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Degradation of a mixture of 13 polycyclic aromatic hydrocarbons by commercial effective microorganisms

  • Paulina Książek-Trela EMAIL logo , Damian Figura , Dominika Węzka and Ewa Szpyrka EMAIL logo
Published/Copyright: February 5, 2024

Abstract

The study focused on the contribution of effective microorganisms (EM) and their consortia, used in commercial biological preparations and formulations for soil revitalization, to the degradation of a mixture of 13 polycyclic aromatic hydrocarbons (PAHs) commonly found in the soil environment. PAHs, diverse forms of which are present in the environment, never occur individually but always as a part of a chemical mixture. Therefore, the research presented in this article, focusing on the EM impact on the mixture of PAHs, reflects the conditions most similar to natural ones. On Day 35 of the experiment, PAH levels decreased by 75.5–95.5%. The highest PAHs degradation efficiency was achieved for fluorene, with a preparation containing eight bacteria strains from the Bacillus genus: B. coagulans, B. amyloliquefaciens, B. laterosporus, B. licheniformis, B. mucilaginosus, B. megaterium, B. polymyxa, and B. pumilus. All tested preparations containing bacterial consortia and a preparation with the yeast S. cerevisiae intensified the PAHs degradation more effectively than formulations including only the yeast Yarrowia lipolytica or a mixture of Debaryomyces hansenii and Bacillus. The designed and proposed research will contribute to the development of biotechnological methods – bioremediation by microorganisms that are safe for the human and environment health.

1 Introduction

Polycyclic aromatic hydrocarbons (PAHs) are a group of organic compounds that contain at least two joined aromatic rings of a flat surface structure (Figure 1) [1]. They form a group consisting of several hundred chemically related compounds, persistent in the environment, of variable toxicity, and having different structures [2]. PAHs are characterized by their carcinogenic, toxic, and mutagenic effects, they are also very strong immunosuppressants. It is thought that their toxicity mechanism is based on the fact that they disturb functions of cell membranes and enzymatic systems [3].

Figure 1 
               Names and chemical structures of studied PAHs [4].
Figure 1

Names and chemical structures of studied PAHs [4].

PAH are relatively inert hydrophobic compounds that in mammals can be transformed in metabolic processes into highly reactive dihydrodiol epoxides. These diol epoxides react with single strand and double strand DNA, and they may intercalate between base pairs [5]. PAHs can originate from natural and artificial sources, such as oil and gas. PAHs are produced as a result of biological processes and can be formed as a product of burning organic matter, such as wood and food [6]. PAHs are considered to be omnipresent in our environment and are found in soil, water, atmosphere, and air, as well as during food processing and cooking [1,7]. The sources of PAHs found in the soil include, for example, vehicle exhaust gases. Some PAHs come from more distant sources and were transported in the air to their final destination. PAHs at increased concentrations or at levels exceeding specified limits (amounting to 2.979 mg/kg) are observed in soil samples collected in the vicinity of transportation routes and in locations affected by tourist traffic and transport [8]. The majority of PAHs in the soil are bound with its particles, and this influences their mobility. Compounds of a low molecular mass are characterized by their relative mobility in the soil and bioavailability to soil microorganisms. However, it is the compounds of a high molecular mass that are more hazardous, because they are stable and hydrophobic, as well as have a low solubility in water [3,9]. Also, the soil properties influence PAHs susceptibility to sorption on the soil particles. Soil conductivity is an important factor influencing PAHs mobility [10]. These compounds are classified as persistent environmental pollutants, and they often occur as a mixture [11].

PAHs are removed from the environment by several methods, including biodegradation, photochemical degradation, photooxidation, washing out, bioaccumulation, or adsorption. Individual processes influence PAHs in different ways, as each compound has a unique structure and different chemical, biological and physical properties [2,12]. Biodegradation of persistent pollutants and soil bioremediation belong to those biotechnological interventions that are most advantageous, in terms of economic and environmental aspects [1317]. Biodegradation is a preferred and main way for removing PAHs from polluted environments, because it is cost effective and enables complete removal of those compounds [18]. During last decades, a great progress has occurred in studies on PAHs bioremediation [19]. This process involves anaerobic or aerobic biochemical decomposition of organic compounds into simple inorganic compounds by saprobionts, such as bacteria and fungi, but also by yeasts, algae, and protozoa. The bacteria are regarded as key microorganisms for the PAHs degradation [20,21]. Usually, microorganisms are not able to directly decompose PAHs, so the microflora present in a given environment needs to adapt to the PAHs degradation. This is particularly important, taking into account low PAHs solubility in water that results in their low bioavailability to microorganisms [3]. Microorganisms also need time to develop the ability to produce necessary enzymes, depending on a type of microorganisms and properties of PAHs [22]. An individual bacterium or fungus is not able to degrade all contaminations. Thus, biodegradation is a multi-stage process occurring with a support of a large number of microorganisms that act synergistically [23]. PAHs of a low molecular weight (containing two or three fused benzene rings) can be easily degraded by microorganisms. PAHs of a high molecular weight, containing at least four rings, are resistant to biodegradation; therefore, they accumulate in the ecosystem [19,24,25]. Microorganisms degrading PAHs can metabolize PAHs as a sole source of energy and carbon in the soil [26].

Many studies on PAHs biodegradation focus on bacteria from genera Nocardia, Pseudomonas, Gordonia, Micrococcus, Rhodococcus, Arthrobacter, Mycobacterium, Flavobacterium, Corynebacterium, Klebsiella, Alcaligenes, and Bacillus, as well as fungi from genera Penicillium, Aspergillus, Trichoderma, Candida, and Fusarium [2731]. While there are many reports on the PAHs degradation by microorganisms, including bacteria and fungi, the publications reporting the successful degradation of PAHs using yeasts are relatively scarce. The effect of yeasts on the degradation of crude oil or PAHs from petroleum-contaminated sites was analyzed in a few studies on Saccharomyces cerevisiae, Yarrowia lipolytica, Hanseniaspora valbyensis, H. opuntiae, and Debaryomyces hansenii [3235]. Abioye and Ferreira [32,33] found that yeasts are effective in biodegradation of crude oil, while Mandal [34,35] analyzed decomposition of two PAHs –  – benzo[a]pyrene and benzo[ghi]perylene by a yeast consortium, and its effectiveness was at a level of 76 and 64%, respectively.

PAH bioremediation involves enzymes from bacteria, fungi, yeasts, and other living organisms. Biodegradation using enzymes is efficient and selective, due to higher reaction rates and the capability to catalyze reactions at a wide range of temperatures and pH values [3]. Enzymes responsible for the PAHs degradation include oxygenase, dehydrogenase, lignin peroxidase, manganese peroxidase, laccases, and phenoloxidases [36,37]. Dehydrogenase is an enzyme found in all viable microbial cells. Its activity is a measure of the metabolic state of soil microorganisms [38]. The dehydrogenase activity (DHA) is one of the most adequate, important, and sensitive bioindicators, related to the soil fertility [39]. This activity depends on the same factors that influence the abundance and activity of microorganisms. Besides, it is well known that pesticides, PAHs, and other persistent soil pollutants inhibit DHA [3941]. Several environmental factors such as the soil moisture content, the oxidation–reduction potential (ORP), the pH, the temperature, the organic matter content, contamination with PAHs or pesticides, and soil fertilization, can significantly affect DHA in the soil [39]. The ORP is an important environmental factor, which reflects the tendency of an environment to receive or supply electrons in a solution [42]. ORP plays a crucial role in regulating the microbial activity, and affects the soil enzymatic activity, especially DHA [43]. Generally, the activity of enzymes tends to increase with the soil pH [44,45]. It was shown that the pH within the acidic range resulted in a strong DHA inhibition, when compared to alkaline soils [39]. The pollution levels are frequently linked to the pH of contaminated sites, as microorganisms may not be able to transform PAHs under acidic or alkaline conditions. The extreme pH values that can be observed in some soils negatively influence the ability of microbial populations to degrade PAHs [46].

The aim of this experiment was to demonstrate the effect of six commercial formulations with effective microorganisms (EM) and one with a mixture of yeasts on the degradation in the soil of 13 substances belonging to PAHs. Furthermore, the analyses focused on shifts in the soil pH, the ORP, and the activity of dehydrogenases (DHA). The novelty of the approach used in this study lies in the analysis of biodegradation for the mixture of PAHs, instead of individual substances, and in the use of commercial preparations. These preparations promote the pro-environmental method of agricultural production – organic farming, and are easily accessible and safe for the environment and humans; therefore, they can be generally used. To this date, the influence of various microorganisms on the degradation of one or several PAHs has been studied. There are many different PAH compounds in the natural environment which never occur individually, but as a chemical mixture. Therefore, the research presented in this article, focusing on the EM influence on the mixture of 13 PAHs, reflects the conditions most similar to natural ones. The presented study also shows differences in the decomposition of individual PAHs by single microorganisms and by consortia of bacteria and yeasts. To our knowledge, no data and publications are available on the influence of tested EM formulations on the degradation of a PAHs mixture in the soil. The proposed research would be advantageous for the development of bioremediation of soils polluted with PAHs. The obtained results can significantly contribute to the development of such disciplines as environmental protection, biotechnology, agronomy, toxicology, and microbiology.

