Abstract
C31H29N3O7, monoclinic, P21/c (no. 14), a = 13.6280(14) Å, b = 14.4801(15) Å, c = 14.4962(15) Å, β = 97.586(2)°, V = 2835.6(5) Å3, Z = 4 Rgt(F) = 0.0532, wRref(F2) = 0.1569, T = 296 K.
The molecular structure is shown in the Figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Data collection and handling.
| Crystal: | Colorless plate |
| Size: | 0.20 × 0.16 × 0.08 mm |
| Wavelength: | Mo Kα radiation (0.71073 Å) |
| μ: | 0.09 mm−1 |
| Diffractometer, scan mode: | φ and ω |
| θmax, completeness: | 25.0°, >99 % |
| N(hkl)measured, N(hkl)unique, Rint: | 14248, 4998, 0.038 |
| Criterion for Iobs, N(hkl)gt: | Iobs > 2 σ(Iobs), 3243 |
| N(param)refined: | 372 |
| Programs: | Bruker [1], SHELX [2], [3] |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).
| Atom | x | y | z | Uiso*/Ueq |
|---|---|---|---|---|
| O1 | 0.26715 (13) | 0.98351 (13) | 0.25689 (15) | 0.0582 (6) |
| H1A | 0.2635 | 1.0400 | 0.2579 | 0.087* |
| O2 | 0.58059 (13) | 1.05719 (12) | 0.16896 (13) | 0.0490 (5) |
| O3 | 0.82119 (14) | 1.16596 (14) | −0.01283 (15) | 0.0655 (6) |
| H3A | 0.8197 | 1.2118 | 0.0201 | 0.098* |
| O4 | 0.75502 (13) | 0.66803 (12) | 0.23700 (13) | 0.0519 (5) |
| O5 | 0.81359 (18) | 1.18234 (15) | 0.59881 (14) | 0.0718 (6) |
| O6 | 0.92263 (14) | 1.08467 (14) | 0.67519 (13) | 0.0580 (5) |
| O7 | 0.87706 (19) | 0.71644 (17) | 0.40776 (17) | 0.0868 (8) |
| H7 | 0.8352 | 0.7166 | 0.3616 | 0.130* |
| N1 | 0.69167 (15) | 0.81353 (14) | 0.20560 (14) | 0.0404 (5) |
| N2 | 0.74240 (15) | 0.84540 (15) | 0.28790 (14) | 0.0418 (5) |
| N3 | 0.84983 (15) | 0.90521 (15) | 0.45562 (15) | 0.0467 (6) |
| H3B | 0.8660 | 0.8501 | 0.4415 | 0.056* |
| C1 | 0.52975 (18) | 0.89678 (17) | 0.16787 (17) | 0.0392 (6) |
| C2 | 0.45502 (19) | 0.83537 (18) | 0.18452 (18) | 0.0444 (6) |
| H2B | 0.4639 | 0.7726 | 0.1749 | 0.053* |
| C3 | 0.3691 (2) | 0.86475 (18) | 0.21461 (19) | 0.0475 (7) |
| H3C | 0.3208 | 0.8222 | 0.2256 | 0.057* |
| C4 | 0.35419 (19) | 0.95820 (18) | 0.22859 (19) | 0.0450 (6) |
| C5 | 0.42640 (18) | 1.02091 (18) | 0.21295 (19) | 0.0448 (6) |
| H5A | 0.4173 | 1.0836 | 0.2227 | 0.054* |
| C6 | 0.51225 (18) | 0.98938 (17) | 0.18272 (17) | 0.0407 (6) |
| C7 | 0.65272 (18) | 1.03525 (18) | 0.11317 (18) | 0.0434 (6) |
| C8 | 0.70113 (19) | 1.11044 (19) | 0.08124 (19) | 0.0492 (7) |
| H8A | 0.6860 | 1.1701 | 0.0985 | 0.059* |
| C9 | 0.7723 (2) | 1.0952 (2) | 0.0233 (2) | 0.0508 (7) |
| C10 | 0.7938 (2) | 1.0065 (2) | −0.0013 (2) | 0.0566 (8) |
| H10A | 0.8407 | 0.9962 | −0.0413 | 0.068* |
| C11 | 0.7462 (2) | 0.9326 (2) | 0.03304 (19) | 0.0514 (7) |
