162 (54.2%) | 113 (56.8%) | |
Yes | 98 (32.8%) | 67 (33.7%) | |
Unknown | 39 (13.0%) | 19 (9.5%) | |
Histological types | 0.838 | ||
Classical/usual | 211 (70.6%) | 141 (70.9%) | |
Follicular | 59 (19.7%) | 42 (21.1%) | |
Tall cell | 24 (8.0%) | 12 (6.0%) | |
Others | 5 (1.7%) | 4 (2.0%) | |
TNM stage | 0.770 | ||
Stage I | 168 (56.2%) | 111 (55.8%) | |
Stage II | 29 (9.7%) | 23 (11.6%) | |
Stage III | 68 (22.7%) | 43 (21.6%) | |
Stage IV | 32 (10.7%) | 22 (11.1%) | |
Unknown | 2 (0.7%) | 0 (0.0%) | |
T stage | 0.867 | ||
T1 | 86 (28.8%) | 56 (28.1%) | |
T2 | 93 (31.1%) | 69 (34.7%) | |
T3 | 104 (34.8%) | 66 (33.2%) | |
T4 | 15 (5.0%) | 7 (3.5%) | |
TX | 1 (0.3%) | 1 (0.5%) | |
N stage | 0.245 | ||
N0 | 133 (44.5%) | 95 (47.7%) | |
N1 | 140 (46.8%) | 80 (40.2%) | |
NX | 26 (8.7%) | 24 (12.1%) | |
M stage | 0.773 | ||
M0 | 172 (57.5%) | 109 (54.8%) | |
M1 | 5 (1.7%) | 4 (2.0%) | |
MX | 121 (40.5%) | 86 (43.2%) | |
Unknown | 1 (0.3%) | 0 (0.0%) | |
Tumor location | 0.921 | ||
Left lobe | 109 (36.5%) | 65 (32.7%) | |
Right lobe | 123 (41.1%) | 87 (43.7%) | |
Bilateral | 50 (16.7%) | 36 (18.1%) | |
Isthmus | 13 (4.3%) | 9 (4.5%) | |
Unknown | 4 (1.3%) | 2 (1.0%) | |
Residual tumor | 0.198 | ||
R0 | 226 (75.6%) | 154 (77.4%) | |
R1 | 38 (12.7%) | 14 (7.0%) | |
R2 | 3 (1.0%) | 1 (0.5%) | |
RX | 16 (5.4%) | 14 (7.0%) | |
Unknown | 16 (5.4%) | 16 (8.0%) | |
ATA risk stratification | 0.166 | ||
Low | 97 (32.4%) | 73 (36.7%) | |
Intermediate | 179 (59.9%) | 112 (56.3%) | |
High | 20 (6.7%) | 8 (4.0%) | |
Unknown | 3 (1.0%) | 6 (3.0%) | |
BRAF mutation | 0.191 | ||
No | 115 (38.5%) | 82 (41.2%) | |
Yes | 178 (59.5%) | 108 (54.3%) | |
Unknown | 6 (2.0%) | 9 (4.5%) | |
TERT mutation | 0.862 | ||
No | 202 (67.6%) | 138 (69.3%) | |
Yes | 23 (7.7%) | 13 (6.5%) | |
Unknown | 74 (24.7%) | 48 (24.1%) |
Note: ATA, American Thyroid Association.

Screening of the core autophagy-related lncRNAs associated with PFI by LASSO COX regression analysis. (a) LASSO coefficient of the lncRNAs by 10-fold cross-validation. (b) Partial likelihood deviance with corresponding log(λ) values at the minimal deviance.
Information of the lncRNAs in the autophagy-related lncRNAs risk model for predicting PFI of patients with papillary thyroid carcinoma
ENSG ID | Symbol | Chromosome | Gene start (bp) | Gene end (bp) | Coefficient | P-value |
---|---|---|---|---|---|---|
ENSG00000254153 | CTA-398F10.2 | 8 | 8456909 | 8461337 | −1.892 | 0.002 |
ENSG00000232453 | RP4-794H19.1 | 1 | 58882868 | 58931897 | 1.178 | 0.015 |
ENSG00000250073 | RP11-677M14.3 | 11 | 124759129 | 124766119 | −1.381 | 0.009 |
ENSG00000259264 | RP11-60L3.1 | 15 | 74202705 | 74221555 | 0.440 | 0.037 |
ENSG00000229116 | RP11-20J15.3 | 10 | 44282489 | 44293998 | −0.840 | 0.003 |
ENSG00000259042 | AE000661.50 | 14 | 22415362 | 22418657 | −0.544 | 0.074 |

Correlation of the selected six lncRNAs with ARGs.
3.3 Validation of the autophagy-related lncRNA risk signature
The prognostic performance of the autophagy-related lncRNAs risk model was further assessed by Kaplan–Meier plotting curves and time-dependent ROC curves in the training, validation, and entire cohorts. The patients in these cohorts were split into high-risk and low-risk groups with the median value of the risk scores. In the training cohort, the risk curve and the scatterplot showed that the low-risk group had lower risk scores and progression rates (Figure 5a). The corresponding expression profiles of the six autophagy-related lncRNAs were also visualized by heatmap (Figure 5a). The AUCs of 1-, 3-, and 5-year PFI were 0.78, 0.79, and 0.76, respectively (Figure 5b). Kaplan–Meier curve indicated that patients with low risk exerted more favorable PFI than those with high risk (P < 0.0001, Figure 5c). In the validation cohort, the risk score distribution, progression status, and the corresponding expression profiles of the six lncRNAs were also determined (Figure 6a). The AUCs of 1-, 3-, and 5-year PFI were 0.64, 0.71, and 0.79, respectively (Figure 6b). Kaplan–Meier curve showed that patients with low risk exerted more favorable PFI than those with high risk (P = 0.0033, Figure 6c). Similar results were identified in the entire cohort (Figure 7). The Harrell’s C-indices (95% CIs) of the six lncRNAs risk signature were 0.776 (0.692, 0.861), 0.717 (0.593, 0.841), and 0.756 (0.686, 0.825) in the training, validation, and entire cohorts, respectively. The predictive performance of the lncRNAs risk model was also compared with TNM stages, ATA risk stratification, and MACIS scores. In the patients without missing values (n = 480), Harrell’s C-index of the six lncRNAs signature was 0.759 and bigger than that of TNM stages, ATA risk stratification, and MACIS scores, whose C-indices were 0.631, 0.651, and 0.646, respectively (all P < 0.05; Table S1). Collectively, these results revealed that the risk signature exhibited good performance to predict the PFI of the PTC patients, and was superior to TNM stages, ATA risk stratification, and MACIS scores.

Predictive performance of the six autophagy-related lncRNAs signature in the training cohort. (a) Risk scores, PFI/progression status, and expression heatmap. (b) Time-dependent ROC curves for predicting 1-, 3-, and 5-year PFI based on the risk scores. (c) Kaplan–Meier curves of the patients with high and low-risk scores, which were divided by the median value.

Predictive performance of the six autophagy-related lncRNAs signature in the validation cohort. (a) Risk scores, PFI/progression status, and expression heatmap. (b) Time-dependent ROC curves for predicting 1-, 3-, and 5-year PFI based on the risk scores. (c) Kaplan–Meier curves of the patients with high and low-risk scores, which were divided by the median value of the risk scores.

Predictive performance of the six autophagy-related lncRNAs signature in the entire cohort. (a) Risk scores, PFI/progression status, and expression heatmap. (b) Time-dependent ROC curves for predicting 1-, 3-, and 5-year PFI based on the risk scores. (c) Kaplan–Meier curves of the patients with high and low-risk scores, which were divided by the median value of the risk scores.
Finally, multivariate analysis results suggested that, whether in the training, validation, or entire cohorts, the six-lncRNAs risk scores (serve as a continuous variable) were an independent prognostic factor (Table 3). When the risk scores were equally split into two groups or three groups, high-risk scores were also identified as an independent prognostic factor.
Univariate/multivariate COX regression analyses of the associations of autophagy-related lncRNAs risk scores with the PFI of patients with papillary thyroid carcinoma
Cohort/subgroups | Non-adjusted | Adjust I | Adjust II | |||
---|---|---|---|---|---|---|
HR (95% CI) | P-value | HR (95% CI) | P-value | HR (95% CI) | P-value | |
Risk scores as a continuous variable | ||||||
Training cohort | 2.706 (1.935, 3.783) | <0.001 | 2.532 (1.690, 3.792) | <0.001 | 2.544 (1.699, 3.807) | <0.001 |
Validation cohort | 1.794 (1.195, 2.694) | 0.005 | 2.125 (1.157, 3.902) | 0.015 | 2.575 (1.325, 5.004) | 0.005 |
Entire cohort | 2.303 (1.768, 2.999) | <0.001 | 2.082 (1.552, 2.794) | <0.001 | 2.128 (1.589, 2.851) | <0.001 |
Risk scores as a categorical variable (two groups) | ||||||
Training cohort | ||||||
Low | 1 | 1 | 1 | |||
High | 11.285 (3.449, 36.923) | <0.001 | 9.191 (2.685, 31.469) | <0.001 | 10.898 (3.078, 38.581) | <0.001 |
Validation cohort | ||||||
Low | 1 | 1 | 1 | |||
High | 5.233 (1.503, 18.218) | 0.009 | 5.917 (1.375, 25.471) | 0.017 | 9.547 (1.774, 51.381) | 0.009 |
Entire cohort | ||||||
Low | 1 | 1 | 1 | |||
High | 8.061 (3.439, 18.897) | <0.001 | 6.490 (2.694, 15.632) | <0.001 | 7.089 (2.917, 17.226) | <0.001 |
Risk scores as a categorical variable (three groups) | ||||||
Training cohort | 1 | 1 | 1 | |||
Low | 1 | 1 | 1 | |||
Medium | 4.676 (1.010, 21.644) | 0.049 | 4.683 (0.977, 22.454) | 0.054 | 5.226 (1.063, 25.698) | 0.042 |
High | 12.279 (2.895, 52.088) | 0.001 | 9.692 (2.116, 44.392) | 0.003 | 11.256 (2.403, 52.714) | 0.002 |
Validation cohort | ||||||
Low | 1 | 1 | 1 | |||
Medium | 4.585 (0.512, 41.054) | 0.173 | 4.130 (0.333, 51.205) | 0.270 | 3.224 (0.261, 39.860) | 0.362 |
High | 13.257 (1.723, 101.986) | 0.013 | 20.141 (1.777, 228.324) | 0.015 | 34.465 (2.903, 409.094) | 0.005 |
Entire cohort | ||||||
Low | 1 | 1 | 1 | |||
Medium | 7.013 (1.582, 31.082) | 0.010 | 6.771 (1.495, 30.673) | 0.013 | 7.503 (1.629, 34.550) | 0.010 |
High | 20.216 (4.867, 83.973) | <0.001 | 16.905 (3.920, 72.898) | <0.001 | 19.531 (4.428, 86.148) | <0.001 |
Note: adjust I: adjust for age; histological types: TNM stage, T stage, N stage, M stage; tumor location: BRAF mutation and TERT mutation; adjust II: adjust for age, gender, race; histological types: TNM stage, T stage, N stage, M stage; tumor location: BRAF mutation and TERT mutation; HR, hazard ratio; CI, confidence interval.
3.4 Associations of the risk scores with clinical features and BRAF/TERT mutation status in PTC patients
The associations of the six-lncRNAs risk scores with patients’ clinical features and BRAF/TERT mutation status were analyzed in the entire cohort. Patients were divided into high and low-risk groups by the median value and the features in different risk groups were compared. The results suggested that the patients with high risk had a higher prevalence of tall cell carcinomas, advanced stages, high ATA risk stratification, and higher TERT promoter mutation rate (Table 4). Comparisons of the original risk scores in patients with different features suggested patients with tall cell carcinomas (Figure 8a), III–IV stages (Figure 8b), high ATA risk stratification (Figure 8c), mutated BRAF (Figure 8d), or mutated TERT promoter (Figure 8e) had higher risk scores. The lncRNAs signature risk scores were also found to be positively correlated with MACIS scores (Figure 8f).