2 Materials and methods

Six commercial formulations containing EM and a mixture of formulations containing yeasts were used in the study. These are biological preparations and formulations for soil revitalization, having a potential to degrade persistent environmental pollutants. They are easily accessible and safe for the environment and humans; therefore, they can be generally used.

Table 1 provides the most important information about the formulations.

Table 1

Names and composition of EM formulations [4752]

Formulation name (name of the manufacturer, country of origin) Formulation composition
Formulation 1EmFarma Plus™ (ProBiotics, Poland) Bacteria from the genus: Bifidobacterium, Lactococcus, Lactobacillus, Bacillus, Rhodopseudomonas, and Streptococcus, yeasts S. cerevisiae, revitalized water, rock salt, organic sugar cane molasses, and a mineral complex
Formulation 2Rewital PRO+ (BIOGEN, Poland) Bacteria from the genus: Streptomyces, Bacillus, Pseudomonas, Cellulomonas, Rhodococcus, Pseudonocardia, Arthrobacter, and Paenibacillus, starter medium
Formulation 3BACILLUS VIP Probiotic Microorganisms (AGROBIOS, Poland) Eight bacteria strains from the Bacillus genus: B. coagulans, B. amyloliquefaciens, B. laterosporus, B. licheniformis, B. mucilaginosus, B. megaterium, B. polymyxa, and B. pumilus, revitalized water and organic sugar cane molasses
Formulation 4Myco Sin ® (Biocont, Poland) Aluminum sulfate tetradecahydrate, inactive, ground, dried yeast – S. cerevisiae, and dry horsetail extract (Equisetum arvense L.)
Formulation 5Biopuls Fusion ® (Microlife, Poland) Yeast strains Y. lipolytica
Formulation 6Biopuls Cinderella (Microlife, Poland) Yeast D. hansenii and its metabolites, bacteria from Bacillus genus
Formulation 7 Mix of yeast Formulations 4, 5, and 6

2.1 Reagents

Acetone, n-hexane of analytical grade, and petroleum ether for GC were obtained from Chempur, Poland. Salts used for extraction using the QuEChERS method included sodium chloride, magnesium sulfate, disodium citrate sesquihydrate, trisodium citrate (Chempur, Poland), together with sorbents used for clean-up – primary and secondary amines, PSA (Agilent, USA), and magnesium sulfate (Chempur, Poland). A certified mixture of standard solutions, EPA 525 PAHs Mix B, was obtained from Sigma-Aldrich, USA. Furthermore, methanol LC-MS (Honeywell, USA), 2,3,5-triphenyltetrazolium chloride – TTC (Sigma-Aldrich, USA) and 1,3,5-triphenyl tetrazolium formazan – TPF (Tokyo Chemical Industry, Japan) were used for the DHA analysis.

2.2 Soil samples preparation

In the experiment, a commercial universal soil recommended for the horticultural crop was used, containing high and low moor peat, sand, pine bark, dolomite, perlite, and mineral fertilizers. The soil had the salt content at the level of 0.5–1.0 g KCl/dm3 (the pH of 6.0–7.3) (PPUH Zielona Oaza I, Brzozów, Poland).

The studies were performed in the constant conditions of the ambient temperature of 21 ± 1°C and the soil humidity of about 70–74%.

Soil samples of 200 g were weighted into transparent 2 L polypropylene containers. About 40 mL of PAHs aqueous solution at 0.5 mg/kg was then added to each container. The samples were thoroughly mixed. On Day 4 of the experiment, PAHs content in each container was analyzed. These values were taken as initial and treated as 100% for calculating degradation on Day 35 of the experiment. Then, 40 mL of the EM formulations was added to each sample, as shown in the study plan presented in Table 2. The control samples, which contained only the studied PAHs, were spiked with water. All samples were mixed and analyzed in three replicates.

Table 2

Study plan and EM formulation doses

Sample number Sample content Formulation dose
1–3 Soil + PAHs
4–6 Soil + PAHs + Formulation 1 200 mL/L
7–9 Soil + PAHs + Formulation 2 10 mL/L
10–12 Soil + PAHs + Formulation 3 8 mL/L
13–15 Soil + PAHs + Formulation 4 50 g/L
16–18 Soil + PAHs + Formulation 5 100 mL/L
19–21 Soil + PAHs + Formulation 6 10 g/L
22–24 Soil + PAHs + Formulation 7 50 g/L, 100 mL/L, 10 g/L

The samples for analyses of PAHs were taken 4, 14, and 35 days after the PAHs application. The water content was measured using the weighing method, after drying at 105°C (S–40, Alpina, Poland). The pH and the ORP were determined using a digital meter ORP/pH AD14 (ADWA, Poland).

Figures S14 and S15 show shifts in pH values and the ORP in the soil samples on Days 4, 14, and 35 of the experiment.

2.3 Chromatographic analysis

Samples for PAHs analyses were prepared using a modification of the method described in PN–EN 15662: 2018-06. Foods of plant origin [53,54]. In brief, 5 g of the soil with 10 mL of water and 10 mL of the acetone: hexane mixture (1:4 v/v) were vortexed for 1 min (BenchMixerTM, Benchmark, USA). Next, extraction salts: 1 g of sodium chloride, 4 g of magnesium sulfate, 0.5 g of disodium citrate sesquihydrate, and 1 g of trisodium citrate were added. Then, samples were vortexed for 1 min and centrifuged at 3,500 rpm (5804R, Eppendorf, Hamburg, Germany) for 5 min. Then, 5 mL aliquots of the sample extract were poured into 15 mL polypropylene centrifuge tubes, containing sorbents for cleanup (150 mg of PSA and 900 mg of magnesium sulfate). The samples were vigorously shaken for 0.5 min and then centrifuged at 3,500 rpm for 5 min. PAHs in the soil extracts were analyzed with a 7890A gas chromatograph (Agilent Technologies, Palo Alto, CA, USA) coupled with a mass detector, model 7000 (GC-MS/MS QqQ). Software Mass Hunter, B.07.06, was used for data processing and data acquisition [54].

2.4 Assessment of DHA

DHA determination in the soil samples was conducted according to Casida et al., Tabatabai, and Wołejko et al. [5557]. In brief, 4 mL of water and 1 mL of 3% aqueous solution of TTC were added to 6 g soil samples. Samples were then incubated in the dark at 37°C for 20 h. Next, 20 mL of methanol were added, vortexed for 1 min, centrifuged, and filtered. The DHA measurements were conducted at 485 nm with the spectrophotometer Cary 300 Bio (VARIAN, USA). The results were presented as micromoles of TPF/1 g of dry soil per 20 h.

2.5 Statistical analysis of results

Statistically significant differences between samples with and without biological formulations were established with the Student’s test (Excel Microsoft 365 program) for each individual sampling day. p values that are statistically significant, are presented in Figures S1, S2, S4–S8, S10, S12, S13, and S16 as p < 0.001 (***), p < 0.01 (**), and p < 0.05 (*).

3 Results and discussion

The effect that commercial formulations containing EM have on the degradation of 13 PAHs in the soil is described. Additionally, the analyses covered shifts in the soil pH, the ORP, and the DHA.

Microorganisms that are indigenous to a petroleum contaminated site were reported to be more effective in remediation of the environment after spills of oil and other pollutants, than the nonindigenous ones [5862]. Many studies concern PAHs biodegradation by microorganisms isolated from different sites contaminated with crude oil. The tested organisms included bacteria belonging to genera Nocardia, Pseudomonas, Gordonia, Micrococcus, Rhodococcus, Arthrobacter, Mycobacterium, Flavobacterium, Corynebacterium, Klebsiella, Alcaligenes, and Bacillus, and fungi such as Penicillium, Aspergillus, Trichoderma, Candida, and Fusarium [2731].

3.1 EM formulations influence on PAHs degradation

The study analyzed the effect of EM microorganisms from the following formulations: EmFarma Plus™, Rewital PRO+, BACILLUS VIP, Myco Sin®, Biopuls Fusion®, and Biopuls Cinderella, and a mix of preparations: Myco Sin®, Biopuls Fusion®, and Biopuls Cinderella, on the degradation of 13 PAHs in the soil. Below, we present a review of the literature on the PAHs degradation by microorganisms. Reports concerning the degradation of individual PAHs by microorganisms or by consortia of microorganism in the soil are available. However, to this date, there are no studies concerning the influence of microorganisms found in the studied formulations on the degradation of a mixture of 13 PAHs in the soil.

Table 3 shows a percentage degradation of the studied PAHs after EM formulations were used, on Day 35 of experiment, when compared to the control samples. For some of PAHs, in the case of Formulations 5, 6, and 7, the degradation was slightly lower than for control, but these differences were not statistically important at the end of the experiment on Day 35. This could be caused by a decrease in pH in soil samples after the application of preparations 5, 6, and 7, compared to the other formulations. According to Pawar [46], extremes in the pH, which can be observed in some soils, can negatively influence the ability of microbial populations to degrade PAHs.