| H11A | 0.7624 | 0.8730 | 0.0166 | 0.062* |
| C12 | 0.67460 (18) | 0.94551 (17) | 0.09177 (18) | 0.0417 (6) |
| C13 | 0.62352 (18) | 0.86478 (17) | 0.13207 (17) | 0.0403 (6) |
| C14 | 0.60028 (18) | 0.78607 (18) | 0.06299 (18) | 0.0422 (6) |
| C15 | 0.5398 (2) | 0.7887 (2) | −0.0207 (2) | 0.0591 (8) |
| H15A | 0.5114 | 0.8437 | −0.0442 | 0.071* |
| C16 | 0.5229 (2) | 0.7069 (3) | −0.0687 (2) | 0.0721 (10) |
| H16A | 0.4819 | 0.7071 | −0.1253 | 0.087* |
| C17 | 0.5647 (2) | 0.6248 (2) | −0.0353 (2) | 0.0671 (9) |
| H17A | 0.5510 | 0.5708 | −0.0693 | 0.081* |
| C18 | 0.6268 (2) | 0.6219 (2) | 0.0482 (2) | 0.0548 (7) |
| H18A | 0.6559 | 0.5670 | 0.0711 | 0.066* |
| C19 | 0.64380 (18) | 0.70427 (17) | 0.09634 (18) | 0.0424 (6) |
| C20 | 0.70351 (18) | 0.72266 (17) | 0.18602 (18) | 0.0410 (6) |
| C21 | 0.73122 (19) | 0.92826 (18) | 0.31429 (18) | 0.0431 (6) |
| H21A | 0.6889 | 0.9679 | 0.2775 | 0.052* |
| C22 | 0.78360 (18) | 0.96064 (18) | 0.40036 (18) | 0.0427 (6) |
| C23 | 0.77697 (19) | 1.04350 (18) | 0.44577 (18) | 0.0459 (7) |
| C24 | 0.84164 (19) | 1.03703 (18) | 0.53147 (18) | 0.0445 (6) |
| C25 | 0.88558 (19) | 0.94941 (19) | 0.53462 (18) | 0.0456 (7) |
| C26 | 0.7110 (3) | 1.1225 (2) | 0.4113 (2) | 0.0739 (10) |
| H26A | 0.7200 | 1.1722 | 0.4554 | 0.111* |
| H26B | 0.7277 | 1.1432 | 0.3524 | 0.111* |
| H26C | 0.6433 | 1.1026 | 0.4040 | 0.111* |
| C27 | 0.9577 (2) | 0.9025 (2) | 0.6054 (2) | 0.0626 (8) |
| H27A | 0.9756 | 0.9433 | 0.6570 | 0.094* |
| H27B | 0.9282 | 0.8476 | 0.6266 | 0.094* |
| H27C | 1.0158 | 0.8863 | 0.5781 | 0.094* |
| C28 | 0.8566 (2) | 1.1081 (2) | 0.60262 (19) | 0.0515 (7) |
| C29 | 0.9363 (3) | 1.1472 (2) | 0.7538 (2) | 0.0764 (10) |
| H29A | 0.8781 | 1.1467 | 0.7857 | 0.092* |
| H29B | 0.9463 | 1.2096 | 0.7326 | 0.092* |
| C30 | 1.0226 (3) | 1.1172 (3) | 0.8167 (3) | 0.1053 (14) |
| H30A | 1.0327 | 1.1580 | 0.8693 | 0.158* |
| H30B | 1.0120 | 1.0555 | 0.8377 | 0.158* |
| H30C | 1.0799 | 1.1182 | 0.7847 | 0.158* |
| C31 | 0.9549 (3) | 0.6582 (3) | 0.3924 (3) | 0.0990 (14) |
| H31A | 0.9934 | 0.6870 | 0.3495 | 0.149* |
| H31B | 0.9287 | 0.6008 | 0.3668 | 0.149* |
| H31C | 0.9961 | 0.6469 | 0.4503 | 0.149* |
Source of material
Fluorescein hydrazide was condensed with equimolar ethyl 2,4-dimethyl-5-formylpyrrole-3-carboxylate in boiling methanol and refluxed for 4 h, during which a white powder appeared, which was filtered off, washed with methanol/water (1:1, v/v) to produce the title compound. Yield: ca. 84%. Single crystals of the title compound were obtained by slow evaporation of a methanol solution at room temperature.