Comparison of the clinical characteristics between the patients with low and high-risk scores
LncRNA signature scores | Low | High | P-value |
---|---|---|---|
N | 249 | 249 | |
Age (years) | 47.0 ± 15.3 | 47.7 ± 16.3 | 0.622 |
MACIS scores (N = 486) | 5.2 ± 1.4 | 5.6 ± 1.6 | <0.001 |
Gender | 0.614 | ||
Female | 179 (71.9%) | 184 (73.9%) | |
Male | 70 (28.1%) | 65 (26.1%) | |
Race | 0.536 | ||
White | 160 (64.3%) | 169 (67.9%) | |
Asian | 29 (11.6%) | 22 (8.8%) | |
Others | 12 (4.8%) | 16 (6.4%) | |
Unknown | 48 (19.3%) | 42 (16.9%) | |
Cancer history | 0.286 | ||
No | 229 (92.0%) | 235 (94.4%) | |
Yes | 20 (8.0%) | 14 (5.6%) | |
Thyroid gland disorder history | 0.174 | ||
No | 128 (51.4%) | 147 (59.0%) | |
Yes | 92 (36.9%) | 73 (29.3%) | |
Unknown | 29 (11.6%) | 29 (11.6%) | |
Histological types | 0.009 | ||
Classical/usual | 181 (72.7%) | 171 (68.7%) | |
Follicular | 56 (22.5%) | 45 (18.1%) | |
Tall cell | 9 (3.6%) | 27 (10.8%) | |
Others | 3 (1.2%) | 6 (2.4%) | |
TNM stage | 0.022 | ||
Stage I | 152 (61.0%) | 127 (51.0%) | |
Stage II | 27 (10.8%) | 25 (10.0%) | |
Stage III | 50 (20.1%) | 61 (24.5%) | |
Stage IV | 18 (7.2%) | 36 (14.5%) | |
Unknown | 2 (0.8%) | 0 (0.0%) | |
T stage | <0.001 | ||
T1 | 96 (38.6%) | 46 (18.5%) | |
T2 | 79 (31.7%) | 83 (33.3%) | |
T3 | 68 (27.3%) | 102 (41.0%) | |
T4 | 5 (2.0%) | 17 (6.8%) | |
TX | 1 (0.4%) | 1 (0.4%) | |
N stage | 0.062 | ||
N0 | 124 (49.8%) | 104 (41.8%) | |
N1 | 97 (39.0%) | 123 (49.4%) | |
NX | 28 (11.2%) | 22 (8.8%) | |
M stage | 0.281 | ||
M0 | 141 (56.6%) | 140 (56.2%) | |
M1 | 2 (0.8%) | 7 (2.8%) | |
MX | 105 (42.2%) | 102 (41.0%) | |
Unknown | 1 (0.4%) | 0 (0.0%) | |
Tumor location | 0.005 | ||
Left lobe | 96 (38.6%) | 78 (31.3%) | |
Right lobe | 100 (40.2%) | 110 (44.2%) | |
Bilateral | 47 (18.9%) | 39 (15.7%) | |
Isthmus | 3 (1.2%) | 19 (7.6%) | |
Unknown | 3 (1.2%) | 3 (1.2%) | |
Residual tumor | 0.253 | ||
R0 | 195 (78.3%) | 185 (74.3%) | |
R1 | 19 (7.6%) | 33 (13.3%) | |
R2 | 2 (0.8%) | 2 (0.8%) | |
RX | 18 (7.2%) | 12 (4.8%) | |
Unknown | 15 (6.0%) | 17 (6.8%) | |
ATA risk stratification | <0.001 | ||
Low | 108 (43.4%) | 62 (24.9%) | |
Intermediate | 132 (53.0%) | 159 (63.9%) | |
High | 6 (2.4%) | 22 (8.8%) | |
Unknown | 3 (1.2%) | 6 (2.4%) | |
BRAF mutation | 0.157 | ||
No | 109 (43.8%) | 88 (35.3%) | |
Yes | 133 (53.4%) | 153 (61.4%) | |
Unknown | 7 (2.8%) | 8 (3.2%) | |
TERT promoter mutation | 0.017 | ||
No | 179 (71.9%) | 161 (64.7%) | |
Yes | 10 (4.0%) | 26 (10.4%) | |
Unknown | 60 (24.1%) | 62 (24.9%) |
Note: ATA, American Thyroid Association.

Comparison of the risk scores in patients with different features. (a) Comparison of the risk scores in patients with different histological types. (b) Comparison of the risk scores in patients with different TNM stages. (c) Comparison of the risk scores in patients with different ATA risk stratification. (d) Comparison of the risk scores in patients with or without BRAF mutation. (e) Comparison of the risk scores in patients with or without TERT mutation (f) Correlation of the risk scores and MACIS scores. Note: ns, not significant; **, P < 0.01; ***, P < 0.001; ****, P < 0.0001.
3.5 Association of the risk scores with I-131 therapy benefits
Of the 390 patients, 215 (60%) with treatment information received postoperative I-131 therapy. No significant association of I-131 therapy with patients’ PFI was identified (P = 0.51; Figure 9a). However, when the patients were equally split into three groups by the LncRNAs signature risk scores, we observed a trend that I-131 therapy was associated with favorable PFI in the high-risk group while being associated with poor PFI in the low-risk group (data not shown), suggesting that the patients with high-risk scores but not those with low-risk scores might get benefit from I-131 therapy. To identify the patients favorable to I-131 therapy, the patients were divided into two groups (unfavorable group and favorable group) by a series of cutoff values, and the optimal cutoff value was selected by minimal P-value for interaction tests in univariate Cox analyses. One hundred ten (28%) and 280 (72%) patients in favorable (with high-risk scores) and unfavorable (with low-risk scores) groups were identified, respectively. As expected, I-131 therapy was associated with poor PFI in patients from the unfavorable group (P = 0.23; Figure 9b) while being associated with improved PFI in patients from the favorable group (P = 0.057; Figure 9c) although the associations did not reach statistical significance. We also used PFS and OS as secondary endpoints to explore the effects of the risk groups on I-131 therapy benefits. Although improved PFS was observed after I-131 therapy in whole 390 patients, the PFS difference was not significant (P = 0.34; Figure 9d). Similarly, a trend of an association between I-131 therapy and poor PFS was found in the unfavorable group (P = 0.15; Figure 9e) and I-131 therapy was significantly associated with improved PFS in the favorable group (P = 0.02; Figure 9f). As for OS (Figure 9g–i), I-131 therapy exerted no effects on OS in patients from the unfavorable group (P = 0.88; Figure 9h). In the favorable group, no death occurred in patients with I-131 therapy (P = 0.012; Figure 9i).

Comparisons of PFI, PFS, and OS between PTC patients with and without postoperative I-131 therapy in whole cohort or subgroups stratified by the risk scores. (a–c) Effects of I-131 therapy on PFI in the whole cohort (a), unfavorable subgroup (b), and favorable subgroup (c). (d–f) Effects of I-131 therapy on PFS in the whole cohort (d), unfavorable subgroup (e), and favorable subgroup (f). (g–i) Effects of I-131 therapy on OS in the whole cohort (g), unfavorable subgroup (h), and favorable subgroup (i).
3.6 GSEA
GSEA was conducted to identify the differentially enriched hallmark gene sets between the high-risk (upper tertile) and low-risk (lower tertile) groups. The gene expression profiles of the high-risk and low-risk groups were compared and subjected to GSEA against hallmark gene sets. The results revealed that 21 gene sets were enriched in the high-risk group while none were enriched in the low-risk group based on the cut criteria. The top ten enriched gene sets in the high-risk group were allograft rejection, interferon-gamma response, inflammatory response, interferon-alpha response, epithelial–mesenchymal transition, coagulation, IL6 JAK STAT3 signaling, Kras signaling up, complement, and IL2 STAT5 signaling (Figure 10).

Top enriched hallmark gene sets between high and low-risk groups determined by GSEA: (a) allograft rejection, (b) interferon-gamma response, (c) inflammatory response, (d) interferon-alpha response, (e) epithelial–mesenchymal transition, (f) coagulation, (g) IL6 JAK STAT3 signaling, (h) Kras signaling up, (i) complement, and (j) IL2 STAT5 signaling.
3.7 Exploration of the lncRNAs in PTC at a single-cell level
scRNA-seq data of 22 samples were extracted from the GEO database including six primary PTC tumors, six paired adjacent normal tissues, five initially treated involved LNs, three recurrent LNs, and two subcutaneous metastases. After quality control, a total of 156,295 cells remained for further analyses. Six main cell populations including B cells, endothelial cells, fibroblasts, myeloid cells, T/natural killer cells, and thyroid cells were identified according to corresponding markers (Figure 11a). The six lncRNAs in our signature were mainly expressed in thyroid cells (Figure 11b), then only thyroid cells were selected for subsequent analyses. The proportion of CTA-398F10.2, RP4-794H19.1, RP11-677M14.3 positive cells in tumor and LN samples was lower than that in adjacent normal samples while the proportion of RP11-60L3.1, RP11-20J15.3, and AE000661.50 positive cells was higher (Figure 11c), similar with the results from TCGA bulk RNA sequencing (Figure S1). The thyroid cells could be further clustered into nine subgroups, which included three developmental hierarchies (State 1–3) based on the cell markers derived from trajectory analysis in the previous report [27]. State 1 indicated the normal thyroid cells, state 2 indicated the premalignant cells, and state 3 indicated the malignant cells. Thyroid cells in adjacent normal samples were all with states 1 and 2 whereas cells with state 3 were enriched in the tumor, LN, and distance metastasis samples (Figure 11d). CTA-398F10.2, RP4-794H19.1, and RP11-677M14.3 were mainly expressed in states 1 and 2 cells while RP11-60L3.1, RP11-20J15.3, and AE000661.50 were mainly expressed in state 3 cells (Figure 11e). Furthermore, we performed hallmark pathway enrichment analyses between the thyroid cells with positive or negative LncRNA expression (Figure 12). A series of hallmark pathways were negatively associated with CTA-398F10.2, RP4-794H19.1, and RP11-677M14.3 expression, including angiogenesis, apoptosis, cholesterol homeostasis, coagulation, complement, epithelial–mesenchymal transition, IL2 STAT5 signaling, inflammatory response, interferon-alpha response, interferon-gamma response, Kras signaling up, P53 pathway, and TNFα signaling via NFκB. Most of those pathways were positively associated with RP11-60L3.1 expression. And only several pathways were significantly associated with RP11-20J15.3 and AE000661.50 expression.

Exploration of the lncRNAs in papillary thyroid carcinoma at a single cell level. Single-cell RNA sequencing data of 22 samples from PTC patients were obtained from the GSE184362 dataset. (a) Cells were clustered into six main types and visualized by UMAP plot. (b) Proportions of the cells with different lncRNAs expression in different cell clusters. (c) Proportions of the thyroid cells with different lncRNAs expression in different sample types. P, paired adjacent normal tissues; T, primary tumors; LN, initially treated involved lymph nodes; rLN, recurrent LN; rSC, recurrent subcutaneous metastases. (d) Proportions of the thyroid cells with different state statuses in different sample types. (e) Proportions of the thyroid cells with different lncRNAs expression in different state cells.

Hallmark pathways enrichment analysis between the thyroid cells with or without the corresponding LncRNA expression based on the single-cell RNA sequencing dataset GSE184362. NES, normalized enrichment score.