Table 3

Percentage PAHs degradation (%) after formulations with EM were applied on Day 35 versus the initial concentrations

Analyzed substance Control Formulation 1 Formulation 2 Formulation 3 Formulation 4 Formulation 5 Formulation 6 Formulation 7
Acenaphthylene 82.6 91.9 92.7 91.8 91.3 90.7 89.2 87.5
Anthracene 90.3 94.5 93.9 95.1 92.2 92.3 91.4 92.9
Benzo[a]anthracene 85.2 90.7 90.4 90.8 88.9 89.6 90.3 88.2
Benzo[a]pyrene 77.5 87.3 85.1 83.6 85.2 85.3 82.0 86.2
Benzo[b]fluoranthene 79.0 88.4 86.4 84.9 86.6 86.2 78.5 83.8
Benzo[k]fluoranthene 75.1 86.8 85.1 83.3 84.9 84.5 75.5 81.5
Benzo[ghi]perylene 79.8 86.3 82.7 82.9 81.4 79.3 79.3 76.6
Chrysene 75.9 85.5 80.8 82.0 81.7 80.3 80.8 82.6
Dibenzo[a,h]anthracene 80.5 87.9 85.4 82.0 85.6 83.2 77.5 84.0
Fluorene 92.6 94.6 93.5 95.5 93.3 92.0 91.8 91.8
Indeno[1,2,3-cd] pyrene 70.0 85.1 83.7 85.6 85.3 87.0 84.4 83.3
Phenanthrene 85.3 90.8 87.8 88.6 87.8 83.6 83.1 83.8
Pyrene 84.2 91.8 90.1 90.7 89.3 88.9 85.9 87.3

Figures S1–S13 present PAHs decomposition on Day 4 (before application of EM formulation) and in the samples spiked with EM formulations on Days 14 and 35 of the experiment.

The results and the literature review of the 13 PAHs studied are presented below. No correlation was found between the number of rings and the partition coefficient LogP, and the rate of the tested PAHs degradation. The results were presented according to the molecular mass.

3.1.1 Acenaphthylene

On Day 4 of the study, the acenaphthylene concentration ranged between 0.052 and 0.089 mg/kg. On Day 14 of the study, the acenaphthylene concentration was the highest in the control samples and amounted to 0.02 mg/kg, while it reached the lowest level in the samples with Formulations 4 and 5, amounting to 0.013 mg/kg. On the last, 35th day of the study, the acenaphthylene concentration was also the highest in the control samples (0.014 mg/kg), and it dropped to the minimum level in the samples treated with Formulations 4 and 5 (0.005 mg/kg) (Figure S1).

The use of all EM formulations accelerated the acenaphthylene degradation, when compared to the control. The achieved degradation was the lowest with Formulation 7 (yeast mix – 87.5%) and the highest (92.7%) with Formulation 2, containing bacteria from Arthrobacter, Bacillus, Cellulomonas, Paenibacillus, Pseudonocardia, Streptomyces, Pseudomonas, and Rhodococcus genera (it increased the rate of the acenaphthylene decomposition by 10.1% versus the control) (Table 3).

Rocha et al. analyzed the influence of Pleurotus ostreatus (the oyster fungus, edible mushroom) on the acenaphthylene degradation in the sandy soil. P. ostreatus degraded 57.7% of this compound in the soil enriched at the level of 30 mg/kg, and 65.8% of acenaphthylene when the soil was enriched at the level of 60 mg/kg, after the incubation period of 15 days [63].

Barnes et al. investigated the degradation of crude oil and associated PAHs using ten fungal cultures isolated from the aquatic environment: Penicillium citrinum, Acremonium sclerotigenum, Aspergillus polyporicola, Aspergillus versicolor, Fusarium equiseti, Fusarium sp., Aspergillus sp., Aspergillus favus, and Aspergillus sydowii. The studies were conducted in 20 mL of the mineral salt medium (MSM) containing 1% (w/v) crude oil as the sole source of carbon for isolates. The experimental flasks were incubated at 28°C with constant shaking at 80 rpm, for 23 days. Among the ten isolates studied, 100% of acenaphthylene was removed from six isolates [64].

3.1.2 Fluorene

On Day 4, the fluorene concentration ranged from 0.031 to 0.072 mg/kg. On Day 14, the noted substance concentration was the highest in the control samples, amounting to 0.013 mg/kg, and the lowest in the samples treated with Formulations 4 and 5, of 0.008 mg/kg. On Day 35 of the experiment, fluorene was at the highest concentration, of 0.004 mg/kg, in the control samples and after application of Formulations 1 and 2, and at the lowest level, of 0.002 mg/kg, in the samples treated with Formulation 3 (Figure S10).

Fluorene proved to be a persistent substance. After the use of Formulations 5, 6, and 7, its degradation was lower versus the control (91.8–92.0%). The highest degradation was obtained for Formulation 3, at the level of 95.5% (Table 3).

Barnes et al. studied the degradation of the fluorene using ten fungal cultures, isolated from the aquatic environment: P. citrinum, A. sclerotigenum, A. polyporicola, A. versicolor, F. equiseti, Fusarium sp., Aspergillus sp., A. favus, and A. sydowii. Among the ten isolates studied, the degradation level ranged from 53.7 to 100% with Aspergillus sp., after the incubation period of 23 days [64].

Bankole et al. investigated the fluorene degradation efficiency of the marine derived filamentous fungus, Mucor irregularis, bpo1 strain. Optimization of the vital constituents of the MSM used in the study resulted in the fluorene degradation at the rate of 79.8%. The enhanced fluorene degradation efficiency (82.5%) was recorded when the optimized process variables were subjected to growth-linked validation experiments. Furthermore, the activity of enzymes, including laccase, manganese peroxidase, and lignin peroxidase, was demonstrated [65].

Nam et al. researched the influence of Sphingobacterium sp. KM-02, isolated from the soil polluted with PAHs near a mine-impacted area, on the fluorene degradation. During culturing of microorganisms with fluorene as the only source of carbon, decomposition of 78.4% of that PAH occurred within 120 h. Additionally, Sphingobacterium sp. KM-02 ability to biodegrade fluorene at a level of 100 mg/kg in the soil in the laboratory conditions was verified. During 20 days of the experiment, 65.6% of fluorene was decomposed [66].

Forty-seven fungal strains were isolated from the soil polluted with PAHs and the fluorene degradation rate was verified. The most productive of isolated strains was Absidia cylindrospora, and it was found that over 90% of fluorene was degraded within 288 h, while the process required 576 h when no microorganisms were present [67].

3.1.3 Anthracene

Another studied substance was anthracene, and on Day 4, its concentration was in the range from 0.028 to 0.072 mg/kg. On Day 14, the noted substance concentration was the highest in the control samples, amounting to 0.017 mg/kg, while it was the lowest, of 0.008 mg/kg, in the samples treated with Formulation 5. On the last day of the study, anthracene also was at the highest concentration in the control samples, of 0.005 mg/kg, and at the minimum level of 0.002 mg/kg in the samples treated with Formulations 3, 6, and 7 (Figure S2).

Also in the case of anthracene, EM formulations accelerated its degradation, and in their presence, it ranged between 91.4 and 95.1%. The anthracene degradation was the highest following the treatment with Formulation 3, which contained eight bacteria strains from the Bacillus genus (Table 3).

The influence of microorganisms isolated from the soil long polluted with creosote oil on the anthracene degradation was studied by Smułek et al. The level of this compound degradation ranged from 30 to 70%. The highest degradation was achieved for Pseudomonas mosselii and Pseudomonas mendocina [68].

Krivobok et al. isolated from the soil 39 strains of Micromycetes fungi, described as effectively degrading PAHs. Nineteen of them degraded at least 50% of anthracene. The highest degradation was obtained for Rhizopus arrhizus – 95% and Cryphonectria parasitica – 96%. Furthermore, studies were also conducted on other fungal species able to degrade anthracene, including Rhizoctonia solani (86%), Ceriporiopsis subvermispora (88%), Oxysporus sp. (94%), Cladosporium herbarum (85%), Drechslera spicifera (79%), Verticillium lecanii (77%), Coniothyrium sporulosum (57%), and Cunninghamella spp. (78–87%) [69].

Two strains of bacteria able to degrade anthracene – Ralstonia pickettii JANC1A and Thermomonas haemolytica JANC2B, were isolated and identified. They were isolated using a method for enrichment of the contaminated soil in the mineral medium. The initial anthracene concentration amounted to 100 mg/kg. It was demonstrated that 50 and 75% of anthracene was degraded after 8 and 20 days, respectively [70].

Wu et al. investigated the anthracene degradation by fungi isolated from the environment of PAH-contaminated mangrove sediments in Ma Wan, Hong Kong. Anthracene at the concentration of 50 mg/L was added to the MSM for initial screening of PAH-degrading fungi, and finally two fungal species capable of using the studied PAH as the sole source of carbon were isolated and identified as Fusarium solani – MAS2 and MBS1 strains. Anthracene removal reached 40% of the added amount after 40 days of incubation in samples with MAS2 strain [71].