Experimental details
The structure was solved by direct methods and refined with the SHELX software package [3]. All hydrogen atoms were placed at calculated positions and refined as riding atoms with isotropic displacement parameters.
Comment
Fluorescein has been widely employed as fluorescent signal reporter of chemosensors because of its excellent photophysical properties [4]. In addition, some fluorescein hydrazones from substituted benzaldehyde have exhibited considerable biological activity as nonintercalative topoisomerase catalytic inhibitors [5]. In particular, fluorescein hydrazones with pyrrole- and pyridine-2-aldehyde have been reported as fluorescent probes for the turn-on detection of Cu2+ ions [6], [7]. Herein, we report the crystal structure of the title compound derived from fluorescein hydrazide and a substituted pyrrole-2-aldehyde, namely ethyl 2,4-dimethyl-5-formylpyrrole-3-carboxylate, which is also an intermediate of the anticancer drug of Sunitinib [8].
The asymmetric unit contains a neutral hydrazone molecule in a ring-closed form and a methanol molecule. The C20=O4 bond distance is 1.236(3) Å, indicating the keto form of the amide. The bond length of C21–N2 is 1.275(3) Å, suggesting the existence of the Schiff base C=N moiety. All bond lengths are in the expected ranges and comparable with those of reported fluorescein hydrazones [7], [9], [10], [11]. The dihedral angle between the least-square plane of the benzamide and pyrrole is 11.09°.
The crystal packing features numerous O–H⋯O and N–H⋯O hydrogen bonds, generating a two-dimensional network parallel to the bc plane, and incorporates the crystal methanol molecule.
Author contribution: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.
Research funding: None declared.
Conflict of interest statement: The authors declare no conflicts of interest regarding this article.
References
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© 2020 Ling Zhang et al., published by De Gruyter, Berlin/Boston
This work is licensed under the Creative Commons Attribution 4.0 International License.
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- Crystal structure of bis(amino(carbamothioylamino)methaniminium) 5-hydroxyisophthalate monohydrate, C12H20N8O6S2
- The crystal structure of 2-(chloromethyl)pyridine, C6H6ClN
- The crystal structure of 1-bromo-4-iodo-benzene, C6H4BrI
- The crystal structure of 2,6-dimethyl-4-nitro-phenol, C8H9NO3
- The crystal structure of 3-chloropropionic acid, C3H5ClO2
- The crystal structure of 2-(2-methoxyphenyl)acetic acid, C9H10O3
Articles in the same Issue
- Frontmatter
- New Crystal Structures
- The crystal structure of 3-oxo-urs-12-en-28-oic acid, C30H46O3·1/6H2O
- The crystal structure of (3S,12R,20R,24R)-3,12-diacetyl-20,24-epoxy-dammarane-3,12,25–triol–ethyl acetate (4/1), C34H56O6⋅ 0.25(C4H8O2)
- A new polymorph of tetrakis(dimethylammonium) catena-poly[tetrakis(μ2-sulfato-κ2O:O′)dizinc(II)], Zn2C8H32N4O16S4