4 Discussion
In the present study, we identified 199 autophagy-related lncRNAs in PTC and constructed a novel six-lncRNAs risk signature to predict patients’ PFI based on these lncRNAs. LncRNAs usually function by epigenetically regulated gene expression at different levels, including chromatin, gene splicing, transcription, and post-transcription. Although the function and clinical significance of the lncRNAs in thyroid cancer are not well understood, some of them have been identified to be involved in the autophagy process and thus affect the development and progression of thyroid cancer. Wang et al. have found lncRNA BANCR expression is upregulated in PTC and increases cell proliferation and activates autophagy [29]. Yang et al. have found that lncRNA TNRC6C-AS1 can downregulate STK4 methylation through the Hippo signaling pathway and then inhibit cell proliferation while promoting apoptosis and autophagy in thyroid cancer cells [22]. Zhao et al. have found that silencing lncRNA RP11-476D10.1 can inhibit cell proliferation while increasing apoptosis and autophagy of PTC cells through microRNA-138-5p-dependent inhibition of LRRK2 [30]. Gou et al. have found that lncRNA MALAT1 knockdown inhibits cell proliferation, migration, and invasion while increasing cell apoptosis and autophagy in thyroid cancer cells partly via the ceRNA network of MALAT1/miR-200a-3p/FOXA1 [23]. Gugnoni et al. have found that lncRNA LINC00941 can modulate cytoskeleton architecture and autophagy via regulating CDH6 in thyroid cancer cells [31]. Qin et al. have found that lncRNA GAS8-AS1, induced by ATF2, can promote autophagy by targeting miR-187-3p/ATG5 and miR-1343-3p/ATG7 axes in thyroid cancer cells [32]. Wen et al. have found that lncRNA SNHG9 inhibits cell autophagy whereas promotes cell apoptosis by YBOX3/P21 pathway in normal thyroid epithelial cells [33]. Peng et al. have found that lncRNA SLC26A4-AS1 overexpression can recruit ETS1 to promote ITPR1 expression and thereby promote autophagy and alleviate PTC progression [34]. In our study, we have identified 262 lncRNAs that were differently expressed in PTC compared to adjacent normal controls, and among them, 199 lncRNAs were negatively or positively correlated with ARGs (R 2 > 0.25). Then we utilized a series of methods, including univariate, LASSO, and stepwise multivariate COX regression analyses to establish a prognostic model based on the autophagy-related lncRNAs to predict PFI of PTC patients. The prognostic model consisted of six lncRNAs including CTA-398F10.2, RP4-794H19.1, RP11-677M14.3, RP11-60L3.1, RP11-20J15.3, and AE000661.50. The model was superior to TNM stages, ATA risk stratification, MACIS scores, and the previous model constructed with the key differentially expressed mRNAs regulated by differentially expressed circular RNAs [35]. In addition, we found that postoperative I-131 therapy was associated with favorable PFI, PFS, and OS in patients with high lncRNAs signature risk scores but not in those with low-risk scores, suggesting that the risk scores might be used to identify the patients who benefited from I-131 therapy and reduce unnecessary I-131 administration. Currently, the functions of our included lncRNAs in cancer were not clear. Gong et al. have found that CTA-398F10.2 can be increased by radiation in glioma cells but not in normal astrocytes [36]. Li et al. have found that the proto-oncogene JUN is correlated with RP4-794H19.1 and contributes to TNF signaling pathway in nasopharyngeal cancer [37]. James et al. have found that RP11-677M14.3 is associated with the different molecular subtypes of B cell acute lymphoblastic leukemia and co-occurrent with TGFB2 expression [38]. Liu et al. have mined data from 239 bladder cancer patients from TCGA database and constructed a multidimensional transcriptome signature including RP11-60L3.1 to predict the patient’s prognosis [39]. The molecular mechanisms of these lncRNAs in thyroid cancer need further investigation. By analyzing the single-cell RNA sequencing data, we found that the six lncRNAs were mainly expressed in thyroid cells but not stromal cells. Specifically, CTA-398F10.2, RP4-794H19.1, and RP11-677M14.3 were mainly expressed in normal and premalignant thyroid cells while RP11-60L3.1, RP11-20J15.3, and AE000661.50 were mainly expressed in malignant thyroid cells.
This is the first study to construct an autophagy-related lncRNAs signature, which shows a favorable prognostic performance. Nonetheless, there are still several limitations in the present study. First, the prognostic model was constructed based only on the data from TCGA database, and external validation with independent cohorts is needed. Second, further in vitro and in vivo research should be performed to investigate the molecular mechanisms and interrelation of these six lncRNAs in thyroid cancer.
5 Conclusion
In the present study, we identified 199 autophagy-related lncRNAs in PTC. Based on these lncRNAs, we constructed a novel six lncRNAs risk signature to predict the PFI of PTC patients, which exerts a good predictive performance in the training cohort as well as the validation cohort and is superior to TNM stages, ATA risk stratification, and MACIS scores.
-
Funding information: This study was supported by the hospital-level project of Tianjin People’s Hospital (2021YJ004), Tianjin Medical Key Discipline (Specialty) Construction Project (TJYXZDXK-058B), and Tianjin Health Research Project.
-
Conflict of interest: The authors declare no conflict of interest.
-
Data availability statement: The datasets used or analyzed during this study are available from the TCGA and GEO databases.
References
[1] Siegel RL, Miller KD, Fuchs HE, Jemal A. Cancer statistics, 2021. CA Cancer J Clin. 2021;71(1):7–33.10.3322/caac.21654Suche in Google Scholar PubMed
[2] Deng Y, Li H, Wang M, Li N, Tian T, Wu Y, et al. Global burden of thyroid cancer from 1990 to 2017. JAMA Netw Open. 2020;3(6):e208759.10.1001/jamanetworkopen.2020.8759Suche in Google Scholar PubMed PubMed Central
[3] Udelsman R, Zhang Y. The epidemic of thyroid cancer in the United States: the role of endocrinologists and ultrasounds. Thyroid. 2014;24(3):472–9.10.1089/thy.2013.0257Suche in Google Scholar PubMed PubMed Central
[4] Brito JP, Morris JC, Montori VM. Thyroid cancer: zealous imaging has increased detection and treatment of low risk tumours. BMJ. 2013;347:f4706.10.1136/bmj.f4706Suche in Google Scholar PubMed
[5] Xing M, Haugen BR, Schlumberger M. Progress in molecular-based management of differentiated thyroid cancer. Lancet. 2013;381(9871):1058–69.10.1016/S0140-6736(13)60109-9Suche in Google Scholar PubMed PubMed Central
[6] Perri F, Giordano A, Pisconti S, Ionna F, Chiofalo MG, Longo F, et al. Thyroid cancer management: from a suspicious nodule to targeted therapy. Anticancer Drugs. 2018;29(6):483–90.10.1097/CAD.0000000000000617Suche in Google Scholar PubMed
[7] Grani G, Lamartina L, Durante C, Filetti S, Cooper DS. Follicular thyroid cancer and Hürthle cell carcinoma: challenges in diagnosis, treatment, and clinical management. Lancet Diabetes Endocrinol. 2018;6(6):500–14.10.1016/S2213-8587(17)30325-XSuche in Google Scholar PubMed
[8] Durante C, Montesano T, Torlontano M, Attard M, Monzani F, Tumino S, et al. Papillary thyroid cancer: time course of recurrences during postsurgery surveillance. J Clin Endocrinol Metab. 2013;98(2):636–42.10.1210/jc.2012-3401Suche in Google Scholar PubMed
[9] Mizushima N, Komatsu M. Autophagy: renovation of cells and tissues. Cell. 2011;147(4):728–41.10.1016/j.cell.2011.10.026Suche in Google Scholar PubMed
[10] Russo M, Russo GL. Autophagy inducers in cancer. Biochem Pharmacol. 2018;153:51–61.10.1016/j.bcp.2018.02.007Suche in Google Scholar PubMed
[11] Levine B, Kroemer G. Autophagy in the pathogenesis of disease. Cell. 2008;132(1):27–42.10.1016/j.cell.2007.12.018Suche in Google Scholar PubMed PubMed Central
[12] Smith AG, Macleod KF. Autophagy, cancer stem cells and drug resistance. J Pathol. 2019;247(5):708–18.10.1002/path.5222Suche in Google Scholar PubMed PubMed Central
[13] Kim HM, Kim ES, Koo JS. Expression of autophagy-related proteins in different types of thyroid cancer. Int J Mol Sci. 2017;18(3):540.10.3390/ijms18030540Suche in Google Scholar PubMed PubMed Central
[14] Plantinga TS, Tesselaar MH, Morreau H, Corssmit EPM, Willemsen BK, Kusters B, et al. Autophagy activity is associated with membranous sodium iodide symporter expression and clinical response to radioiodine therapy in non-medullary thyroid cancer. Autophagy. 2016;12(7):1195–205.10.1080/15548627.2016.1174802Suche in Google Scholar PubMed PubMed Central
[15] Wang W, Kang H, Zhao Y, Min I, Wyrwas B, Moore M, et al. Targeting autophagy sensitizes BRAF-mutant thyroid cancer to vemurafenib. J Clin Endocrinol Metab. 2017;102(2):634–43.10.1210/jc.2016-1999Suche in Google Scholar PubMed PubMed Central
[16] Tesselaar MH, Crezee T, Swarts HG, Gerrits D, Boerman OC, Koenderink JB, et al. Digitalis-like compounds facilitate non-medullary thyroid cancer redifferentiation through intracellular Ca2+, FOS, and autophagy-dependent pathways. Mol Cancer Ther. 2017;16(1):169–81.10.1158/1535-7163.MCT-16-0460Suche in Google Scholar PubMed
[17] de Oliveira JC, Oliveira LC, Mathias C, Pedroso GA, Lemos DS, Salviano-Silva A, et al. Long non-coding RNAs in cancer: another layer of complexity. J Gene Med. 2019;21(1):e3065.10.1002/jgm.3065Suche in Google Scholar PubMed
[18] Cao J, Zhang M, Zhang L, Lou J, Zhou F, Fang M. Non-coding RNA in thyroid cancer – functions and mechanisms. Cancer Lett. 2021;496:117–26.10.1016/j.canlet.2020.08.021Suche in Google Scholar PubMed
[19] Zhang X, Li D, Jia C, Cai H, Lv Z, Wu B. METTL14 promotes tumorigenesis by regulating lncRNA OIP5-AS1/miR-98/ADAMTS8 signaling in papillary thyroid cancer. Cell Death Dis. 2021;12(6):617.10.1038/s41419-021-03891-6Suche in Google Scholar PubMed PubMed Central
[20] Wu L, Ding Y, Tong H, Zhuang X, Cai J, Si Y, et al. Long noncoding RNA FER1L4 promotes the malignant processes of papillary thyroid cancer by targeting the miR-612/Cadherin 4 axis. Cancer Cell Int. 2021;21(1):392.10.1186/s12935-021-02097-2Suche in Google Scholar PubMed PubMed Central
[21] Guo K, Qian K, Shi Y, Sun T, Wang Z. LncRNA-MIAT promotes thyroid cancer progression and function as ceRNA to target EZH2 by sponging miR-150-5p. Cell Death Dis. 2021;12(12):1097.10.1038/s41419-021-04386-0Suche in Google Scholar PubMed PubMed Central
[22] Yang LX, Wu J, Guo ML, Zhang Y, Ma SG. Suppression of long non-coding RNA TNRC6C-AS1 protects against thyroid carcinoma through DNA demethylation of STK4 via the Hippo signalling pathway. Cell Prolif. 2019;52(3):e12564.10.1111/cpr.12564Suche in Google Scholar PubMed PubMed Central
[23] Gou L, Zou H, Li B. Long noncoding RNA MALAT1 knockdown inhibits progression of anaplastic thyroid carcinoma by regulating miR-200a-3p/FOXA1. Cancer Biol Ther. 2019;20(11):1355–65.10.1080/15384047.2019.1617567Suche in Google Scholar PubMed PubMed Central
[24] Cancer Genome Atlas Research N. Integrated genomic characterization of papillary thyroid carcinoma. Cell. 2014;159(3):676–90.10.1016/j.cell.2014.09.050Suche in Google Scholar PubMed PubMed Central
[25] Lin MT, Chang CH, Sun LC, Liu HM, Chang HW, Chen CA, et al. Risk factors and derived formosa score for intravenous immunoglobulin unresponsiveness in Taiwanese children with Kawasaki disease. J Formos Med Assoc. 2016;115(5):350–5.10.1016/j.jfma.2015.03.012Suche in Google Scholar PubMed
[26] Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43(7):e47.10.1093/nar/gkv007Suche in Google Scholar PubMed PubMed Central
[27] Pu W, Shi X, Yu P, Zhang M, Liu Z, Tan L, et al. Single-cell transcriptomic analysis of the tumor ecosystems underlying initiation and progression of papillary thyroid carcinoma. Nat Commun. 2021;12(1):6058.10.1038/s41467-021-26343-3Suche in Google Scholar PubMed PubMed Central
[28] Hao Y, Hao S, Andersen-Nissen E, Mauck WM, III, Zheng S, Butler A, et al. Integrated analysis of multimodal single-cell data. Cell. 2021;184(13):3573–87.e29.10.1016/j.cell.2021.04.048Suche in Google Scholar PubMed PubMed Central
[29] Wang Y, Guo Q, Zhao Y, Chen J, Wang S, Hu J, et al. BRAF-activated long non-coding RNA contributes to cell proliferation and activates autophagy in papillary thyroid carcinoma. Oncol Lett. 2014;8(5):1947–52.10.3892/ol.2014.2487Suche in Google Scholar PubMed PubMed Central
[30] Zhao Y, Zhao L, Li J, Zhong L. Silencing of long noncoding RNA RP11-476D10.1 enhances apoptosis and autophagy while inhibiting proliferation of papillary thyroid carcinoma cells via microRNA-138-5p-dependent inhibition of LRRK2. J Cell Physiol. 2019;234(11):20980–91.10.1002/jcp.28702Suche in Google Scholar PubMed
[31] Gugnoni M, Manicardi V, Torricelli F, Sauta E, Bellazzi R, Manzotti G, et al. Linc00941 is a novel transforming growth factor β target that primes papillary thyroid cancer metastatic behavior by regulating the expression of cadherin 6. Thyroid. 2021;31(2):247–63.10.1089/thy.2020.0001Suche in Google Scholar PubMed
[32] Qin Y, Sun W, Wang Z, Dong W, He L, Zhang T, et al. ATF2-induced lncRNA GAS8-AS1 promotes autophagy of thyroid cancer cells by targeting the miR-187-3p/ATG5 and miR-1343-3p/ATG7 axes. Mol Ther Nucleic Acids. 2020;22:584–600.10.1016/j.omtn.2020.09.022Suche in Google Scholar PubMed PubMed Central
[33] Wen D, Liu WL, Lu ZW, Cao YM, Ji QH, Wei WJ. SNHG9, a papillary thyroid cancer cell exosome-enriched lncRNA, inhibits cell autophagy and promotes cell apoptosis of normal thyroid epithelial cell Nthy-ori-3 through YBOX3/P21 pathway. Front Oncol. 2021;11:647034.10.3389/fonc.2021.647034Suche in Google Scholar PubMed PubMed Central
[34] Peng D, Li W, Zhang B, Liu X. Overexpression of lncRNA SLC26A4-AS1 inhibits papillary thyroid carcinoma progression through recruiting ETS1 to promote ITPR1-mediated autophagy. J Cell Mol Med. 2021;25(17):8148–58.10.1111/jcmm.16545Suche in Google Scholar PubMed PubMed Central
[35] Wu M, Li S, Han J, Liu R, Yuan H, Xu X, et al. Progression risk assessment of post-surgical papillary thyroid carcinoma based on circular RNA-associated competing endogenous RNA mechanisms. Front Cell Dev Biol. 2020;8:606327.10.3389/fcell.2020.606327Suche in Google Scholar PubMed PubMed Central
[36] Gong L, Gu J, Ge J, Wu X, Zhang C, Yang C, et al. Differential radiation response between normal astrocytes and glioma cells revealed by comparative transcriptome analysis. Onco Targets Ther. 2017;10:5755–64.10.2147/OTT.S144002Suche in Google Scholar PubMed PubMed Central
[37] Li X-X, Liang X-J, Zhou L-Y, Liu R-J, Bi W, Zhang S, et al. Analysis of differential expressions of long non-coding RNAs in nasopharyngeal carcinoma using next-generation deep sequencing. J Cancer. 2018;9(11):1943–50.10.7150/jca.23481Suche in Google Scholar PubMed PubMed Central
[38] James AR, Schroeder MP, Neumann M, Bastian L, Eckert C, Gökbuget N, et al. Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia. J Hematol Oncol. 2019;12(1):8.10.1186/s13045-018-0692-3Suche in Google Scholar PubMed PubMed Central
[39] Liu CP, Zhang JH, Zheng SC, Liu J, Guo JC. A novel clinical multidimensional transcriptome signature predicts prognosis in bladder cancer. Oncol Rep. 2018;40(5):2826–35.10.3892/or.2018.6677Suche in Google Scholar PubMed
© 2023 the author(s), published by De Gruyter
This work is licensed under the Creative Commons Attribution 4.0 International License.