3.1.4 Phenanthrene

On Day 4, the phenanthrene concentration ranged from 0.03 to 0.067 mg/kg. On Day 14, the highest substance level was 0.016 mg/kg and it was noted in the control samples, while its concentration was the lowest, of 0.009 mg/kg, in Formulations 4 and 5. On Day 35 of the study, phenanthrene reached the highest concentration of 0.008 mg/kg in the control samples, and the lowest, of 0.004 mg/kg, in the samples treated with Formulation 4 (Figure S12).

The use of Formulations 5, 6, and 7 slowed the phenanthrene degradation process versus the control level; however, these differences were not statistically significant for Day 35. The remaining formulations accelerated the degradation. The highest degradation, of 90.8%, was achieved with Formulation 1 (Table 3).

The phenanthrene biodegradation by Bacillus. licheniformis STK 01, Bacillus subtilis STK 02, and Pseudomonas aeruginosa STK 03, microorganisms that were isolated from an oil spill site, was studied. The phenanthrene concentration amounted to 50 mg/kg of the soil. After the experiment period of 60 days, 91.43, 84.83, and 83.97% of phenanthrene were decomposed by B. licheniformis, B. subtilis, and P. aeruginosa, respectively. When B. licheniformis and B. subtilis were used, 90.34% of phenanthrene was decomposed [72].

Nzila et al. isolated and characterized two bacterial strains able to degrade phenanthrene – Pseudomonas citronellolis PHC3Z1A and Stenotrophomonas maltophilia JPHC3Z2B. The initial phenanthrene concentration (C 0 = 100 ppm) was degraded in 50% after 7 days and in 75% after 15 days [70].

A fungus, Fusarium sp., was isolated from soils polluted with crude oil (Liaohe Oil Field, China). The influence of that microorganism on the phenanthrene and pyrene degradation was studied. For both PAHs, four different initial concentrations, 10, 50, 100, and 200 mg/kg, were used. It was demonstrated that when higher initial concentrations were used, of 100 and 200 mg/kg, the phenanthrene degradation was higher, at the level of 83.7 and 70%, respectively (after 350 h), than when its initial levels were lower. For pyrene, biodegradation was the highest, of 74.6%, for the initial pyrene level of 100 mg/kg, and the lowest, of 32.1%, when it was at the level of 200 mg/kg [73].

Barnes et al. investigated the phenanthrene degradation using ten fungal cultures isolated from the aquatic environment: P. citrinum, A. sclerotigenum, A. polyporicola, A. versicolor, F. equiseti, Fusarium sp., Aspergillus sp., A. favus, and A. sydowii. Among the ten isolates studied, the degradation ranged from 22.1 to 100% after 23 days of incubation. The highest degradation level was achieved with F. equiseti [64].

The microbial degradation of the phenanthrene by screened fungi found in the natural environment was conducted, to select fungi for the phenanthrene bioremediation. The highest degradation level, of 72%, was obtained when Trichoderma sp. S019 was incubated for 30 days after 0.1 mM of phenanthrene were added to the liquid medium, while it reached 31% when 1 mM of the studied PAH was added [74].

3.1.5 Pyrene

On Day 4 of the study, the highest pyrene concentration amounted to 0.05 mg/kg, and the lowest amounted to 0.019 mg/kg. On Day 14 of the study, pyrene reached its highest level of 0.011 mg/kg in the control samples, and the lowest level, of 0.006 mg/kg, in the samples treated with Formulation 5. On the last day of the study, pyrene was at the highest level, of 0.006 mg/kg, in the control samples, and at the lowest concentration of 0.003 mg/kg in the samples treated with Formulations 3, 4, 5, and 6 (Figure S13).

It was observed for pyrene that all studied EM formulations accelerated its degradation, which ranged between 85.9 and 91.8%. The degradation was the highest after treatment with Formulation 1, and the lowest for Formulation 6 (Table 3).

The studies on the influence of the immobilized (a hybrid carrier consisting of polyvinyl alcohol with sodium alginate and activated carbon) fungi, Aspergillus niger, Trichoderma sp., and Fusarium sp., on the pyrene degradation were conducted by Wang et al. The initial pyrene concentration was 100 mg/kg. After 240 h of incubation, the pyrene degradation amounted to 63% for Trichoderma sp., 49% for A. niger, and 69% for Fusarium sp. In the case of the synergistic effect of A. niger and Fusarium sp., the highest pyrene degradation of 81% was recorded [75].

A strain of the bacterium Achromobacter xylosoxidans PY4 was isolated from a polluted area (Jubail, Saudi Arabia) and characterized. It was demonstrated that this bacterium is able to metabolize and use pyrene as its only source of carbon. The PY4 strain was capable of decomposing 80% of pyrene at the initial level of 100 mg/L in 25 days [76].

Barnes et al. analyzed the pyrene degradation using ten fungal cultures, isolated from the aquatic environment, of P. citrinum, A. sclerotigenum, A. polyporicola, A. versicolor, F. equiseti, Fusarium sp., Aspergillus sp., A. favus, and A. sydowii. Among the ten isolates studied, the degradation ranged from 45.7 to 100% after 23 days of incubation. The maximum degradation level was observed when F. equiseti and P. citrinum were used [64].

The APC5 strain of Coriolopsis byrsina, white rot fungi, was isolated in the Surguja district of Chhattisgarh, India, and used in the studies on the pyrene biodegradation. The maximum degradation reached the level of 96.1%. C. byrsina produced a significant amount of ligninolytic enzyme in the mineral salt broth (MSB) containing pyrene [77].

Hadibarata et al. studied the pyrene degradation by Candida sp. S1, the yeast isolated from the tropical rain forest. Biodegradation was at the level of 35% after 15 days, but the percentage of pyrene decomposition increased up to 75% with 24 g/L of sodium chloride added, and decreased as the salinity increased. Under the acidic conditions, biodegradation increased up to 60% at the pH of 5. It was also found that higher glucose concentrations, exceeding 10 g/L, had no significant effect on the pyrene biodegradation, while agitation proved to have greater influence [31].

3.1.6 Chrysene

On Day 4 of the study, the highest chrysene concentration amounted to 0.043 mg/kg, and the lowest amounted to 0.021 mg/kg. On Day 14, the substance was at the maximum concentration of 0.012 mg/kg in the samples treated with Formulation 7, and at the lowest, of 0.004 mg/kg, in the samples containing Formulation 5. On Day 35 of the study, chrysene level was the highest, of 0.008 mg/kg, in the control samples, and the lowest, of 0.004 mg/kg, in the samples treated with Formulations 4, 5, and 6 (Figure S8).

The use of all EM formulations accelerated the chrysene decomposition. The highest degradation, of 85.5%, was obtained for Formulation 1, while it was the lowest, of 80.3%, for Formulation 5 (yeast strains Y. lipolytica) (it accelerated the chrysene decomposition by 9.6% versus the control) (Table 3).

A fungus, Polyporus sp. S133, isolated from the soil polluted with crude oil, was used in the studies on the chrysene biodegradation in a culture without and with a synthetic surfactant (Tween 80). The maximum degradation intensity, of 86%, was achieved for the fungus incubated with 0.5% Tween 80 solution for 30 days. When the microorganism was incubated without that surfactant, the degradation was only at a level of 30% [78].

Similar studies were conducted in a liquid MSB. The maximum rate of the chrysene degradation, of 65%, was achieved when Polyporus sp. S133 was used with an addition of polypeptone as a source of vitamins, carbon, and amino acids for the microorganisms, when compared to the 24% degradation in the pure MSB medium [79].

Other research focused on the influence of a bacterial consortium on the chrysene degradation in the soil polluted with crude oil. The consortium consisting of Bacillus cereus and Pseudomonas putida 10 and 15% bacteria with ratios – 2:3, 1:1, 3:2 was added into a slurry bioreactor. The initial chrysene concentration amounted to 24.48 ng/µL. After 49 days of the experiment, the chrysene degradation was at the level 67.01, 69.1, and 64.54%, in the case of the 10% bacterial consortium, and of 89.39, 93.58, and 91.73%, for the 15% bacterial consortium [80].

In yet another study, Vaidya et al. developed a bacterial consortium consisting of Rhodococcus sp., ASDC1; Bacillus sp. ASDC2; and Burkholderia sp. to study the chrysene degradation. Chrysene was utilized by the consortium as a sole source of carbon and energy, with the maximum degradation rate of 1.5 mg/L/day and the maximum growth rate of 0.125/h, under optimized conditions of the pH of 7.0, the temperature of 37°C under aeration of 150 rpm, on gyrating shaking. The maximum degradation of 96% was obtained in the polluted, non-sterile soil sediment [81].

3.1.7 Benzo[a]anthracene

On Day 4, the benzo[a]anthracene level in the soil samples was between 0.016 and 0.041 mg/kg. On Day 14 of the experiment, the maximum concentration was noted in the control samples and following treatment with Formulation 1, amounting to 0.008 mg/kg, while it was the lowest, of 0.004 mg/kg, after treatment with Formulations 3, 4, and 5. On the last day of the study, the benzo[a]anthracene level was the highest in the control samples and amounted to 0.005 mg/kg, while it was the lowest after treatment with Formulations 4, 5, and 6, and amounted to 0.002 mg/kg (Figure S3).