- Crystal structure of 10-oxysophoridine, C15H22N2O2
- The crystal structure of (5R,8R,9R,10R,12R,13R,14R)-12-hydroxy-4,4,8,10,14-pentamethyl-17-((R)-2,6,6-trimethyltetrahydro-2H-pyran-2-yl)tetradecahydro-3H-cyclopenta[a]phenanthrene-3,6(2H)-dione, C30H48O4
- Synthesis, crystal structure and optical property of 1,6-bis(p-tolylthio)pyrene, C30H22S2
- The crystal structure of hexakis(2-(pyridin-2-ylamino)pyridin-1-ium) decavanadate(V) dihydrate, C60H64N18O30V10
- Preparation and crystal structure of a cationic olefin polymerization precatalyst: (1,7-bis(2,6–dichlorophenyl)-1,7-di-aza-4-oxo-heptan-1,4,7-triyl)dimethyl zirconium(IV), C18H20Cl4N2OZr
- The crystal structure of fac-tricarbonyl(4,4-dimethyl-2,2-dipyridyl-κ2N,N′)- (pyrazole-κN)rhenium(I) nitrate, C18H16O3N4Re
- Synthesis and crystal structure of hexaaquacopper(II) 2,5-dicarboxyterephthalate, C10H16O14Cu
- The crystal structure of (8R,10R,12R,14R)- 12-hydroxy-16-(5-(2-hydroxypropan-2-yl)-2-methyltetrahydrofuran-2-yl)- 4,4,8,10,14-pentamethyltetradecahydro-3H- cyclopenta[a]phenanthrene-3,6(2H)-dione, C30H48O5
- Structure of the mixed crystal (S)-(6-(bromo/chloro)-2-methoxy-2,6-dihydroquinolin-3-yl)(phenyl)methanol, C17H14Br0.5Cl0.5NO2
- The crystal structure of trans-tetraaqua-bis(4-acetylphenoxyacetato-κ1O)manganese(II), C20H26O12Mn
- Crystal structure of (E)-2-(4-fluoro-3-(trifluoromethyl)benzylidene)-7-methoxy-3,4-dihydronaphthalen-1(2H)-one, C19H14F4O2
- Crystal structure of DL-α-(methylaminomethyl)benzyl alcohol, C9H13NO
- The crystal structure of dipentaerthritol hexanitrate, C10H16N6O19
- Crystal structure of N,N-diphenylformamide, C13H11NO
- Crystal structure of (E)-2-(3,5-bis(trifluoromethyl)benzylidene)-7-methoxy-3,4-dihydronaphthalen- 1(2H)-one, C20H14F6O2
- Crystal structure of ortho-methoxy benzaldehyde, C8H8O2 – a second polymorph and deposition of 3D coordinates
- Crystal structure of catena-poly[diaqua-bis(μ2-2-(4-(2,4,4-trimethylpentan-2-yl)phenoxy)propanoato-κ2O:O')-(2-(4-(2,4,4-trimethylpentan-2-yl)phenoxy)propanoato-κ2O,O')yttrium(III)], C51H79O11Y
- Crystal structure of benzylthiouronium chloride, C8H11ClN2S
- Synthesis and crystal structure of tert-butyl (2′R,3R,3′R,4a′R,9a′S)-1-acetyl-5-chloro-3″-methyl-2,5″,9′-trioxo-1″-phenyl-1″,4a′,5″,9a′-tetrahydro-1′H,3′H,9′H-dispiro[indoline-3,4′-xanthene-2′,4″-pyrazole]-3′-carboxylate, C36H32ClN3O7
- Crystal structure of 2-hydroxy-4-methoxy benzaldehyde, C8H8O3
- Crystal structure of poly[diaqua-(m3-3′,5′-dicarboxy-[1,1′-biphenyl]-3,4-dicarboxylato-K4O,O′:O″:O‴) cadmium(II)], C16H11O10Cd
- Crystal structure of {tetraaqua-bis(1-(4-hydroxy-2-oxotetrahydrofuran-3-yl)-2-((4aS,6R,8aS)-6-hydroxy-5-(hydroxymethyl)-5,8a-dimethyl-2-methylenedecahydronaphthalen-1-yl)ethane-1-sulfonato-k2O,O') calcium(II)}-{triaqua-bis(1-(4-hydroxy-2-oxotetrahydrofuran-3-yl)-2-((4aS,6R,8aS)-6-hydroxy-5-(hydroxymethyl)-5,8a-dimethyl-2-methylenedecahydronaphthalen-1-yl)ethane-1-sulfonato-k2O,O') calcium(II)} – water – acetone (1/1/8/2)