Artikel in diesem Heft
- Research Articles
- Exosomes derived from mesenchymal stem cells overexpressing miR-210 inhibits neuronal inflammation and contribute to neurite outgrowth through modulating microglia polarization
- Current situation of acute ST-segment elevation myocardial infarction in a county hospital chest pain center during an epidemic of novel coronavirus pneumonia
- circ-IARS depletion inhibits the progression of non-small-cell lung cancer by circ-IARS/miR-1252-5p/HDGF ceRNA pathway
- circRNA ITGA7 restrains growth and enhances radiosensitivity by up-regulating SMAD4 in colorectal carcinoma
- WDR79 promotes aerobic glycolysis of pancreatic ductal adenocarcinoma (PDAC) by the suppression of SIRT4
- Up-regulation of collagen type V alpha 2 (COL5A2) promotes malignant phenotypes in gastric cancer cell via inducing epithelial–mesenchymal transition (EMT)
- Inhibition of TERC inhibits neural apoptosis and inflammation in spinal cord injury through Akt activation and p-38 inhibition via the miR-34a-5p/XBP-1 axis
- 3D-printed polyether-ether-ketone/n-TiO2 composite enhances the cytocompatibility and osteogenic differentiation of MC3T3-E1 cells by downregulating miR-154-5p
- Propofol-mediated circ_0000735 downregulation restrains tumor growth by decreasing integrin-β1 expression in non-small cell lung cancer
- PVT1/miR-16/CCND1 axis regulates gastric cancer progression
- Silencing of circ_002136 sensitizes gastric cancer to paclitaxel by targeting the miR-16-5p/HMGA1 axis
- Short-term outcomes after simultaneous gastrectomy plus cholecystectomy in gastric cancer: A pooling up analysis
- SCARA5 inhibits oral squamous cell carcinoma via inactivating the STAT3 and PI3K/AKT signaling pathways
- Molecular mechanism by which the Notch signaling pathway regulates autophagy in a rat model of pulmonary fibrosis in pigeon breeder’s lung
- lncRNA TPT1-AS1 promotes cell migration and invasion in esophageal squamous-cell carcinomas by regulating the miR-26a/HMGA1 axis
- SIRT1/APE1 promotes the viability of gastric cancer cells by inhibiting p53 to suppress ferroptosis
- Glycoprotein non-metastatic melanoma B interacts with epidermal growth factor receptor to regulate neural stem cell survival and differentiation
- Treatments for brain metastases from EGFR/ALK-negative/unselected NSCLC: A network meta-analysis
- Association of osteoporosis and skeletal muscle loss with serum type I collagen carboxyl-terminal peptide β glypeptide: A cross-sectional study in elder Chinese population
- circ_0000376 knockdown suppresses non-small cell lung cancer cell tumor properties by the miR-545-3p/PDPK1 pathway
- Delivery in a vertical birth chair supported by freedom of movement during labor: A randomized control trial
- UBE2J1 knockdown promotes cell apoptosis in endometrial cancer via regulating PI3K/AKT and MDM2/p53 signaling
- Metabolic resuscitation therapy in critically ill patients with sepsis and septic shock: A pilot prospective randomized controlled trial
- Lycopene ameliorates locomotor activity and urinary frequency induced by pelvic venous congestion in rats
- UHRF1-induced connexin26 methylation is involved in hearing damage triggered by intermittent hypoxia in neonatal rats
- LINC00511 promotes melanoma progression by targeting miR-610/NUCB2
- Ultra-high-performance liquid chromatography-tandem mass spectrometry analysis of serum metabolomic characteristics in people with different vitamin D levels
- Role of Jumonji domain-containing protein D3 and its inhibitor GSK-J4 in Hashimoto’s thyroiditis
- circ_0014736 induces GPR4 to regulate the biological behaviors of human placental trophoblast cells through miR-942-5p in preeclampsia
- Monitoring of sirolimus in the whole blood samples from pediatric patients with lymphatic anomalies
- Effects of osteogenic growth peptide C-terminal pentapeptide and its analogue on bone remodeling in an osteoporosis rat model
- A novel autophagy-related long non-coding RNAs signature predicting progression-free interval and I-131 therapy benefits in papillary thyroid carcinoma
- WGCNA-based identification of potential targets and pathways in response to treatment in locally advanced breast cancer patients
- Radiomics model using preoperative computed tomography angiography images to differentiate new from old emboli of acute lower limb arterial embolism
- Dysregulated lncRNAs are involved in the progress of myocardial infarction by constructing regulatory networks
- Single-arm trial to evaluate the efficacy and safety of baclofen in treatment of intractable hiccup caused by malignant tumor chemotherapy
- Genetic polymorphisms of MRPS30-DT and NINJ2 may influence lung cancer risk
- Efficacy of immune checkpoint inhibitors in patients with KRAS-mutant advanced non-small cell lung cancer: A retrospective analysis
- Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma
- Upregulation of lncRNA LANCL1-AS1 inhibits the progression of non-small-cell lung cancer via the miR-3680-3p/GMFG axis
- CircRANBP17 modulated KDM1A to regulate neuroblastoma progression by sponging miR-27b-3p
- Exosomal miR-93-5p regulated the progression of osteoarthritis by targeting ADAMTS9
- Downregulation of RBM17 enhances cisplatin sensitivity and inhibits cell invasion in human hypopharyngeal cancer cells
- HDAC5-mediated PRAME regulates the proliferation, migration, invasion, and EMT of laryngeal squamous cell carcinoma via the PI3K/AKT/mTOR signaling pathway
- The association between sleep duration, quality, and nonalcoholic fatty liver disease: A cross-sectional study
- Myostatin silencing inhibits podocyte apoptosis in membranous nephropathy through Smad3/PKA/NOX4 signaling pathway
- A novel long noncoding RNA AC125257.1 facilitates colorectal cancer progression by targeting miR-133a-3p/CASC5 axis
- Impact of omicron wave and associated control measures in Shanghai on health management and psychosocial well-being of patients with chronic conditions
- Clinicopathological characteristics and prognosis of young patients aged ≤45 years old with non-small cell lung cancer
- TMT-based comprehensive proteomic profiling identifies serum prognostic signatures of acute myeloid leukemia
- The dose limits of teeth protection for patients with nasopharyngeal carcinoma undergoing radiotherapy based on the early oral health-related quality of life
- miR-30b-5p targeting GRIN2A inhibits hippocampal damage in epilepsy
- Long non-coding RNA AL137789.1 promoted malignant biological behaviors and immune escape of pancreatic carcinoma cells
- IRF6 and FGF1 polymorphisms in non-syndromic cleft lip with or without cleft palate in the Polish population
- Comprehensive analysis of the role of SFXN family in breast cancer
- Efficacy of bronchoscopic intratumoral injection of endostar and cisplatin in lung squamous cell carcinoma patients underwent conventional chemoradiotherapy
- Silencing of long noncoding RNA MIAT inhibits the viability and proliferation of breast cancer cells by promoting miR-378a-5p expression
- AG1024, an IGF-1 receptor inhibitor, ameliorates renal injury in rats with diabetic nephropathy via the SOCS/JAK2/STAT pathway
- Downregulation of KIAA1199 alleviated the activation, proliferation, and migration of hepatic stellate cells by the inhibition of epithelial–mesenchymal transition
- Exendin-4 regulates the MAPK and WNT signaling pathways to alleviate the osteogenic inhibition of periodontal ligament stem cells in a high glucose environment
- Inhibition of glycolysis represses the growth and alleviates the endoplasmic reticulum stress of breast cancer cells by regulating TMTC3
- The function of lncRNA EMX2OS/miR-653-5p and its regulatory mechanism in lung adenocarcinoma
- Tectorigenin alleviates the apoptosis and inflammation in spinal cord injury cell model through inhibiting insulin-like growth factor-binding protein 6
- Ultrasound examination supporting CT or MRI in the evaluation of cervical lymphadenopathy in patients with irradiation-treated head and neck cancer
- F-box and WD repeat domain containing 7 inhibits the activation of hepatic stellate cells by degrading delta-like ligand 1 to block Notch signaling pathway
- Knockdown of circ_0005615 enhances the radiosensitivity of colorectal cancer by regulating the miR-665/NOTCH1 axis
- Long noncoding RNA Mhrt alleviates angiotensin II-induced cardiac hypertrophy phenotypes by mediating the miR-765/Wnt family member 7B pathway
- Effect of miR-499-5p/SOX6 axis on atrial fibrosis in rats with atrial fibrillation
- Cholesterol induces inflammation and reduces glucose utilization
- circ_0004904 regulates the trophoblast cell in preeclampsia via miR-19b-3p/ARRDC3 axis
- NECAB3 promotes the migration and invasion of liver cancer cells through HIF-1α/RIT1 signaling pathway
- The poor performance of cardiovascular risk scores in identifying patients with idiopathic inflammatory myopathies at high cardiovascular risk
- miR-2053 inhibits the growth of ovarian cancer cells by downregulating SOX4
- Nucleophosmin 1 associating with engulfment and cell motility protein 1 regulates hepatocellular carcinoma cell chemotaxis and metastasis
- α-Hederin regulates macrophage polarization to relieve sepsis-induced lung and liver injuries in mice
- Changes of microbiota level in urinary tract infections: A meta-analysis
- Identification of key enzalutamide-resistance-related genes in castration-resistant prostate cancer and verification of RAD51 functions
- Falls during oxaliplatin-based chemotherapy for gastrointestinal malignancies – (lessons learned from) a prospective study
- Outcomes of low-risk birth care during the Covid-19 pandemic: A cohort study from a tertiary care center in Lithuania
- Vitamin D protects intestines from liver cirrhosis-induced inflammation and oxidative stress by inhibiting the TLR4/MyD88/NF-κB signaling pathway
- Integrated transcriptome analysis identifies APPL1/RPS6KB2/GALK1 as immune-related metastasis factors in breast cancer
- Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme
- Circular RNA Circ_0038467 promotes the maturation of miRNA-203 to increase lipopolysaccharide-induced apoptosis of chondrocytes
- An economic evaluation of fine-needle cytology as the primary diagnostic tool in the diagnosis of lymphadenopathy
- Midazolam impedes lung carcinoma cell proliferation and migration via EGFR/MEK/ERK signaling pathway
- Network pharmacology combined with molecular docking and experimental validation to reveal the pharmacological mechanism of naringin against renal fibrosis
- PTPN12 down-regulated by miR-146b-3p gene affects the malignant progression of laryngeal squamous cell carcinoma