The benzo[a]anthracene decomposition was accelerated by the use of all formulations. It was the highest, of 90.8%, after treatment with Formulation 3, and the lowest, of 88.2%, with Formulation 7 (Table 3).

The potential of benzo[a]anthracene biodegradation by Panebacillus sp. strain HD1PAH, a new strain isolated from the soil polluted with crude oil, was studied by Deka and Lahkar. The study was conducted in laboratory conditions for 144 h, and samples were collected seven times. Benzo[a]anthracene was the only source of carbon, at the level of 10 mg/L in the MSM. The maximum degradation of that PAH by the Panebacillus sp. strain HD1PAH was 82.01% during 144 h of incubation [82].

Rocha et al. also analyzed the P. ostreatus influence on the benzo[a]anthracene degradation in the soil. P. ostreatus degraded about 90% of this compound in the soil enriched at the level of 30 mg/kg, and 80% of benzo[a]anthracene when the soil was enriched at the level of 60 mg/kg after a period of incubation of 15 days [63].

Barnes et al. analyzed the degradation of benzo[a]anthracene using ten fungal cultures, isolated from the aquatic environment: P. citrinum, A. sclerotigenum, A. polyporicola, A.versicolor, F. equiseti, Fusarium sp., Aspergillus sp., A. favus, and A. sydowii. Among the ten isolates studied, nine isolates achieved a 100% removal of benzo[a]anthracene after incubation of 23 days [64].

Wu et al. studied the degradation of benzo[a]anthracene by fungi isolated from the environment of PAH-contaminated mangrove sediments in Ma Wan, Hong Kong. Benzo[a]anthracene at the concentration of 20 mg/L was added to the MSM for initial screening of PAH-degrading fungi; and finally, two fungal species capable of using the studied PAH as the sole source of carbon were isolated and identified as F. solani – MAS2 and MBS1 strains. Benzo[a]anthracene removal reached 60% of the added amount after 40 days of incubation in the samples containing the MBS1 strain [71].

3.1.8 Benzo[a]pyrene

On Day 4 of the study, the benzo[a]pyrene level was the highest of 0.039 mg/kg, and the lowest of 0.015 mg/kg. On Day 14 of the study, the compound concentration was the highest in the control samples and those with Formulation 1 (0.01 mg/kg), and the lowest in the samples spiked with Formulation 5 (0.004 mg/kg). On the last day of the study, the benzo[a]pyrene concentration was the highest, of 0.007 mg/kg, in the control samples, while it is at the minimum level of 0.003 mg/kg in the samples treated with Formulations 4, 5, 6, and 7 (Figure S4).

The use of all EM formulations accelerated the degradation of benzo[a]pyrene, when compared to the control, and it ranged between 82.0 and 87.3%. Formulation 1, containing bacteria from Bifidobacterium, Bacillus, Lactococcus, Lactobacillus, Rhodopseudomonas, and Streptococcus genera, and yeasts S. cerevisiae, most strongly accelerated the decomposition of this substance (it accelerated the benzo[a]pyrene degradation by 9.8% versus the control) (Table 3).

Su et al. studied the influence of two microorganisms, Bacillus sp. SB02 and Mucor sp. SF06, on the benzo[a]pyrene degradation in the soil. Both SF06 and SB02 were isolated from the soil collected from the Shenfu Irrigation Area, China. The researchers studied and compared characteristics of the benzo[a]pyrene degradation, by free and by co-immobilized microorganisms. The level of the benzo[a]pyrene degradation was verified five times, on Days 7, 14, 21, 28, and 42. A higher degradation of that compound was achieved for microorganisms in the co-immobilized system. The highest degradation level was 79.6% for free microorganisms, and 95.3% for co-immobilized microorganisms [83].

Su et al. conducted similar studies on the benzo[a]pyrene degradation in the soil by the fungus, Mucor sp., free and immobilized. This microorganism was isolated from the soil contaminated with PAHs from the Shenfu Irrigation Area. The initial concentration of the studied PAH was 50 mg/kg. The degradation rate was higher for the immobilized fungi. The maximum degradation amounted to 68% for the immobilized fungi and 52% for free microorganisms on Day 42 of the experiment [84].

The influence of two bacteria, Bacillus flexus S1I26 and Paenibacillus sp. S1I8, isolated from the soil polluted with crude oil was studied. It was demonstrated that both isolates were able to secrete biosurfactant that increased benzo[a]pyrene solubility. On Day 21 of the experiment, B. flexus S1I26 degraded 70.7% of benzo[a]pyrene, while Paenibacillus sp. S1I8 achieved a higher degradation level, amounting to 76.8%. The results suggest that isolates producing biosurfactants can be a potential tool for PAHs biodegradation in the soil and they can be used to bioremediate sites polluted with those compounds [85].

The studies concerning the influence of fungi, Trichoderma sp., Fusarium sp., and A. niger, on the benzo[a]pyrene degradation were conducted. A hybrid carrier consisting of polyvinyl alcohol, sodium alginate, and activated carbon was used to immobilize the microorganisms. The initial concentration of benzo[a]pyrene was 100 mg/kg. After 240 h of incubation, the benzo[a]pyrene degradation amounted to 34% for Trichoderma sp., 29% for A. niger, and 37% for Fusarium sp. The degradation levels significantly exceeded those obtained for free fungi. Additionally, the synergistic effect of those microorganisms was verified, and for benzo[a]pyrene the highest degradation was obtained with A. niger and Fusarium sp., amounting to 43% [75].

Mandal et al. analyzed the benzo[a]pyrene degradation by a yeast consortium including Rhodotorula sp. NS01, H. opuntiae NS02, D. hansenii NS03, and H. valbyensis NS04, isolated from the contaminated soil. The maximum degradation amounted to 76% after 6 days in the aqueous medium under optimized conditions of pH 7.0, temperature of 30°C, shaking speed of 130 rpm, an inoculum dose of 3% (w/v), and the initial benzo[a]pyrene concentration of 50 mg/L [35].

3.1.9 Benzo[b]fluoranthene

On Day 4, the benzo[b]fluoranthene concentration was in the range from 0.013 to 0.039 mg/kg. On Day 14 of the study, the benzo[b]fluoranthene concentration was the highest in the control samples and amounted to 0.01 mg/kg, while it was the lowest in those with Formulation 5, amounting to 0.004 mg/kg. On the last day of the study, the studied substance was at the highest level, of 0.006 mg/kg, in the control samples, and at the minimum level of 0.003 mg/kg in the samples treated with Formulations 3, 4, 5, 6, and 7 (Figure S5).

The benzo[b]fluoranthene degradation was higher following treatment with EM formulations, excluding Formulation 6 (the yeast D. hansenii and its metabolites, bacteria from Bacillus genus), for which the degradation was similar to the control, at a level of 78.5%. The highest degradation, of 88.4%, was achieved for Formulation 1 (it accelerated the benzo[b]fluoranthene decomposition by 9.4% versus the control) (Table 3).

Kumari et al. demonstrated the ability of Ochrobactrum anthropi, S. maltophilia, P. mendocina, P. aeruginosa, and Microbacterium esteraromaticum to biodegrade several PAHs, including benzo[b]fluoranthene, during the bacteria exposure to crude oil. The benzo[b]fluoranthene concentration in the sample of oil collected from the Digboi refinery in India amounted to 6.5 mg/L. The experiments were conducted in laboratory conditions. The samples were tested on Days 15, 30, and 45. The degradation was the lowest, at the level of 34.8%, for P. mendocina, and the highest, of 61.2%, for P. aeruginosa. However, the consortium of the described bacteria achieved the enhanced benzo(b)fluoranthene degradation of 72.8% [86].

Treviño-Trejo et al. isolated and selected bacteria able to degrade benzo[b]fluoranthene. The isolates ability to tolerate concentrations of 50 and 75 mg/L of the studied PAH in the liquid medium was evaluated. The selected isolates were identified as belonging to Bacillus, Gordonia, Pseudomonas, Rhodococcus, Ochrobactrum, and Amycolatopsis genera. All isolates tolerated and grew at the benzo[b]fluoranthene concentrations tested. The most prominent was Amycolatopsis sp. Ver12, which removed 47% of benzo[b]fluoranthene; furthermore, with the addition of the yeast extract, it removed 59% of the studied compound [87].

3.1.10 Benzo[k]fluoranthene

On Day 4 of the study, the highest benzo[k]fluoranthene concentration amounted to 0.043 mg/kg, and the lowest amounted to 0.013 mg/kg. On Day 14 of the study, the concentration was the at the highest level, of 0.011 mg/kg, for the control samples and the samples treated with Formulation 1, and the lowest, of 0.004 mg/kg, following treatment with Formulation 5. On the last, 35th day of the study, the studied substance was at the highest level, of 0.008 mg/kg, in the control samples, and at the lowest level, of 0.003 mg/kg, in the samples treated with Formulations 4, 5, 6, and 7 (Figure S6).