- Synthesis and crystal structure of bis{2-bromo-6-((E)-((4-((E)-1-(methoxy-imino)ethyl)phenyl)imino)methyl)phenolato- κ2N,O}zinc(II)-methanol(1/2), C65H60Br4N8O9Zn2
- Crystal structure of benzenesulphonic acid
- Crystal structure of N-benzyl-N-nicotinoyl-nicotine amide C19H15N3O2
- Crystal structure of poly[aqua(μ3-2,4-diamino-benzenesulfonato-κ4N:N′,O:O′)silver(I)], C12H18O8N4S2Ag2
- Crystal structure of 1,4-bis(methylpyridinium benzene) bis(1,2-dicyanoethene-1,2-dithiolato-κ2S:S)nickel(II), C26H18N6NiS4
- Crystal structure of the Cu(II) complex chlorido-(6-oxo-2-phenyl-1,6-dihydropyrimidine-4-carboxylato-k2N,O)-(phenanthroline-k2N,N')copper(II), C23H15ClCuN4O3
- Crystal structure of phenarsazine chloride acetic acid solvate, C14H13AsClNO2
- Crystal structure of poly[aqua-(μ2-3,3′,4,5′-biphenyl tetracarboxylate- κ3O,O′:O′′) -(μ2-4,4′-bis(pyrid-4-yl)biphenyl-κ2N:N′)zinc(II)], C27H18NO9Zn
- Crystal structure of catena-poly[(μ2-3-amino-benzenedisulfonato-κ2N:O)-bis (3-methyl-isoquinoline-κN)silver(I)], C26H24N3O3SAg
- Crystal structure of 2-((4-Aminophenyl)thio)acetic acid, C8H9NO2S
- Crystal structure of phenarsazine chloride dimethylsulfoxide solvate, C14H15AsClNOS
- Synthesis and crystal structure of 2-azido-N-phenylacetamide, C8H8N4O
- Crystal structure of chlorido{hydridotris[3-phenyl-5-methylpyrazol-1-yl-κN3]borato}copper(II), C30H28BClCuN6
- Crystal structure of benzanthrone – a redetermination for correct molecular geometry and localization of hydrogen atoms
- Crystal structure of 4-bromobenzaldehyde – complete redetermination at 200 K, C7H5BrO
- Crystal structure and spectroscopic properties of chlorido{hydridotris[3-,5-dimethylpyrazol-1-yl-κN3]borato}(3-,5-dimethylpyrazol-1-yl-κN)copper(II), C20H30BClCuN8
- The crystal structure of 4-((2-hydroxynaphthalen-1-yl)(pyrrolidin-1-yl)methyl)benzonitrile, C22H20N2O
- Crystal structure of 4-ethyl-3-phenylisoquinolin-1(2H)-one, C17H15NO
- Crystal structure of (tricyclohexylphosphane-κP)-[(Z)-N-(3-fluorophenyl)-O-methylthiocarbamato-k1S]gold(I), C26H40AuFNOPS
- Crystal structure of (3S,8R,10R,12R,14R)-12-hydroxy-4,4,8,10,14-pentamethyl-17-((R)-2,6,6-trimethyltetrahydro-2H-pyran-2-yl) hexadecahydro-1H-cyclopenta[a]phenanthren-3-yl acetate, C32H54O4
- The crystal structure of 2-[(S)-1-(naphthalen-1-yl)ethyl]-2,3,7,7a- tetrahydro-3a,6-epoxyisoindol-1(6H)-one, C19H20NO2
- Crystal structure of {hydridotris[3-(t-butyl)-5-isopropylpyrazol-1-yl-κN3]borato}thallium(I), C30H52BN6Tl
- Synthesis and crystal structure of 1-octyl-3-phenylquinoxalin-2(1H)-one, C22H26N2O
- The crystal structure of 2,6-difluorophenol, C6H4F2O
- 4-(9H-Fluoren-9-yl)-4-methylmorpholin-4-ium bromide, C18H20BrNO
- The crystal structure of 2,4-dimethylimidazole monohydrate, C5H10N2O
- The crystal structure of 1,2-dimethylimidazole, C5H8N2