- miR-141-3p accelerates ovarian cancer progression and promotes M2-like macrophage polarization by targeting the Keap1-Nrf2 pathway
- lncRNA OIP5-AS1 attenuates the osteoarthritis progression in IL-1β-stimulated chondrocytes
- Overexpression of LINC00607 inhibits cell growth and aggressiveness by regulating the miR-1289/EFNA5 axis in non-small-cell lung cancer
- Subjective well-being in informal caregivers during the COVID-19 pandemic
- Nrf2 protects against myocardial ischemia-reperfusion injury in diabetic rats by inhibiting Drp1-mediated mitochondrial fission
- Unfolded protein response inhibits KAT2B/MLKL-mediated necroptosis of hepatocytes by promoting BMI1 level to ubiquitinate KAT2B
- Bladder cancer screening: The new selection and prediction model
- circNFATC3 facilitated the progression of oral squamous cell carcinoma via the miR-520h/LDHA axis
- Prone position effect in intensive care patients with SARS-COV-2 pneumonia
- Clinical observation on the efficacy of Tongdu Tuina manipulation in the treatment of primary enuresis in children
- Dihydroartemisinin ameliorates cerebral I/R injury in rats via regulating VWF and autophagy-mediated SIRT1/FOXO1 pathway
- Knockdown of circ_0113656 assuages oxidized low-density lipoprotein-induced vascular smooth muscle cell injury through the miR-188-3p/IGF2 pathway
- Low Ang-(1–7) and high des-Arg9 bradykinin serum levels are correlated with cardiovascular risk factors in patients with COVID-19
- Effect of maternal age and body mass index on induction of labor with oral misoprostol for premature rupture of membrane at term: A retrospective cross-sectional study
- Potential protective effects of Huanglian Jiedu Decoction against COVID-19-associated acute kidney injury: A network-based pharmacological and molecular docking study
- Clinical significance of serum MBD3 detection in girls with central precocious puberty
- Clinical features of varicella-zoster virus caused neurological diseases detected by metagenomic next-generation sequencing
- Collagen treatment of complex anorectal fistula: 3 years follow-up
- LncRNA CASC15 inhibition relieves renal fibrosis in diabetic nephropathy through down-regulating SP-A by sponging to miR-424
- Efficacy analysis of empirical bismuth quadruple therapy, high-dose dual therapy, and resistance gene-based triple therapy as a first-line Helicobacter pylori eradication regimen – An open-label, randomized trial
- SMOC2 plays a role in heart failure via regulating TGF-β1/Smad3 pathway-mediated autophagy
- A prospective cohort study of the impact of chronic disease on fall injuries in middle-aged and older adults
- circRNA THBS1 silencing inhibits the malignant biological behavior of cervical cancer cells via the regulation of miR-543/HMGB2 axis
- hsa_circ_0000285 sponging miR-582-3p promotes neuroblastoma progression by regulating the Wnt/β-catenin signaling pathway
- Long non-coding RNA GNAS-AS1 knockdown inhibits proliferation and epithelial–mesenchymal transition of lung adenocarcinoma cells via the microRNA-433-3p/Rab3A axis
- lncRNA UCA1 regulates miR-132/Lrrfip1 axis to promote vascular smooth muscle cell proliferation
- Twenty-four-color full spectrum flow cytometry panel for minimal residual disease detection in acute myeloid leukemia
- Hsa-miR-223-3p participates in the process of anthracycline-induced cardiomyocyte damage by regulating NFIA gene
- Anti-inflammatory effect of ApoE23 on Salmonella typhimurium-induced sepsis in mice
- Analysis of somatic mutations and key driving factors of cervical cancer progression
- Hsa_circ_0028007 regulates the progression of nasopharyngeal carcinoma through the miR-1179/SQLE axis
- Variations in sexual function after laparoendoscopic single-site hysterectomy in women with benign gynecologic diseases
- Effects of pharmacological delay with roxadustat on multi-territory perforator flap survival in rats
- Analysis of heroin effects on calcium channels in rat cardiomyocytes based on transcriptomics and metabolomics
- Risk factors of recurrent bacterial vaginosis among women of reproductive age: A cross-sectional study
- Alkbh5 plays indispensable roles in maintaining self-renewal of hematopoietic stem cells
- Study to compare the effect of casirivimab and imdevimab, remdesivir, and favipiravir on progression and multi-organ function of hospitalized COVID-19 patients
- Correlation between microvessel maturity and ISUP grades assessed using contrast-enhanced transrectal ultrasonography in prostate cancer
- The protective effect of caffeic acid phenethyl ester in the nephrotoxicity induced by α-cypermethrin
- Norepinephrine alleviates cyclosporin A-induced nephrotoxicity by enhancing the expression of SFRP1
- Effect of RUNX1/FOXP3 axis on apoptosis of T and B lymphocytes and immunosuppression in sepsis
- The function of Foxp1 represses β-adrenergic receptor transcription in the occurrence and development of bladder cancer through STAT3 activity
- Risk model and validation of carbapenem-resistant Klebsiella pneumoniae infection in patients with cerebrovascular disease in the ICU
- Calycosin protects against chronic prostatitis in rats via inhibition of the p38MAPK/NF-κB pathway
- Pan-cancer analysis of the PDE4DIP gene with potential prognostic and immunotherapeutic values in multiple cancers including acute myeloid leukemia
- The safety and immunogenicity to inactivated COVID-19 vaccine in patients with hyperlipemia
- Circ-UBR4 regulates the proliferation, migration, inflammation, and apoptosis in ox-LDL-induced vascular smooth muscle cells via miR-515-5p/IGF2 axis
- Clinical characteristics of current COVID-19 rehabilitation outpatients in China
- Luteolin alleviates ulcerative colitis in rats via regulating immune response, oxidative stress, and metabolic profiling
- miR-199a-5p inhibits aortic valve calcification by targeting ATF6 and GRP78 in valve interstitial cells
- The application of iliac fascia space block combined with esketamine intravenous general anesthesia in PFNA surgery of the elderly: A prospective, single-center, controlled trial
- Elevated blood acetoacetate levels reduce major adverse cardiac and cerebrovascular events risk in acute myocardial infarction
- The effects of progesterone on the healing of obstetric anal sphincter damage in female rats
- Identification of cuproptosis-related genes for predicting the development of prostate cancer
- Lumican silencing ameliorates β-glycerophosphate-mediated vascular smooth muscle cell calcification by attenuating the inhibition of APOB on KIF2C activity
- Targeting PTBP1 blocks glutamine metabolism to improve the cisplatin sensitivity of hepatocarcinoma cells through modulating the mRNA stability of glutaminase
- A single center prospective study: Influences of different hip flexion angles on the measurement of lumbar spine bone mineral density by dual energy X-ray absorptiometry
- Clinical analysis of AN69ST membrane continuous venous hemofiltration in the treatment of severe sepsis
- Antibiotics therapy combined with probiotics administered intravaginally for the treatment of bacterial vaginosis: A systematic review and meta-analysis
- Construction of a ceRNA network to reveal a vascular invasion associated prognostic model in hepatocellular carcinoma
- A pan-cancer analysis of STAT3 expression and genetic alterations in human tumors
- A prognostic signature based on seven T-cell-related cell clustering genes in bladder urothelial carcinoma
- Pepsin concentration in oral lavage fluid of rabbit reflux model constructed by dilating the lower esophageal sphincter
- The antihypertensive felodipine shows synergistic activity with immune checkpoint blockade and inhibits tumor growth via NFAT1 in LUSC
- Tanshinone IIA attenuates valvular interstitial cells’ calcification induced by oxidized low density lipoprotein via reducing endoplasmic reticulum stress
- AS-IV enhances the antitumor effects of propofol in NSCLC cells by inhibiting autophagy
- Establishment of two oxaliplatin-resistant gallbladder cancer cell lines and comprehensive analysis of dysregulated genes
- Trial protocol: Feasibility of neuromodulation with connectivity-guided intermittent theta-burst stimulation for improving cognition in multiple sclerosis
- LncRNA LINC00592 mediates the promoter methylation of WIF1 to promote the development of bladder cancer
- Factors associated with gastrointestinal dysmotility in critically ill patients
- Mechanisms by which spinal cord stimulation intervenes in atrial fibrillation: The involvement of the endothelin-1 and nerve growth factor/p75NTR pathways
- Analysis of two-gene signatures and related drugs in small-cell lung cancer by bioinformatics
- Silencing USP19 alleviates cigarette smoke extract-induced mitochondrial dysfunction in BEAS-2B cells by targeting FUNDC1
- Menstrual irregularities associated with COVID-19 vaccines among women in Saudi Arabia: A survey during 2022
- Ferroptosis involves in Schwann cell death in diabetic peripheral neuropathy
- The effect of AQP4 on tau protein aggregation in neurodegeneration and persistent neuroinflammation after cerebral microinfarcts
- Activation of UBEC2 by transcription factor MYBL2 affects DNA damage and promotes gastric cancer progression and cisplatin resistance
- Analysis of clinical characteristics in proximal and distal reflux monitoring among patients with gastroesophageal reflux disease
- Exosomal circ-0020887 and circ-0009590 as novel biomarkers for the diagnosis and prediction of short-term adverse cardiovascular outcomes in STEMI patients
- Upregulated microRNA-429 confers endometrial stromal cell dysfunction by targeting HIF1AN and regulating the HIF1A/VEGF pathway
- Bibliometrics and knowledge map analysis of ultrasound-guided regional anesthesia
- Knockdown of NUPR1 inhibits angiogenesis in lung cancer through IRE1/XBP1 and PERK/eIF2α/ATF4 signaling pathways
- D-dimer trends predict COVID-19 patient’s prognosis: A retrospective chart review study
- WTAP affects intracranial aneurysm progression by regulating m6A methylation modification
- Using of endoscopic polypectomy in patients with diagnosed malignant colorectal polyp – The cross-sectional clinical study
- Anti-S100A4 antibody administration alleviates bronchial epithelial–mesenchymal transition in asthmatic mice
- Prognostic evaluation of system immune-inflammatory index and prognostic nutritional index in double expressor diffuse large B-cell lymphoma
- Prevalence and antibiogram of bacteria causing urinary tract infection among patients with chronic kidney disease
- Reactive oxygen species within the vaginal space: An additional promoter of cervical intraepithelial neoplasia and uterine cervical cancer development?