The use of all EM formulations accelerated the benzo[k]fluoranthene decomposition. The degradation was the lowest for Formulation 6 (75.5%), and the highest for Formulation 1 (86.6%) (it accelerated the benzo[k]fluoranthene decomposition by 11.7% versus the control) (Table 3).

The results for benzo[b]fluoranthene and benzo[k]fluoranthene are very similar, due to the similar structure of these two PAHs.

Arulazhagan et al. studied the benzo(k)fluoranthene degradation by S. maltophilia strain AJH1, bacteria isolated from soil samples collected from different areas owned by the Saudi Arabian Mining Company. Strain AJH1 was able to degrade the benzo(k)fluoranthene at the concentration of 10 mg/L in the acidophilic MSM at the pH of 2. The maximum degradation level was 79% after 11 days [88].

Maeda et al. reported the studies on the benzo(k)fluoranthene degradation by the soil bacterial isolates Sphingobium sp. strain KK22. Benzo(k)fluoranthene concentration was reduced by 70% in 20 days of the experiment [89].

3.1.11 Dibenzo[a,h]anthracene

On Day 4 of the study, the highest dibenzo[a,h]anthracene concentration amounted to 0.041 mg/kg, and the lowest amounted to 0.014 mg/kg. On Day 14 of the experiment, the highest dibenzo[a,h]anthracene concentration, of 0.013 mg/kg, was found after treatment with Formulation 1. The lowest level, of 0.006 mg/kg, was noted in the samples treated with Formulations 5, 6, and 7. On Day 35 of the study, the substance was at its highest level, of 0.006 mg/kg, in the control samples, while it was at the lowest concentration, of 0.003 mg/kg, in the samples treated with Formulations 4, 5, 6, and 7 (Figure S9).

The use of EM formulations accelerated the dibenzo[a,h]anthracene degradation when compared to the control, except for Formulation 6 (77.5%). The highest degradation, of 87.9%, was achieved with Formulation 1 (Table 3).

The influence of eight fungal species A. praecox, Agrocybe dura, Kuehneromyces mutabilis, Hypholoma capnoides, S. rugosoannulata, Stropharia coronilla, S. cubensis, and S. hornemannii, on the dibenzo[a,h]anthracene degradation was studied by Steffen et al. The highest degradation of that compound, of 84%, was obtained for S. coronilla [90].

Dibenzo(a,h)anthracene biodegradation by indigenous strains of aerobic heterotrophic bacteria and cyanobacteria isolated from the Bodo creek, a moderately salty aquatic site polluted with crude oil, was monitored. Dibenzo(a,h)anthracene levels were reduced to 0 mg/L in all treatment options on Day 56 [91].

3.1.12 Benzo[ghi]perylene

Benzo[ghi]perylene was yet another studied substance. On Day 4, this substance was at the highest concentration of 0.052 mg/kg, and at the lowest level of 0.020 mg/kg. On Day 14 of the study, the benzo[ghi]perylene concentration was the highest in the control samples and amounted to 0.019 mg/kg, while it was the lowest in the samples spiked with Formulations 5 and 7, amounting to 0.011 mg/kg. On Day 35, the concentration was the highest, of 0.008 mg/kg, in the control samples, and the lowest, of 0.004 mg/kg, in the samples treated with Formulation 6 (Figure S7).

After treatment with Formulations 5 and 6, the benzo[ghi]perylene degradation was comparable to the control (ca. 79%), and for Formulation 7 the degradation was lower, of 76.6%. The highest degradation was obtained for Formulation 1, of 86.3% (Table 3).

Studies were conducted on the benzo[ghi]perylene biodegradation by B. licheniformis STK 01, B. subtilis STK 02, and P. aeruginosa STK 03, which were isolated from wood chips, coal tar, and an oil spill site. In the experiment, mono-septic cultures or co- and augmented cultures were used. The benzo[ghi]perylene concentration was 25 mg/kg of the soil. After 60 days of the experiment, 52.73, 40.50 and 58.42% of benzo[ghi]perylene were biodegraded by B. licheniformis, B. subtilis, and P. aeruginosa, respectively. The highest rate of the benzo[ghi]perylene degradation, of 60.76%, was reached with B. licheniformis and B. subtilis [72].

Mandal et al. studied the benzo[ghi]perylene degradation by the yeast consortium YC04, consisting of three isolates – Rhodotorula sp. NS01, D. hansenii NS03, and H. valbyensis NS04 in the MSM. The YC04 efficiency in benzo[ghi]perylene remediation was tested in a presence of ZnO nanoparticles and produced a biosurfactant in the growth medium. The maximum benzo[ghi]perylene biodegradation was found to be 63.83% at central values of all factors, a pH of 7.0, at a temperature of 30°C, and at a shaking speed of 130 rpm in the presence of 2 g/L of ZnO nanoparticles, using 3% inoculum doses of the yeast consortium YC04 after 6 days of incubation [34].

3.1.13 Indeno[1,2,3-cd] pyrene

On Day 4, the highest determined indeno[1,2,3-cd] pyrene level was 0.035 mg/kg, while the lowest concentration amounted to 0.015 mg/kg. On Day 14, the highest level of the studied substance was 0.031 mg/kg in the control samples, while the lowest concentration was found in the samples treated with Formulation 7 (0.014 mg/kg). On the last day of the experiment, the highest indeno[1,2,3-cd]pyrene level of 0.008 mg/kg was found in the control samples, while its level was the lowest (0.002 mg/kg) following application of Formulation 6 (Figure S11).

The use of EM formulations significantly accelerated the indeno[1,2,3-cd]pyrene degradation versus the control. The highest degradation, of 87%, was obtained for Formulation 5, while it was the lowest, of 83.3%, for Formulation 7 (it accelerated the indeno[1,2,3-cd]pyrene decomposition by 17% versus the control) (Table 3).

Two bacterial strains, Acinetobacter baumannii INP1 and Pseudomonas taiwanensis PYR1, were isolated from Liaohe, China, contaminated with PAHs. These microorganisms were able to degrade 55.3% of indeno[1,2,3-cd]pyrene after a period of 30 days. These strains’ ability to degrade pyrene was also studied, and it was found that they degraded 58.2% of pyrene [92].

Barnes et al. analyzed the degradation of indeno[1,2,3-cd]pyrene using ten fungal cultures, isolated from the aquatic environment – P. citrinum, A. sclerotigenum, A. polyporicola, A.versicolor, F. equiseti, Fusarium sp., Aspergillus sp., A. favus, and A. sydowii. All tested isolates degraded almost 100% of indeno[1,2,3-cd]pyrene [64].

3.2 Soil parameters: pH, the ORP, and DHA

On Day 1, the soil pH was 5.1, and on Day 4, after PAHs application, the pH of all soil samples was about 5.3. On Day 14, the pH of all studied samples increased, and this increase was the highest for the soil containing bacterial preparations. On Day 35, the pH decreased slightly or remained at the same level. On Days 14 and 35, in the samples with preparation 3 added, the soil pH value was the highest, of 5.9 and 5.6, respectively. The highest PAHs degradation was obtained for these samples. In acidic samples, the tested PAHs were more persistent (Figure S14). According to Pawar [46], the pollutants are frequently linked with the pH of contaminated sites, and microorganisms may not be able to transform PAHs under the acidic or alkaline conditions. Most heterotrophic bacteria and fungi favor a nearly neutral pH, with fungi being more tolerant of acidic conditions. Extremes in the pH, which can be observed in some soils, can negatively influence the ability of microbial populations to degrade PAHs.

On Day 14, following application of EM formulations, the ORP increased in all studied samples, when compared to the control samples, and was in a range from 295 (the sample containing Formulation 1) to 351 (the sample with Formulation 6). On Day 35 of the study, the ORP increased again and reached the highest value of 379 for the sample containing Formulation 7. On Day 35, ORP increased by almost 100, when compared to Day 1. On each day of testing, ORP for all samples with microorganisms was significantly higher versus the control samples (Figure S15). The ORP plays a crucial role in regulation of the microbial activity, and affects the soil enzymatic activity, which has an impact on the PAHs degradation [43].

The initial DHA value in the control samples was 26.5 µM TPF/g DM soil 20 h. The changes in the DHA are presented in Figure S16. The use of PAHs resulted in the DHA decrease in all samples on Day 14 versus Day 1. According to Karaca et al., Wolińska and Stępniewska, and Järvan et al. [3942], it is well known that pesticides, PAHs, and other persistent soil pollutants have inhibiting effects on the DHA. On Day 14, DHA in the samples with biological preparations was higher than in controls, except for Formulations 2 and 3. On Day 35, for Formulation 3 (which had the best PAHs bioremediation results), DHA increased from 12.8 µM TPF/g DM soil 20 h to 24.4 µM TPF/g DM soil 20 h after decomposition of these pollutants. The addition of the biological formulations significantly changes the enzymatic activity of the soil, and this was still visible on Day 35 [57].

