Home Crystal structure of (E)-2-(((1H-pyrrol-2-yl)methylene)amino)-3′,6′-dihydroxyspiro[isoindoline-1,9′-xanthen]-3-one — methanol (1/2), C27H25N3O6
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Crystal structure of (E)-2-(((1H-pyrrol-2-yl)methylene)amino)-3′,6′-dihydroxyspiro[isoindoline-1,9′-xanthen]-3-one — methanol (1/2), C27H25N3O6

  • Yu-Fei Song , Wei-Na Wu ORCID logo and Yuan Wang
Published/Copyright: December 14, 2020

Abstract

C27H25N3O6, triclinic, P1 (no. 2), a = 10.591(5) Å, b = 10.833(5) Å, c = 12.503(6) Å, α = 73.690(7)°, β = 88.569(7)°, γ = 60.856(6)°, V = 1191.7(9) Å3, Z = 2, Rgt(F) = 0.0542, wRref(F2) = 0.1716, T = 296 K.

CDC no.: 2036799

The molecular structure is shown in the Figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless plate
Size:0.20 × 0.18 × 0.09 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.10 mm−1
Diffractometer, scan mode:SMART, φ and ω
θmax, completeness:25.0°, 99%
N(hkl)measured, N(hkl)unique, Rint:6130, 4171, 0.024
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2649
N(param)refined:329
Programs:Bruker [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
N10.2352 (2)0.7526 (2)0.24122 (18)0.0433 (5)
N20.1393 (2)0.8707 (2)0.27708 (18)0.0469 (5)
N3−0.0413 (3)1.1050 (3)0.3582 (2)0.0648 (7)
H3B0.03861.10460.34350.078*
C10.1018 (3)0.6662 (3)0.1486 (2)0.0428 (6)
C20.0641 (3)0.7755 (3)0.0458 (2)0.0493 (7)
H2B0.11020.83180.03170.059*
C3−0.0397 (3)0.8037 (3)−0.0365 (2)0.0530 (7)
H3C−0.06370.8784−0.10440.064*
C4−0.1072 (3)0.7191 (3)−0.0163 (2)0.0511 (7)
C5−0.0737 (3)0.6119 (3)0.0842 (2)0.0524 (7)
H5A−0.12000.55590.09790.063*
C60.0294 (3)0.5864 (3)0.1662 (2)0.0457 (6)
C70.1365 (3)0.4609 (3)0.3544 (2)0.0499 (7)
C80.1322 (3)0.3697 (3)0.4558 (2)0.0579 (7)
H8A0.07650.32420.45840.070*
C90.2099 (3)0.3469 (3)0.5515 (2)0.0559 (7)
C100.2925 (3)0.4125 (3)0.5484 (2)0.0602 (8)
H10A0.34610.39580.61390.072*
C110.2962 (3)0.5053 (3)0.4460 (2)0.0587 (8)
H11A0.35210.55040.44420.070*
C120.2177 (3)0.5309 (3)0.3469 (2)0.0459 (6)
C130.2261 (3)0.6229 (3)0.2336 (2)0.0432 (6)
C140.3729 (3)0.5393 (3)0.1932 (2)0.0436 (6)
C150.4315 (3)0.4086 (3)0.1677 (2)0.0567 (7)
H15A0.38040.35800.17300.068*
C160.5680 (3)0.3545 (3)0.1342 (3)0.0645 (8)
H16A0.61010.26500.11800.077*
C170.6435 (3)0.4297 (4)0.1240 (3)0.0657 (8)
H17A0.73560.39030.10100.079*
C180.5855 (3)0.5609 (3)0.1470 (3)0.0610 (8)
H18A0.63570.61280.13960.073*
C190.4482 (3)0.6144 (3)0.1819 (2)0.0484 (7)
C200.3604 (3)0.7496 (3)0.2130 (2)0.0495 (7)
C210.0180 (3)0.8831 (3)0.3047 (2)0.0505 (7)
H21A−0.00800.81440.29910.061*
C22−0.0781 (3)1.0050 (3)0.3448 (2)0.0530 (7)
C23−0.2134 (3)1.0451 (3)0.3765 (3)0.0625 (8)
H23A−0.26590.99710.37560.075*
C24−0.2588 (4)1.1708 (4)0.4107 (3)0.0761 (10)
H24A−0.34661.22160.43700.091*
C25−0.1517 (4)1.2047 (4)0.3984 (3)0.0762 (10)
H25A−0.15331.28400.41480.091*
C26−0.3757 (3)0.9447 (4)−0.3621 (3)0.0760 (10)
H26A−0.45340.9693−0.31650.114*
H26B−0.35360.8551−0.37800.114*
H26C−0.40511.0243−0.43130.114*
C270.3735 (4)0.0135 (4)0.8949 (3)0.0895 (11)
H27A0.4586−0.06740.88070.134*
H27B0.28780.01490.86980.134*
H27C0.37840.00110.97400.134*
O1−0.2097 (2)0.7385 (2)−0.09261 (18)0.0726 (6)
H1A−0.21330.7957−0.15310.109*
O20.0553 (2)0.4755 (2)0.26398 (16)0.0611 (5)
O30.1978 (3)0.2585 (2)0.64841 (18)0.0796 (7)
H3A0.26140.23540.69810.119*
O40.3912 (2)0.8450 (2)0.21574 (19)0.0682 (6)
O5−0.2502 (2)0.9234 (2)−0.30375 (19)0.0702 (6)
H5−0.27060.9979−0.28630.105*
O60.3673 (2)0.1479 (3)0.8367 (2)0.0846 (7)
H60.45010.13550.83700.127*

Source of material

The title compound was synthesized according to the literature method [4]. Single crystals suitable for X-ray diffraction were obtained by slow evaporation of its methanol solution at room temperature.

Experimental details

The structure was solved by direct methods and refined with the SHELX crystallographic software package [3]. All hydrogen atoms were placed at calculated positions and refined as riding atoms with isotropic displacement parameters.

Comment

Fluorescein hydrazones have been paid much attention primarily due to their considerable biological activities [5] and excellent metal ions sensoring applications [4], [6], [7], [8]. Particularly, fluorescein hydrazone derived pyrrole-2-aldehyde is able to act as a fluorescent probe for turn-on detection of Cu2+ ion [4]. Herein, we report the crystal structure of its methanol disolvate.

The asymmetric unit contains a neutral hydrazone molecule in a ring-closed form and two methanol molecules. The C20 = O4 bond distance is 1.235(3) Å, indicating the keto form of the amide. The bond length of C21–N2 is 1.274(3) Å, suggesting the existence of the Schiff base C=N moiety. All bond lengths are in the expected ranges and comparable with those of reported fluorescein hydrazones [6], [7], [8] and a directly related spiro compound [9]. The dihedral angle between the least-square plane of the benzamide and pyrrole is 6.18°. In the solid state, hydrazone molecules are linked into a chain structure by methanol molecules via O–H⋯O and N–H⋯O hydrogen bonds.


Corresponding author: Yuan Wang, College of Chemistry and Chemical Engineering, Henan Polytechnic University, Jiaozuo454000, P. R. China, E-mail:

  1. Author contribution: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: None declared.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2020-09-17
Accepted: 2020-10-13
Published Online: 2020-12-14
Published in Print: 2021-01-26

© 2020 Yu-Fei Song et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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