- Identification of disulfidptosis-related genes and immune infiltration in lower-grade glioma
- A new technique for uterine-preserving pelvic organ prolapse surgery: Laparoscopic rectus abdominis hysteropexy for uterine prolapse by comparing with traditional techniques
- Self-isolation of an Italian long-term care facility during COVID-19 pandemic: A comparison study on care-related infectious episodes
- A comparative study on the overlapping effects of clinically applicable therapeutic interventions in patients with central nervous system damage
- Low intensity extracorporeal shockwave therapy for chronic pelvic pain syndrome: Long-term follow-up
- The diagnostic accuracy of touch imprint cytology for sentinel lymph node metastases of breast cancer: An up-to-date meta-analysis of 4,073 patients
- Mortality associated with Sjögren’s syndrome in the United States in the 1999–2020 period: A multiple cause-of-death study
- CircMMP11 as a prognostic biomarker mediates miR-361-3p/HMGB1 axis to accelerate malignant progression of hepatocellular carcinoma
- Analysis of the clinical characteristics and prognosis of adult de novo acute myeloid leukemia (none APL) with PTPN11 mutations
- KMT2A maintains stemness of gastric cancer cells through regulating Wnt/β-catenin signaling-activated transcriptional factor KLF11
- Evaluation of placental oxygenation by near-infrared spectroscopy in relation to ultrasound maturation grade in physiological term pregnancies
- The role of ultrasonographic findings for PIK3CA-mutated, hormone receptor-positive, human epidermal growth factor receptor-2-negative breast cancer
- Construction of immunogenic cell death-related molecular subtypes and prognostic signature in colorectal cancer
- Long-term prognostic value of high-sensitivity cardiac troponin-I in patients with idiopathic dilated cardiomyopathy
- Establishing a novel Fanconi anemia signaling pathway-associated prognostic model and tumor clustering for pediatric acute myeloid leukemia patients
- Integrative bioinformatics analysis reveals STAT2 as a novel biomarker of inflammation-related cardiac dysfunction in atrial fibrillation
- Adipose-derived stem cells repair radiation-induced chronic lung injury via inhibiting TGF-β1/Smad 3 signaling pathway
- Real-world practice of idiopathic pulmonary fibrosis: Results from a 2000–2016 cohort
- lncRNA LENGA sponges miR-378 to promote myocardial fibrosis in atrial fibrillation
- Diagnostic value of urinary Tamm-Horsfall protein and 24 h urine osmolality for recurrent calcium oxalate stones of the upper urinary tract: Cross-sectional study
- The value of color Doppler ultrasonography combined with serum tumor markers in differential diagnosis of gastric stromal tumor and gastric cancer
- The spike protein of SARS-CoV-2 induces inflammation and EMT of lung epithelial cells and fibroblasts through the upregulation of GADD45A
- Mycophenolate mofetil versus cyclophosphamide plus in patients with connective tissue disease-associated interstitial lung disease: Efficacy and safety analysis
- MiR-1278 targets CALD1 and suppresses the progression of gastric cancer via the MAPK pathway
- Metabolomic analysis of serum short-chain fatty acid concentrations in a mouse of MPTP-induced Parkinson’s disease after dietary supplementation with branched-chain amino acids
- Cimifugin inhibits adipogenesis and TNF-α-induced insulin resistance in 3T3-L1 cells
- Predictors of gastrointestinal complaints in patients on metformin therapy
- Prescribing patterns in patients with chronic obstructive pulmonary disease and atrial fibrillation
- A retrospective analysis of the effect of latent tuberculosis infection on clinical pregnancy outcomes of in vitro fertilization–fresh embryo transferred in infertile women
- Appropriateness and clinical outcomes of short sustained low-efficiency dialysis: A national experience
- miR-29 regulates metabolism by inhibiting JNK-1 expression in non-obese patients with type 2 diabetes mellitus and NAFLD
- Clinical features and management of lymphoepithelial cyst
- Serum VEGF, high-sensitivity CRP, and cystatin-C assist in the diagnosis of type 2 diabetic retinopathy complicated with hyperuricemia
- ENPP1 ameliorates vascular calcification via inhibiting the osteogenic transformation of VSMCs and generating PPi
- Significance of monitoring the levels of thyroid hormone antibodies and glucose and lipid metabolism antibodies in patients suffer from type 2 diabetes
- The causal relationship between immune cells and different kidney diseases: A Mendelian randomization study
- Interleukin 33, soluble suppression of tumorigenicity 2, interleukin 27, and galectin 3 as predictors for outcome in patients admitted to intensive care units
- Identification of diagnostic immune-related gene biomarkers for predicting heart failure after acute myocardial infarction
- Long-term administration of probiotics prevents gastrointestinal mucosal barrier dysfunction in septic mice partly by upregulating the 5-HT degradation pathway
- miR-192 inhibits the activation of hepatic stellate cells by targeting Rictor
- Diagnostic and prognostic value of MR-pro ADM, procalcitonin, and copeptin in sepsis
- Review Articles
- Prenatal diagnosis of fetal defects and its implications on the delivery mode
- Electromagnetic fields exposure on fetal and childhood abnormalities: Systematic review and meta-analysis
- Characteristics of antibiotic resistance mechanisms and genes of Klebsiella pneumoniae
- Saddle pulmonary embolism in the setting of COVID-19 infection: A systematic review of case reports and case series
- Vitamin C and epigenetics: A short physiological overview
- Ebselen: A promising therapy protecting cardiomyocytes from excess iron in iron-overloaded thalassemia patients
- Aspirin versus LMWH for VTE prophylaxis after orthopedic surgery
- Mechanism of rhubarb in the treatment of hyperlipidemia: A recent review
- Surgical management and outcomes of traumatic global brachial plexus injury: A concise review and our center approach
- The progress of autoimmune hepatitis research and future challenges
- METTL16 in human diseases: What should we do next?
- New insights into the prevention of ureteral stents encrustation
- VISTA as a prospective immune checkpoint in gynecological malignant tumors: A review of the literature
- Case Reports
- Mycobacterium xenopi infection of the kidney and lymph nodes: A case report
- Genetic mutation of SLC6A20 (c.1072T > C) in a family with nephrolithiasis: A case report
- Chronic hepatitis B complicated with secondary hemochromatosis was cured clinically: A case report
- Liver abscess complicated with multiple organ invasive infection caused by hematogenous disseminated hypervirulent Klebsiella pneumoniae: A case report
- Urokinase-based lock solutions for catheter salvage: A case of an upcoming kidney transplant recipient
- Two case reports of maturity-onset diabetes of the young type 3 caused by the hepatocyte nuclear factor 1α gene mutation
- Immune checkpoint inhibitor-related pancreatitis: What is known and what is not
- Does total hip arthroplasty result in intercostal nerve injury? A case report and literature review
- Clinicopathological characteristics and diagnosis of hepatic sinusoidal obstruction syndrome caused by Tusanqi – Case report and literature review
- Synchronous triple primary gastrointestinal malignant tumors treated with laparoscopic surgery: A case report
- CT-guided percutaneous microwave ablation combined with bone cement injection for the treatment of transverse metastases: A case report
- Malignant hyperthermia: Report on a successful rescue of a case with the highest temperature of 44.2°C
- Anesthetic management of fetal pulmonary valvuloplasty: A case report
- Rapid Communication
- Impact of COVID-19 lockdown on glycemic levels during pregnancy: A retrospective analysis
- Erratum
- Erratum to “Inhibition of miR-21 improves pulmonary vascular responses in bronchopulmonary dysplasia by targeting the DDAH1/ADMA/NO pathway”
- Erratum to: “Fer exacerbates renal fibrosis and can be targeted by miR-29c-3p”
- Retraction
- Retraction of “Study to compare the effect of casirivimab and imdevimab, remdesivir, and favipiravir on progression and multi-organ function of hospitalized COVID-19 patients”
- Retraction of “circ_0062491 alleviates periodontitis via the miR-142-5p/IGF1 axis”
- Retraction of “miR-223-3p alleviates TGF-β-induced epithelial-mesenchymal transition and extracellular matrix deposition by targeting SP3 in endometrial epithelial cells”
- Retraction of “SLCO4A1-AS1 mediates pancreatic cancer development via miR-4673/KIF21B axis”
- Retraction of “circRNA_0001679/miR-338-3p/DUSP16 axis aggravates acute lung injury”
- Retraction of “lncRNA ACTA2-AS1 inhibits malignant phenotypes of gastric cancer cells”
- Special issue Linking Pathobiological Mechanisms to Clinical Application for cardiovascular diseases
- Effect of cardiac rehabilitation therapy on depressed patients with cardiac insufficiency after cardiac surgery
- Special issue The evolving saga of RNAs from bench to bedside - Part I
- FBLIM1 mRNA is a novel prognostic biomarker and is associated with immune infiltrates in glioma
- Special Issue Computational Intelligence Methodologies Meets Recurrent Cancers - Part III
- Development of a machine learning-based signature utilizing inflammatory response genes for predicting prognosis and immune microenvironment in ovarian cancer
Artikel in diesem Heft
- Research Articles
- Exosomes derived from mesenchymal stem cells overexpressing miR-210 inhibits neuronal inflammation and contribute to neurite outgrowth through modulating microglia polarization
- Current situation of acute ST-segment elevation myocardial infarction in a county hospital chest pain center during an epidemic of novel coronavirus pneumonia
- circ-IARS depletion inhibits the progression of non-small-cell lung cancer by circ-IARS/miR-1252-5p/HDGF ceRNA pathway
- circRNA ITGA7 restrains growth and enhances radiosensitivity by up-regulating SMAD4 in colorectal carcinoma
- WDR79 promotes aerobic glycolysis of pancreatic ductal adenocarcinoma (PDAC) by the suppression of SIRT4
- Up-regulation of collagen type V alpha 2 (COL5A2) promotes malignant phenotypes in gastric cancer cell via inducing epithelial–mesenchymal transition (EMT)
- Inhibition of TERC inhibits neural apoptosis and inflammation in spinal cord injury through Akt activation and p-38 inhibition via the miR-34a-5p/XBP-1 axis
- 3D-printed polyether-ether-ketone/n-TiO2 composite enhances the cytocompatibility and osteogenic differentiation of MC3T3-E1 cells by downregulating miR-154-5p
- Propofol-mediated circ_0000735 downregulation restrains tumor growth by decreasing integrin-β1 expression in non-small cell lung cancer
- PVT1/miR-16/CCND1 axis regulates gastric cancer progression
- Silencing of circ_002136 sensitizes gastric cancer to paclitaxel by targeting the miR-16-5p/HMGA1 axis
- Short-term outcomes after simultaneous gastrectomy plus cholecystectomy in gastric cancer: A pooling up analysis
- SCARA5 inhibits oral squamous cell carcinoma via inactivating the STAT3 and PI3K/AKT signaling pathways
- Molecular mechanism by which the Notch signaling pathway regulates autophagy in a rat model of pulmonary fibrosis in pigeon breeder’s lung
- lncRNA TPT1-AS1 promotes cell migration and invasion in esophageal squamous-cell carcinomas by regulating the miR-26a/HMGA1 axis
- SIRT1/APE1 promotes the viability of gastric cancer cells by inhibiting p53 to suppress ferroptosis
- Glycoprotein non-metastatic melanoma B interacts with epidermal growth factor receptor to regulate neural stem cell survival and differentiation
- Treatments for brain metastases from EGFR/ALK-negative/unselected NSCLC: A network meta-analysis
- Association of osteoporosis and skeletal muscle loss with serum type I collagen carboxyl-terminal peptide β glypeptide: A cross-sectional study in elder Chinese population
- circ_0000376 knockdown suppresses non-small cell lung cancer cell tumor properties by the miR-545-3p/PDPK1 pathway
- Delivery in a vertical birth chair supported by freedom of movement during labor: A randomized control trial
- UBE2J1 knockdown promotes cell apoptosis in endometrial cancer via regulating PI3K/AKT and MDM2/p53 signaling
- Metabolic resuscitation therapy in critically ill patients with sepsis and septic shock: A pilot prospective randomized controlled trial
- Lycopene ameliorates locomotor activity and urinary frequency induced by pelvic venous congestion in rats
- UHRF1-induced connexin26 methylation is involved in hearing damage triggered by intermittent hypoxia in neonatal rats
- LINC00511 promotes melanoma progression by targeting miR-610/NUCB2
- Ultra-high-performance liquid chromatography-tandem mass spectrometry analysis of serum metabolomic characteristics in people with different vitamin D levels
- Role of Jumonji domain-containing protein D3 and its inhibitor GSK-J4 in Hashimoto’s thyroiditis
- circ_0014736 induces GPR4 to regulate the biological behaviors of human placental trophoblast cells through miR-942-5p in preeclampsia
- Monitoring of sirolimus in the whole blood samples from pediatric patients with lymphatic anomalies
- Effects of osteogenic growth peptide C-terminal pentapeptide and its analogue on bone remodeling in an osteoporosis rat model
- A novel autophagy-related long non-coding RNAs signature predicting progression-free interval and I-131 therapy benefits in papillary thyroid carcinoma
- WGCNA-based identification of potential targets and pathways in response to treatment in locally advanced breast cancer patients
- Radiomics model using preoperative computed tomography angiography images to differentiate new from old emboli of acute lower limb arterial embolism
- Dysregulated lncRNAs are involved in the progress of myocardial infarction by constructing regulatory networks
- Single-arm trial to evaluate the efficacy and safety of baclofen in treatment of intractable hiccup caused by malignant tumor chemotherapy
- Genetic polymorphisms of MRPS30-DT and NINJ2 may influence lung cancer risk
- Efficacy of immune checkpoint inhibitors in patients with KRAS-mutant advanced non-small cell lung cancer: A retrospective analysis
- Pyroptosis-based risk score predicts prognosis and drug sensitivity in lung adenocarcinoma
- Upregulation of lncRNA LANCL1-AS1 inhibits the progression of non-small-cell lung cancer via the miR-3680-3p/GMFG axis
- CircRANBP17 modulated KDM1A to regulate neuroblastoma progression by sponging miR-27b-3p
- Exosomal miR-93-5p regulated the progression of osteoarthritis by targeting ADAMTS9
- Downregulation of RBM17 enhances cisplatin sensitivity and inhibits cell invasion in human hypopharyngeal cancer cells
- HDAC5-mediated PRAME regulates the proliferation, migration, invasion, and EMT of laryngeal squamous cell carcinoma via the PI3K/AKT/mTOR signaling pathway
- The association between sleep duration, quality, and nonalcoholic fatty liver disease: A cross-sectional study
- Myostatin silencing inhibits podocyte apoptosis in membranous nephropathy through Smad3/PKA/NOX4 signaling pathway
- A novel long noncoding RNA AC125257.1 facilitates colorectal cancer progression by targeting miR-133a-3p/CASC5 axis
- Impact of omicron wave and associated control measures in Shanghai on health management and psychosocial well-being of patients with chronic conditions