- The crystal structure of 3-ammonio-4-aminobenzoate, C7H8N2O2 – a second polymorph
- The crystal structure of 4-hydroxy-2,5-bis(1-methyl-1H-imidazol-3-ium-2-ylthio)-3,6-dioxocyclohexa-1,4-dienolate chloride monohydrate, C14H15N4O5S2Cl
- The crystal structure of butyrylferrocene, C14H16FeO
- The crystal structure of bi-1,1′-cyclopentane-1,1′-diol, C10H18O2
- The crystal structure of 2-iso-propylimidazole, C6H10N2
- The crystal structure of aqua-tris (1,3-diphenylpropane-1,3-dionato-κ2O,O′)-lanthanum(III), C45H35LaO7
- Crystal structure of (3E,5E)-3,5-bis-4-methoxy-3-(trifluoromethyl)benzylidene)-1-methylpiperidin-4-one, C24H21F6NO3
- The crystal structure of 3,5-dichloro-6-diazo-2,4-dinitrocyclohexa-2,4-dien-1-one, C6Cl2N4O5
- Crystal structure of carbonyl(2-methylquinolin-8-olato-κ2N,O)(triphenylarsine-κAs)rhodium(I), C29H23AsNO2Rh
- Crystal structure of (1aS,1a1S,2S)-4a-butoxy-1a,1a1,2,4a,5,6-hexahydro-1H-cyclobuta[de]naphthalen-2-yl-4-nitrobenzoate, C22H25NO5
- Crystal structure of carbonyl(2-oxopyridin-1(2H)-olato-k2O,O′)(triphenylarsine-κAs)rhodium(I), C24H19AsNO3Rh
- Crystal structure of catena-poly[triqua-bis(μ2-4-carboxy-2-(1H-tetrazol-1-yl)-1H-imidazole-5-carboxylato-k3N,O:O′)barium(II)] tetrahydrate, C14H14BaN12O15
- Crystal structure of (E)-3′,6′-bis(ethylamino)-2-((quinoxalin-2-ylmethylene)amino)spiro[isoindoline-1,9′-xanthen]-3-one, C35H32N6O2
- Crystal structure of diaqua-bis(μ2-5-chloro-salicylato-κ3O,O′:O′)-bis(5-chloro-salicylato-κ2O,O′)-bis(1,10-phenanthroline-κ2N,N′) dilead(II) – water (1/2), C52H36C14N4O14Pb2·2(H2O)
- Crystal structure of (E)-2-(4-ethoxycarbonyl-3,5-dimethyl-2-(pyrrole-2-ylmethyleneamino)-3′,6′-dihydroxylspiro[isoindoline-1,9′-xanthen]-3-one-methanol (1/1), C31H29N3O7
- The crystal structure of 5H-dibenzo[b,e]azepine-6,11-dione, C14H9NO2
- Crystal structure of (E)-2-(4-fluoro-2-(trifluoromethyl)benzylidene)-7-methoxy-3,4-dihydronaphthalen-1(2H)-one, C19H14F4O2
- The crystal structure of N-(2-methoxy-4,5-bis[phenylselanyl]phenyl)picolinamide, C25H20N2O2Se2
- The crystal structure of (E)-2-(5-bromo-2-hydroxybenzylidene)-N-phenylhydrazine-1- carboxamide monohydrate, C14H14BrN3O3
- Crystal structure of fac-tricarbonyl-(nitrato-k1O)-bis(pyridine-κN)-rhenium, C13H10O6N3Re
- Crystal structure of (E)-2-(((1H-pyrrol-2-yl)methylene)amino)-3′,6′-dihydroxyspiro[isoindoline-1,9′-xanthen]-3-one — methanol (1/2), C27H25N3O6
- The crystal structure of 4-amino-N′-(4-aminobenzoyl)benzohydrazide monohydrate, C14H16N4O3
- Crystal structure of bis(amino(carbamothioylamino)methaniminium) 5-hydroxyisophthalate monohydrate, C12H20N8O6S2
- The crystal structure of 2-(chloromethyl)pyridine, C6H6ClN
- The crystal structure of 1-bromo-4-iodo-benzene, C6H4BrI
- The crystal structure of 2,6-dimethyl-4-nitro-phenol, C8H9NO3
- The crystal structure of 3-chloropropionic acid, C3H5ClO2
- The crystal structure of 2-(2-methoxyphenyl)acetic acid, C9H10O3