4 Conclusions

Formulation 1, containing bacteria from Bacillus, Bifidobacterium, Lactococcus, Lactobacillus, Rhodopseudomonas, and Streptococcus genera, and yeasts S. cerevisiae was demonstrated to have the highest effectiveness in the biodegradation of the studied PAHs. When this formulation was used, eight PAHs: benzo[a]pyrene, benzo[k]fluoranthene, benzo[b]fluoranthene, benzo[ghi]perylene, chrysene, dibenzo[a,h]anthracene, phenanthrene, and pyrene were degraded with the highest intensity. The biological formulations containing bacteria proved to be more effective than yeast formulations. The presented studies show differences in the PAHs degradation by commercially available individual microorganisms and consortia of bacteria and yeasts. Commercial preparations are easily accessible and safe for the environment and humans; therefore they can be generally used. The proposed research would be advantageous for the development of bioremediation of soils contaminated with PAHs. The studies on applications of biological preparations should be continued, because other parameters such as the soil type or environmental conditions could also influence the PAHs degradation.

Acknowledgements

The authors would like to thank the Ministry of Education and Science for granting a subsidy for the maintenance of scientific-research equipment at the University of Rzeszow.

  1. Funding information: This research was funded by Priority research task of The Institute of Biotechnology, task No. 3, The use of biological systems in environmental protection.

  2. Author contribution: Conceptualization, E.S.; methodology, E.S.; formal analysis, E.S., P.K.-T.; writing – original draft preparation, P.K.-T.; writing – review and editing, E.S., P.K.-T.; preparation of extracts of soil samples using the QuEChERS method for the determination of PAHs residues using the GC-MS technique, P.K.-T., D.F; integration of results, E.S., D.F.; determination of enzymatic activity in soil samples, P.K.-T., D.W.

  3. Conflict of interest: Authors state no conflict of interest.

  4. Data availability statement: The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.

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Received: 2023-10-23
Revised: 2023-12-27
Accepted: 2024-01-02
Published Online: 2024-02-05