- Clinicopathological characteristics and prognosis of young patients aged ≤45 years old with non-small cell lung cancer
- TMT-based comprehensive proteomic profiling identifies serum prognostic signatures of acute myeloid leukemia
- The dose limits of teeth protection for patients with nasopharyngeal carcinoma undergoing radiotherapy based on the early oral health-related quality of life
- miR-30b-5p targeting GRIN2A inhibits hippocampal damage in epilepsy
- Long non-coding RNA AL137789.1 promoted malignant biological behaviors and immune escape of pancreatic carcinoma cells
- IRF6 and FGF1 polymorphisms in non-syndromic cleft lip with or without cleft palate in the Polish population
- Comprehensive analysis of the role of SFXN family in breast cancer
- Efficacy of bronchoscopic intratumoral injection of endostar and cisplatin in lung squamous cell carcinoma patients underwent conventional chemoradiotherapy
- Silencing of long noncoding RNA MIAT inhibits the viability and proliferation of breast cancer cells by promoting miR-378a-5p expression
- AG1024, an IGF-1 receptor inhibitor, ameliorates renal injury in rats with diabetic nephropathy via the SOCS/JAK2/STAT pathway
- Downregulation of KIAA1199 alleviated the activation, proliferation, and migration of hepatic stellate cells by the inhibition of epithelial–mesenchymal transition
- Exendin-4 regulates the MAPK and WNT signaling pathways to alleviate the osteogenic inhibition of periodontal ligament stem cells in a high glucose environment
- Inhibition of glycolysis represses the growth and alleviates the endoplasmic reticulum stress of breast cancer cells by regulating TMTC3
- The function of lncRNA EMX2OS/miR-653-5p and its regulatory mechanism in lung adenocarcinoma
- Tectorigenin alleviates the apoptosis and inflammation in spinal cord injury cell model through inhibiting insulin-like growth factor-binding protein 6
- Ultrasound examination supporting CT or MRI in the evaluation of cervical lymphadenopathy in patients with irradiation-treated head and neck cancer
- F-box and WD repeat domain containing 7 inhibits the activation of hepatic stellate cells by degrading delta-like ligand 1 to block Notch signaling pathway
- Knockdown of circ_0005615 enhances the radiosensitivity of colorectal cancer by regulating the miR-665/NOTCH1 axis
- Long noncoding RNA Mhrt alleviates angiotensin II-induced cardiac hypertrophy phenotypes by mediating the miR-765/Wnt family member 7B pathway
- Effect of miR-499-5p/SOX6 axis on atrial fibrosis in rats with atrial fibrillation
- Cholesterol induces inflammation and reduces glucose utilization
- circ_0004904 regulates the trophoblast cell in preeclampsia via miR-19b-3p/ARRDC3 axis
- NECAB3 promotes the migration and invasion of liver cancer cells through HIF-1α/RIT1 signaling pathway
- The poor performance of cardiovascular risk scores in identifying patients with idiopathic inflammatory myopathies at high cardiovascular risk
- miR-2053 inhibits the growth of ovarian cancer cells by downregulating SOX4
- Nucleophosmin 1 associating with engulfment and cell motility protein 1 regulates hepatocellular carcinoma cell chemotaxis and metastasis
- α-Hederin regulates macrophage polarization to relieve sepsis-induced lung and liver injuries in mice
- Changes of microbiota level in urinary tract infections: A meta-analysis
- Identification of key enzalutamide-resistance-related genes in castration-resistant prostate cancer and verification of RAD51 functions
- Falls during oxaliplatin-based chemotherapy for gastrointestinal malignancies – (lessons learned from) a prospective study
- Outcomes of low-risk birth care during the Covid-19 pandemic: A cohort study from a tertiary care center in Lithuania
- Vitamin D protects intestines from liver cirrhosis-induced inflammation and oxidative stress by inhibiting the TLR4/MyD88/NF-κB signaling pathway
- Integrated transcriptome analysis identifies APPL1/RPS6KB2/GALK1 as immune-related metastasis factors in breast cancer
- Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme
- Circular RNA Circ_0038467 promotes the maturation of miRNA-203 to increase lipopolysaccharide-induced apoptosis of chondrocytes
- An economic evaluation of fine-needle cytology as the primary diagnostic tool in the diagnosis of lymphadenopathy
- Midazolam impedes lung carcinoma cell proliferation and migration via EGFR/MEK/ERK signaling pathway
- Network pharmacology combined with molecular docking and experimental validation to reveal the pharmacological mechanism of naringin against renal fibrosis
- PTPN12 down-regulated by miR-146b-3p gene affects the malignant progression of laryngeal squamous cell carcinoma
- miR-141-3p accelerates ovarian cancer progression and promotes M2-like macrophage polarization by targeting the Keap1-Nrf2 pathway
- lncRNA OIP5-AS1 attenuates the osteoarthritis progression in IL-1β-stimulated chondrocytes
- Overexpression of LINC00607 inhibits cell growth and aggressiveness by regulating the miR-1289/EFNA5 axis in non-small-cell lung cancer
- Subjective well-being in informal caregivers during the COVID-19 pandemic
- Nrf2 protects against myocardial ischemia-reperfusion injury in diabetic rats by inhibiting Drp1-mediated mitochondrial fission
- Unfolded protein response inhibits KAT2B/MLKL-mediated necroptosis of hepatocytes by promoting BMI1 level to ubiquitinate KAT2B
- Bladder cancer screening: The new selection and prediction model
- circNFATC3 facilitated the progression of oral squamous cell carcinoma via the miR-520h/LDHA axis
- Prone position effect in intensive care patients with SARS-COV-2 pneumonia
- Clinical observation on the efficacy of Tongdu Tuina manipulation in the treatment of primary enuresis in children
- Dihydroartemisinin ameliorates cerebral I/R injury in rats via regulating VWF and autophagy-mediated SIRT1/FOXO1 pathway
- Knockdown of circ_0113656 assuages oxidized low-density lipoprotein-induced vascular smooth muscle cell injury through the miR-188-3p/IGF2 pathway
- Low Ang-(1–7) and high des-Arg9 bradykinin serum levels are correlated with cardiovascular risk factors in patients with COVID-19
- Effect of maternal age and body mass index on induction of labor with oral misoprostol for premature rupture of membrane at term: A retrospective cross-sectional study
- Potential protective effects of Huanglian Jiedu Decoction against COVID-19-associated acute kidney injury: A network-based pharmacological and molecular docking study
- Clinical significance of serum MBD3 detection in girls with central precocious puberty
- Clinical features of varicella-zoster virus caused neurological diseases detected by metagenomic next-generation sequencing
- Collagen treatment of complex anorectal fistula: 3 years follow-up
- LncRNA CASC15 inhibition relieves renal fibrosis in diabetic nephropathy through down-regulating SP-A by sponging to miR-424
- Efficacy analysis of empirical bismuth quadruple therapy, high-dose dual therapy, and resistance gene-based triple therapy as a first-line Helicobacter pylori eradication regimen – An open-label, randomized trial
- SMOC2 plays a role in heart failure via regulating TGF-β1/Smad3 pathway-mediated autophagy
- A prospective cohort study of the impact of chronic disease on fall injuries in middle-aged and older adults
- circRNA THBS1 silencing inhibits the malignant biological behavior of cervical cancer cells via the regulation of miR-543/HMGB2 axis
- hsa_circ_0000285 sponging miR-582-3p promotes neuroblastoma progression by regulating the Wnt/β-catenin signaling pathway
- Long non-coding RNA GNAS-AS1 knockdown inhibits proliferation and epithelial–mesenchymal transition of lung adenocarcinoma cells via the microRNA-433-3p/Rab3A axis
- lncRNA UCA1 regulates miR-132/Lrrfip1 axis to promote vascular smooth muscle cell proliferation
- Twenty-four-color full spectrum flow cytometry panel for minimal residual disease detection in acute myeloid leukemia
- Hsa-miR-223-3p participates in the process of anthracycline-induced cardiomyocyte damage by regulating NFIA gene
- Anti-inflammatory effect of ApoE23 on Salmonella typhimurium-induced sepsis in mice
- Analysis of somatic mutations and key driving factors of cervical cancer progression
- Hsa_circ_0028007 regulates the progression of nasopharyngeal carcinoma through the miR-1179/SQLE axis
- Variations in sexual function after laparoendoscopic single-site hysterectomy in women with benign gynecologic diseases
- Effects of pharmacological delay with roxadustat on multi-territory perforator flap survival in rats
- Analysis of heroin effects on calcium channels in rat cardiomyocytes based on transcriptomics and metabolomics
- Risk factors of recurrent bacterial vaginosis among women of reproductive age: A cross-sectional study
- Alkbh5 plays indispensable roles in maintaining self-renewal of hematopoietic stem cells
- Study to compare the effect of casirivimab and imdevimab, remdesivir, and favipiravir on progression and multi-organ function of hospitalized COVID-19 patients
- Correlation between microvessel maturity and ISUP grades assessed using contrast-enhanced transrectal ultrasonography in prostate cancer
- The protective effect of caffeic acid phenethyl ester in the nephrotoxicity induced by α-cypermethrin
- Norepinephrine alleviates cyclosporin A-induced nephrotoxicity by enhancing the expression of SFRP1
- Effect of RUNX1/FOXP3 axis on apoptosis of T and B lymphocytes and immunosuppression in sepsis
- The function of Foxp1 represses β-adrenergic receptor transcription in the occurrence and development of bladder cancer through STAT3 activity
- Risk model and validation of carbapenem-resistant Klebsiella pneumoniae infection in patients with cerebrovascular disease in the ICU
- Calycosin protects against chronic prostatitis in rats via inhibition of the p38MAPK/NF-κB pathway
- Pan-cancer analysis of the PDE4DIP gene with potential prognostic and immunotherapeutic values in multiple cancers including acute myeloid leukemia
- The safety and immunogenicity to inactivated COVID-19 vaccine in patients with hyperlipemia
- Circ-UBR4 regulates the proliferation, migration, inflammation, and apoptosis in ox-LDL-induced vascular smooth muscle cells via miR-515-5p/IGF2 axis
- Clinical characteristics of current COVID-19 rehabilitation outpatients in China
- Luteolin alleviates ulcerative colitis in rats via regulating immune response, oxidative stress, and metabolic profiling
- miR-199a-5p inhibits aortic valve calcification by targeting ATF6 and GRP78 in valve interstitial cells
- The application of iliac fascia space block combined with esketamine intravenous general anesthesia in PFNA surgery of the elderly: A prospective, single-center, controlled trial
- Elevated blood acetoacetate levels reduce major adverse cardiac and cerebrovascular events risk in acute myocardial infarction
- The effects of progesterone on the healing of obstetric anal sphincter damage in female rats
- Identification of cuproptosis-related genes for predicting the development of prostate cancer
- Lumican silencing ameliorates β-glycerophosphate-mediated vascular smooth muscle cell calcification by attenuating the inhibition of APOB on KIF2C activity
- Targeting PTBP1 blocks glutamine metabolism to improve the cisplatin sensitivity of hepatocarcinoma cells through modulating the mRNA stability of glutaminase
- A single center prospective study: Influences of different hip flexion angles on the measurement of lumbar spine bone mineral density by dual energy X-ray absorptiometry
- Clinical analysis of AN69ST membrane continuous venous hemofiltration in the treatment of severe sepsis
- Antibiotics therapy combined with probiotics administered intravaginally for the treatment of bacterial vaginosis: A systematic review and meta-analysis
- Construction of a ceRNA network to reveal a vascular invasion associated prognostic model in hepatocellular carcinoma
- A pan-cancer analysis of STAT3 expression and genetic alterations in human tumors
- A prognostic signature based on seven T-cell-related cell clustering genes in bladder urothelial carcinoma
- Pepsin concentration in oral lavage fluid of rabbit reflux model constructed by dilating the lower esophageal sphincter
- The antihypertensive felodipine shows synergistic activity with immune checkpoint blockade and inhibits tumor growth via NFAT1 in LUSC
- Tanshinone IIA attenuates valvular interstitial cells’ calcification induced by oxidized low density lipoprotein via reducing endoplasmic reticulum stress
- AS-IV enhances the antitumor effects of propofol in NSCLC cells by inhibiting autophagy
- Establishment of two oxaliplatin-resistant gallbladder cancer cell lines and comprehensive analysis of dysregulated genes
- Trial protocol: Feasibility of neuromodulation with connectivity-guided intermittent theta-burst stimulation for improving cognition in multiple sclerosis
- LncRNA LINC00592 mediates the promoter methylation of WIF1 to promote the development of bladder cancer
- Factors associated with gastrointestinal dysmotility in critically ill patients
- Mechanisms by which spinal cord stimulation intervenes in atrial fibrillation: The involvement of the endothelin-1 and nerve growth factor/p75NTR pathways
- Analysis of two-gene signatures and related drugs in small-cell lung cancer by bioinformatics
- Silencing USP19 alleviates cigarette smoke extract-induced mitochondrial dysfunction in BEAS-2B cells by targeting FUNDC1
- Menstrual irregularities associated with COVID-19 vaccines among women in Saudi Arabia: A survey during 2022
- Ferroptosis involves in Schwann cell death in diabetic peripheral neuropathy
- The effect of AQP4 on tau protein aggregation in neurodegeneration and persistent neuroinflammation after cerebral microinfarcts
- Activation of UBEC2 by transcription factor MYBL2 affects DNA damage and promotes gastric cancer progression and cisplatin resistance
- Analysis of clinical characteristics in proximal and distal reflux monitoring among patients with gastroesophageal reflux disease
- Exosomal circ-0020887 and circ-0009590 as novel biomarkers for the diagnosis and prediction of short-term adverse cardiovascular outcomes in STEMI patients
- Upregulated microRNA-429 confers endometrial stromal cell dysfunction by targeting HIF1AN and regulating the HIF1A/VEGF pathway
- Bibliometrics and knowledge map analysis of ultrasound-guided regional anesthesia
- Knockdown of NUPR1 inhibits angiogenesis in lung cancer through IRE1/XBP1 and PERK/eIF2α/ATF4 signaling pathways
- D-dimer trends predict COVID-19 patient’s prognosis: A retrospective chart review study
- WTAP affects intracranial aneurysm progression by regulating m6A methylation modification
- Using of endoscopic polypectomy in patients with diagnosed malignant colorectal polyp – The cross-sectional clinical study
- Anti-S100A4 antibody administration alleviates bronchial epithelial–mesenchymal transition in asthmatic mice
- Prognostic evaluation of system immune-inflammatory index and prognostic nutritional index in double expressor diffuse large B-cell lymphoma
- Prevalence and antibiogram of bacteria causing urinary tract infection among patients with chronic kidney disease
- Reactive oxygen species within the vaginal space: An additional promoter of cervical intraepithelial neoplasia and uterine cervical cancer development?
- Identification of disulfidptosis-related genes and immune infiltration in lower-grade glioma
- A new technique for uterine-preserving pelvic organ prolapse surgery: Laparoscopic rectus abdominis hysteropexy for uterine prolapse by comparing with traditional techniques
- Self-isolation of an Italian long-term care facility during COVID-19 pandemic: A comparison study on care-related infectious episodes
- A comparative study on the overlapping effects of clinically applicable therapeutic interventions in patients with central nervous system damage
- Low intensity extracorporeal shockwave therapy for chronic pelvic pain syndrome: Long-term follow-up
- The diagnostic accuracy of touch imprint cytology for sentinel lymph node metastases of breast cancer: An up-to-date meta-analysis of 4,073 patients
- Mortality associated with Sjögren’s syndrome in the United States in the 1999–2020 period: A multiple cause-of-death study
- CircMMP11 as a prognostic biomarker mediates miR-361-3p/HMGB1 axis to accelerate malignant progression of hepatocellular carcinoma
- Analysis of the clinical characteristics and prognosis of adult de novo acute myeloid leukemia (none APL) with PTPN11 mutations
- KMT2A maintains stemness of gastric cancer cells through regulating Wnt/β-catenin signaling-activated transcriptional factor KLF11
- Evaluation of placental oxygenation by near-infrared spectroscopy in relation to ultrasound maturation grade in physiological term pregnancies
- The role of ultrasonographic findings for PIK3CA-mutated, hormone receptor-positive, human epidermal growth factor receptor-2-negative breast cancer
- Construction of immunogenic cell death-related molecular subtypes and prognostic signature in colorectal cancer
- Long-term prognostic value of high-sensitivity cardiac troponin-I in patients with idiopathic dilated cardiomyopathy
- Establishing a novel Fanconi anemia signaling pathway-associated prognostic model and tumor clustering for pediatric acute myeloid leukemia patients
- Integrative bioinformatics analysis reveals STAT2 as a novel biomarker of inflammation-related cardiac dysfunction in atrial fibrillation
- Adipose-derived stem cells repair radiation-induced chronic lung injury via inhibiting TGF-β1/Smad 3 signaling pathway
- Real-world practice of idiopathic pulmonary fibrosis: Results from a 2000–2016 cohort
- lncRNA LENGA sponges miR-378 to promote myocardial fibrosis in atrial fibrillation
- Diagnostic value of urinary Tamm-Horsfall protein and 24 h urine osmolality for recurrent calcium oxalate stones of the upper urinary tract: Cross-sectional study
- The value of color Doppler ultrasonography combined with serum tumor markers in differential diagnosis of gastric stromal tumor and gastric cancer
- The spike protein of SARS-CoV-2 induces inflammation and EMT of lung epithelial cells and fibroblasts through the upregulation of GADD45A
- Mycophenolate mofetil versus cyclophosphamide plus in patients with connective tissue disease-associated interstitial lung disease: Efficacy and safety analysis
- MiR-1278 targets CALD1 and suppresses the progression of gastric cancer via the MAPK pathway
- Metabolomic analysis of serum short-chain fatty acid concentrations in a mouse of MPTP-induced Parkinson’s disease after dietary supplementation with branched-chain amino acids
- Cimifugin inhibits adipogenesis and TNF-α-induced insulin resistance in 3T3-L1 cells
- Predictors of gastrointestinal complaints in patients on metformin therapy
- Prescribing patterns in patients with chronic obstructive pulmonary disease and atrial fibrillation
- A retrospective analysis of the effect of latent tuberculosis infection on clinical pregnancy outcomes of in vitro fertilization–fresh embryo transferred in infertile women
- Appropriateness and clinical outcomes of short sustained low-efficiency dialysis: A national experience
- miR-29 regulates metabolism by inhibiting JNK-1 expression in non-obese patients with type 2 diabetes mellitus and NAFLD
- Clinical features and management of lymphoepithelial cyst
- Serum VEGF, high-sensitivity CRP, and cystatin-C assist in the diagnosis of type 2 diabetic retinopathy complicated with hyperuricemia
- ENPP1 ameliorates vascular calcification via inhibiting the osteogenic transformation of VSMCs and generating PPi
- Significance of monitoring the levels of thyroid hormone antibodies and glucose and lipid metabolism antibodies in patients suffer from type 2 diabetes
- The causal relationship between immune cells and different kidney diseases: A Mendelian randomization study
- Interleukin 33, soluble suppression of tumorigenicity 2, interleukin 27, and galectin 3 as predictors for outcome in patients admitted to intensive care units
- Identification of diagnostic immune-related gene biomarkers for predicting heart failure after acute myocardial infarction
- Long-term administration of probiotics prevents gastrointestinal mucosal barrier dysfunction in septic mice partly by upregulating the 5-HT degradation pathway
- miR-192 inhibits the activation of hepatic stellate cells by targeting Rictor
- Diagnostic and prognostic value of MR-pro ADM, procalcitonin, and copeptin in sepsis
- Review Articles
- Prenatal diagnosis of fetal defects and its implications on the delivery mode
- Electromagnetic fields exposure on fetal and childhood abnormalities: Systematic review and meta-analysis
- Characteristics of antibiotic resistance mechanisms and genes of Klebsiella pneumoniae
- Saddle pulmonary embolism in the setting of COVID-19 infection: A systematic review of case reports and case series
- Vitamin C and epigenetics: A short physiological overview
- Ebselen: A promising therapy protecting cardiomyocytes from excess iron in iron-overloaded thalassemia patients
- Aspirin versus LMWH for VTE prophylaxis after orthopedic surgery
- Mechanism of rhubarb in the treatment of hyperlipidemia: A recent review
- Surgical management and outcomes of traumatic global brachial plexus injury: A concise review and our center approach
- The progress of autoimmune hepatitis research and future challenges
- METTL16 in human diseases: What should we do next?
- New insights into the prevention of ureteral stents encrustation
- VISTA as a prospective immune checkpoint in gynecological malignant tumors: A review of the literature
- Case Reports
- Mycobacterium xenopi infection of the kidney and lymph nodes: A case report
- Genetic mutation of SLC6A20 (c.1072T > C) in a family with nephrolithiasis: A case report
- Chronic hepatitis B complicated with secondary hemochromatosis was cured clinically: A case report
- Liver abscess complicated with multiple organ invasive infection caused by hematogenous disseminated hypervirulent Klebsiella pneumoniae: A case report
- Urokinase-based lock solutions for catheter salvage: A case of an upcoming kidney transplant recipient
- Two case reports of maturity-onset diabetes of the young type 3 caused by the hepatocyte nuclear factor 1α gene mutation
- Immune checkpoint inhibitor-related pancreatitis: What is known and what is not
- Does total hip arthroplasty result in intercostal nerve injury? A case report and literature review
- Clinicopathological characteristics and diagnosis of hepatic sinusoidal obstruction syndrome caused by Tusanqi – Case report and literature review
- Synchronous triple primary gastrointestinal malignant tumors treated with laparoscopic surgery: A case report
- CT-guided percutaneous microwave ablation combined with bone cement injection for the treatment of transverse metastases: A case report
- Malignant hyperthermia: Report on a successful rescue of a case with the highest temperature of 44.2°C
- Anesthetic management of fetal pulmonary valvuloplasty: A case report
- Rapid Communication
- Impact of COVID-19 lockdown on glycemic levels during pregnancy: A retrospective analysis
- Erratum
- Erratum to “Inhibition of miR-21 improves pulmonary vascular responses in bronchopulmonary dysplasia by targeting the DDAH1/ADMA/NO pathway”
- Erratum to: “Fer exacerbates renal fibrosis and can be targeted by miR-29c-3p”
- Retraction
- Retraction of “Study to compare the effect of casirivimab and imdevimab, remdesivir, and favipiravir on progression and multi-organ function of hospitalized COVID-19 patients”
- Retraction of “circ_0062491 alleviates periodontitis via the miR-142-5p/IGF1 axis”
- Retraction of “miR-223-3p alleviates TGF-β-induced epithelial-mesenchymal transition and extracellular matrix deposition by targeting SP3 in endometrial epithelial cells”
- Retraction of “SLCO4A1-AS1 mediates pancreatic cancer development via miR-4673/KIF21B axis”
- Retraction of “circRNA_0001679/miR-338-3p/DUSP16 axis aggravates acute lung injury”
- Retraction of “lncRNA ACTA2-AS1 inhibits malignant phenotypes of gastric cancer cells”
- Special issue Linking Pathobiological Mechanisms to Clinical Application for cardiovascular diseases
- Effect of cardiac rehabilitation therapy on depressed patients with cardiac insufficiency after cardiac surgery
- Special issue The evolving saga of RNAs from bench to bedside - Part I
- FBLIM1 mRNA is a novel prognostic biomarker and is associated with immune infiltrates in glioma
- Special Issue Computational Intelligence Methodologies Meets Recurrent Cancers - Part III
- Development of a machine learning-based signature utilizing inflammatory response genes for predicting prognosis and immune microenvironment in ovarian cancer