© 2024 the author(s), published by De Gruyter

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  69. Exploratory evaluation supported by experimental and modeling approaches of Inula viscosa root extract as a potent corrosion inhibitor for mild steel in a 1 M HCl solution
  70. Imaging manifestations of ductal adenoma of the breast: A case report
  71. Gut microbiota and sleep: Interaction mechanisms and therapeutic prospects
  72. Isomangiferin promotes the migration and osteogenic differentiation of rat bone marrow mesenchymal stem cells
  73. Prognostic value and microenvironmental crosstalk of exosome-related signatures in human epidermal growth factor receptor 2 positive breast cancer
  74. Circular RNAs as potential biomarkers for male severe sepsis
  75. Knockdown of Stanniocalcin-1 inhibits growth and glycolysis in oral squamous cell carcinoma cells
  76. The expression and biological role of complement C1s in esophageal squamous cell carcinoma
  77. A novel GNAS mutation in pseudohypoparathyroidism type 1a with articular flexion deformity: A case report
  78. Predictive value of serum magnesium levels for prognosis in patients with non-small cell lung cancer undergoing EGFR-TKI therapy
  79. HSPB1 alleviates acute-on-chronic liver failure via the P53/Bax pathway
  80. IgG4-related disease complicated by PLA2R-associated membranous nephropathy: A case report
  81. Baculovirus-mediated endostatin and angiostatin activation of autophagy through the AMPK/AKT/mTOR pathway inhibits angiogenesis in hepatocellular carcinoma
  82. Metformin mitigates osteoarthritis progression by modulating the PI3K/AKT/mTOR signaling pathway and enhancing chondrocyte autophagy
  83. Evaluation of the activity of antimicrobial peptides against bacterial vaginosis
  84. Atypical presentation of γ/δ mycosis fungoides with an unusual phenotype and SOCS1 mutation
  85. Analysis of the microecological mechanism of diabetic kidney disease based on the theory of “gut–kidney axis”: A systematic review
  86. Omega-3 fatty acids prevent gestational diabetes mellitus via modulation of lipid metabolism
  87. Refractory hypertension complicated with Turner syndrome: A case report
  88. Interaction of ncRNAs and the PI3K/AKT/mTOR pathway: Implications for osteosarcoma
  89. Association of low attenuation area scores with pulmonary function and clinical prognosis in patients with chronic obstructive pulmonary disease
  90. Long non-coding RNAs in bone formation: Key regulators and therapeutic prospects
  91. The deubiquitinating enzyme USP35 regulates the stability of NRF2 protein
  92. Neutrophil-to-lymphocyte ratio and platelet-to-lymphocyte ratio as potential diagnostic markers for rebleeding in patients with esophagogastric variceal bleeding
  93. G protein-coupled receptor 1 participating in the mechanism of mediating gestational diabetes mellitus by phosphorylating the AKT pathway
  94. LL37-mtDNA regulates viability, apoptosis, inflammation, and autophagy in lipopolysaccharide-treated RLE-6TN cells by targeting Hsp90aa1
  95. The analgesic effect of paeoniflorin: A focused review
  96. Chemical composition’s effect on Solanum nigrum Linn.’s antioxidant capacity and erythrocyte protection: Bioactive components and molecular docking analysis
  97. Knockdown of HCK promotes HREC cell viability and inner blood–retinal barrier integrity by regulating the AMPK signaling pathway
  98. The role of rapamycin in the PINK1/Parkin signaling pathway in mitophagy in podocytes
  99. Laryngeal non-Hodgkin lymphoma: Report of four cases and review of the literature
  100. Clinical value of macrogenome next-generation sequencing on infections
  101. Overview of dendritic cells and related pathways in autoimmune uveitis
  102. TAK-242 alleviates diabetic cardiomyopathy via inhibiting pyroptosis and TLR4/CaMKII/NLRP3 pathway
  103. Hypomethylation in promoters of PGC-1α involved in exercise-driven skeletal muscular alterations in old age
  104. Profile and antimicrobial susceptibility patterns of bacteria isolated from effluents of Kolladiba and Debark hospitals
  105. The expression and clinical significance of syncytin-1 in serum exosomes of hepatocellular carcinoma patients
  106. A histomorphometric study to evaluate the therapeutic effects of biosynthesized silver nanoparticles on the kidneys infected with Plasmodium chabaudi
  107. PGRMC1 and PAQR4 are promising molecular targets for a rare subtype of ovarian cancer
  108. Analysis of MDA, SOD, TAOC, MNCV, SNCV, and TSS scores in patients with diabetes peripheral neuropathy
  109. SLIT3 deficiency promotes non-small cell lung cancer progression by modulating UBE2C/WNT signaling
  110. The relationship between TMCO1 and CALR in the pathological characteristics of prostate cancer and its effect on the metastasis of prostate cancer cells
  111. Heterogeneous nuclear ribonucleoprotein K is a potential target for enhancing the chemosensitivity of nasopharyngeal carcinoma
  112. PHB2 alleviates retinal pigment epithelium cell fibrosis by suppressing the AGE–RAGE pathway
  113. Anti-γ-aminobutyric acid-B receptor autoimmune encephalitis with syncope as the initial symptom: Case report and literature review
  114. Comparative analysis of chloroplast genome of Lonicera japonica cv. Damaohua
  115. Human umbilical cord mesenchymal stem cells regulate glutathione metabolism depending on the ERK–Nrf2–HO-1 signal pathway to repair phosphoramide mustard-induced ovarian cancer cells
  116. Electroacupuncture on GB acupoints improves osteoporosis via the estradiol–PI3K–Akt signaling pathway
  117. Renalase protects against podocyte injury by inhibiting oxidative stress and apoptosis in diabetic nephropathy
  118. Review: Dicranostigma leptopodum: A peculiar plant of Papaveraceae
  119. Combination effect of flavonoids attenuates lung cancer cell proliferation by inhibiting the STAT3 and FAK signaling pathway
  120. Renal microangiopathy and immune complex glomerulonephritis induced by anti-tumour agents: A case report
  121. Correlation analysis of AVPR1a and AVPR2 with abnormal water and sodium and potassium metabolism in rats
  122. Gastrointestinal health anti-diarrheal mixture relieves spleen deficiency-induced diarrhea through regulating gut microbiota
  123. Myriad factors and pathways influencing tumor radiotherapy resistance
  124. Exploring the effects of culture conditions on Yapsin (YPS) gene expression in Nakaseomyces glabratus
  125. Screening of prognostic core genes based on cell–cell interaction in the peripheral blood of patients with sepsis
  126. Coagulation factor II thrombin receptor as a promising biomarker in breast cancer management
  127. Ileocecal mucinous carcinoma misdiagnosed as incarcerated hernia: A case report
  128. Methyltransferase like 13 promotes malignant behaviors of bladder cancer cells through targeting PI3K/ATK signaling pathway
  129. The debate between electricity and heat, efficacy and safety of irreversible electroporation and radiofrequency ablation in the treatment of liver cancer: A meta-analysis
  130. ZAG promotes colorectal cancer cell proliferation and epithelial–mesenchymal transition by promoting lipid synthesis
  131. Baicalein inhibits NLRP3 inflammasome activation and mitigates placental inflammation and oxidative stress in gestational diabetes mellitus
  132. Impact of SWCNT-conjugated senna leaf extract on breast cancer cells: A potential apoptotic therapeutic strategy
  133. MFAP5 inhibits the malignant progression of endometrial cancer cells in vitro
  134. Major ozonated autohemotherapy promoted functional recovery following spinal cord injury in adult rats via the inhibition of oxidative stress and inflammation
  135. Axodendritic targeting of TAU and MAP2 and microtubule polarization in iPSC-derived versus SH-SY5Y-derived human neurons
  136. Differential expression of phosphoinositide 3-kinase/protein kinase B and Toll-like receptor/nuclear factor kappa B signaling pathways in experimental obesity Wistar rat model
  137. The therapeutic potential of targeting Oncostatin M and the interleukin-6 family in retinal diseases: A comprehensive review
  138. BA inhibits LPS-stimulated inflammatory response and apoptosis in human middle ear epithelial cells by regulating the Nf-Kb/Iκbα axis
  139. Role of circRMRP and circRPL27 in chronic obstructive pulmonary disease
  140. Investigating the role of hyperexpressed HCN1 in inducing myocardial infarction through activation of the NF-κB signaling pathway
  141. Characterization of phenolic compounds and evaluation of anti-diabetic potential in Cannabis sativa L. seeds: In vivo, in vitro, and in silico studies
  142. Quantitative immunohistochemistry analysis of breast Ki67 based on artificial intelligence
  143. Ecology and Environmental Science
  144. Screening of different growth conditions of Bacillus subtilis isolated from membrane-less microbial fuel cell toward antimicrobial activity profiling
  145. Degradation of a mixture of 13 polycyclic aromatic hydrocarbons by commercial effective microorganisms
  146. Evaluation of the impact of two citrus plants on the variation of Panonychus citri (Acari: Tetranychidae) and beneficial phytoseiid mites
  147. Prediction of present and future distribution areas of Juniperus drupacea Labill and determination of ethnobotany properties in Antalya Province, Türkiye
  148. Population genetics of Todarodes pacificus (Cephalopoda: Ommastrephidae) in the northwest Pacific Ocean via GBS sequencing
  149. A comparative analysis of dendrometric, macromorphological, and micromorphological characteristics of Pistacia atlantica subsp. atlantica and Pistacia terebinthus in the middle Atlas region of Morocco
  150. Macrofungal sporocarp community in the lichen Scots pine forests
  151. Assessing the proximate compositions of indigenous forage species in Yemen’s pastoral rangelands
  152. Food Science
  153. Gut microbiota changes associated with low-carbohydrate diet intervention for obesity
  154. Reexamination of Aspergillus cristatus phylogeny in dark tea: Characteristics of the mitochondrial genome
  155. Differences in the flavonoid composition of the leaves, fruits, and branches of mulberry are distinguished based on a plant metabolomics approach
  156. Investigating the impact of wet rendering (solventless method) on PUFA-rich oil from catfish (Clarias magur) viscera
  157. Non-linear associations between cardiovascular metabolic indices and metabolic-associated fatty liver disease: A cross-sectional study in the US population (2017–2020)
  158. Knockdown of USP7 alleviates atherosclerosis in ApoE-deficient mice by regulating EZH2 expression
  159. Utility of dairy microbiome as a tool for authentication and traceability
  160. Agriculture
  161. Enhancing faba bean (Vicia faba L.) productivity through establishing the area-specific fertilizer rate recommendation in southwest Ethiopia
  162. Impact of novel herbicide based on synthetic auxins and ALS inhibitor on weed control
  163. Perspectives of pteridophytes microbiome for bioremediation in agricultural applications
  164. Fertilizer application parameters for drip-irrigated peanut based on the fertilizer effect function established from a “3414” field trial
  165. Improving the productivity and profitability of maize (Zea mays L.) using optimum blended inorganic fertilization
  166. Application of leaf multispectral analyzer in comparison to hyperspectral device to assess the diversity of spectral reflectance indices in wheat genotypes
  167. Animal Sciences
  168. Knockdown of ANP32E inhibits colorectal cancer cell growth and glycolysis by regulating the AKT/mTOR pathway
  169. Development of a detection chip for major pathogenic drug-resistant genes and drug targets in bovine respiratory system diseases
  170. Exploration of the genetic influence of MYOT and MB genes on the plumage coloration of Muscovy ducks
  171. Transcriptome analysis of adipose tissue in grazing cattle: Identifying key regulators of fat metabolism
  172. Comparison of nutritional value of the wild and cultivated spiny loaches at three growth stages
  173. Transcriptomic analysis of liver immune response in Chinese spiny frog (Quasipaa spinosa) infected with Proteus mirabilis
  174. Disruption of BCAA degradation is a critical characteristic of diabetic cardiomyopathy revealed by integrated transcriptome and metabolome analysis
  175. Plant Sciences
  176. Effect of long-term in-row branch covering on soil microorganisms in pear orchards
  177. Photosynthetic physiological characteristics, growth performance, and element concentrations reveal the calcicole–calcifuge behaviors of three Camellia species
  178. Transcriptome analysis reveals the mechanism of NaHCO3 promoting tobacco leaf maturation
  179. Bioinformatics, expression analysis, and functional verification of allene oxide synthase gene HvnAOS1 and HvnAOS2 in qingke
  180. Water, nitrogen, and phosphorus coupling improves gray jujube fruit quality and yield
  181. Improving grape fruit quality through soil conditioner: Insights from RNA-seq analysis of Cabernet Sauvignon roots
  182. Role of Embinin in the reabsorption of nucleus pulposus in lumbar disc herniation: Promotion of nucleus pulposus neovascularization and apoptosis of nucleus pulposus cells
  183. Revealing the effects of amino acid, organic acid, and phytohormones on the germination of tomato seeds under salinity stress
  184. Combined effects of nitrogen fertilizer and biochar on the growth, yield, and quality of pepper
  185. Comprehensive phytochemical and toxicological analysis of Chenopodium ambrosioides (L.) fractions
  186. Impact of “3414” fertilization on the yield and quality of greenhouse tomatoes
  187. Exploring the coupling mode of water and fertilizer for improving growth, fruit quality, and yield of the pear in the arid region
  188. Metagenomic analysis of endophytic bacteria in seed potato (Solanum tuberosum)
  189. Antibacterial, antifungal, and phytochemical properties of Salsola kali ethanolic extract
  190. Exploring the hepatoprotective properties of citronellol: In vitro and in silico studies on ethanol-induced damage in HepG2 cells
  191. Enhanced osmotic dehydration of watermelon rind using honey–sucrose solutions: A study on pre-treatment efficacy and mass transfer kinetics
  192. Effects of exogenous 2,4-epibrassinolide on photosynthetic traits of 53 cowpea varieties under NaCl stress
  193. Comparative transcriptome analysis of maize (Zea mays L.) seedlings in response to copper stress
  194. An optimization method for measuring the stomata in cassava (Manihot esculenta Crantz) under multiple abiotic stresses
  195. Fosinopril inhibits Ang II-induced VSMC proliferation, phenotype transformation, migration, and oxidative stress through the TGF-β1/Smad signaling pathway
  196. Antioxidant and antimicrobial activities of Salsola imbricata methanolic extract and its phytochemical characterization
  197. Bioengineering and Biotechnology
  198. Absorbable calcium and phosphorus bioactive membranes promote bone marrow mesenchymal stem cells osteogenic differentiation for bone regeneration
  199. New advances in protein engineering for industrial applications: Key takeaways
  200. An overview of the production and use of Bacillus thuringiensis toxin
  201. Research progress of nanoparticles in diagnosis and treatment of hepatocellular carcinoma
  202. Bioelectrochemical biosensors for water quality assessment and wastewater monitoring
  203. PEI/MMNs@LNA-542 nanoparticles alleviate ICU-acquired weakness through targeted autophagy inhibition and mitochondrial protection
  204. Unleashing of cytotoxic effects of thymoquinone-bovine serum albumin nanoparticles on A549 lung cancer cells
  205. Erratum
  206. Erratum to “Investigating the association between dietary patterns and glycemic control among children and adolescents with T1DM”
  207. Erratum to “Activation of hypermethylated P2RY1 mitigates gastric cancer by promoting apoptosis and inhibiting proliferation”
  208. Retraction
  209. Retraction to “MiR-223-3p regulates cell viability, migration, invasion, and apoptosis of non-small cell lung cancer cells by targeting RHOB”
  210. Retraction to “A data mining technique for detecting malignant mesothelioma cancer using multiple regression analysis”
  211. Special Issue on Advances in Neurodegenerative Disease Research and Treatment
  212. Transplantation of human neural stem cell prevents symptomatic motor behavior disability in a rat model of Parkinson’s disease
  213. Special Issue on Multi-omics
  214. Inflammasome complex genes with clinical relevance suggest potential as therapeutic targets for anti-tumor drugs in clear cell renal cell carcinoma
  215. Gastroesophageal varices in primary biliary cholangitis with anti-centromere antibody positivity: Early onset?
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