Startseite The crystal structure of 3-amino-5-carboxypyridin-1-ium bromide, C6H7BrN2O2
Artikel Open Access

The crystal structure of 3-amino-5-carboxypyridin-1-ium bromide, C6H7BrN2O2

  • Chao-Jun Du ORCID logo EMAIL logo , De-Long Niu , Zhen-Li Yan , Shi-Li Zheng und Yan Zeng
Veröffentlicht/Copyright: 18. Oktober 2021

Abstract

C6H7BrN2O2, triclinic, P 1 (no. 2), a = 7.3026(4) Å, b = 7.4618(4) Å, c = 7.8746(4) Å, α = 81.542(3)°, β = 89.459(3)°, γ = 61.718(3)°, V = 372.86(4) Å3, Z = 2, R gt (F) = 0.0209, wR ref (F 2) = 0.0473, T = 150(2) K.

CCDC no.: 2113910

The asymmetric unit of the title salt structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless needle
Size: 0.20 × 0.15 × 0.10 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 5.46 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θ max, completeness: 26.4°, >99%
N(hkl)measured, N(hkl)unique, R int: 7980, 1537, 0.042
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 1398
N(param)refined: 108
Programs: Bruker [1], Olex2 [2], SHELX [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
Br1 0.73011 (4) 0.11619 (3) 0.12488 (3) 0.02096 (8)
C1 0.7768 (3) 0.8168 (3) 0.7494 (3) 0.0161 (4)
C2 0.7724 (3) 0.6531 (3) 0.6628 (3) 0.0137 (4)
C3 0.8191 (3) 0.4625 (3) 0.7575 (3) 0.0168 (4)
H3 0.853904 0.432947 0.877970 0.020*
C4 0.7662 (3) 0.3524 (3) 0.5041 (3) 0.0174 (5)
H4 0.766441 0.245151 0.452135 0.021*
C5 0.7164 (3) 0.5424 (3) 0.4037 (3) 0.0149 (4)
C6 0.7223 (3) 0.6935 (3) 0.4880 (3) 0.0146 (4)
H6 0.691664 0.823974 0.424192 0.018*
H1 0.839 (5) 0.204 (5) 0.732 (4) 0.041 (9)*
H2 0.810 (5) 0.854 (5) 0.961 (4) 0.043 (9)*
N1 0.8135 (3) 0.3216 (3) 0.6730 (2) 0.0190 (4)
N2 0.6669 (3) 0.5749 (3) 0.2329 (2) 0.0238 (4)
H2A 0.665895 0.476291 0.184485 0.029*
H2B 0.635612 0.694739 0.170076 0.029*
O1 0.7418 (3) 0.9827 (2) 0.6701 (2) 0.0240 (4)
O2 0.8235 (3) 0.7595 (3) 0.9161 (2) 0.0206 (4)

Source of material

All starting materials were purchased and used as received. Under stirring, 1.38 g of 5-aminopyridine-3-carboxylic acid (10 mmol) was mixed with 10 mL 6 M hydrobromic acid to form a solution. After 15 min, the solution was filtered. Colorless crystals were deposited after about 50 h, yield 65% (based on 5-aminopyridine-3-carboxylic acid).

Experimental details

The structure was solved by direct methods with the SHELXS-2018 program. All H-atoms were positioned with idealized geometry and refined isotropic (U iso (H) = 1.2U eq (C)) and (N) using a riding model with C–H = 0.95 Å and N–H = 0.88 Å of amino group (If the two H atoms of amino group were refined freely, the acceptor of H2A was not found). The H-atoms from O atom and N of pyridine ring were positioned with Q peaks and refined freely with the distance of O2–H2 = 0.795 and N1–H1 = 0.867 Å, respectively.

Comment

Well known as an excellent organic linker, 5-aminopyridine-3-carboxylic acid, that has three different potential coordination groups at the same time, has been exploited to construct metal complexes [5], [6], [7], [8], [9], [10], [11], [12], [13]. Recently, the crystal structure of the corresponding perchlorate salt has been reported [14]. But the crystal structure of its hydrobromide has not been published.

There are two parts in the asymmetric unit: one is the 3-amino-5-carboxypyridin-1-ium cation, and the other is the bromide anion. The nitrogen atom of the pyridine ring is protonated (see the Figure). The distances of C1–O2 and C1–O1 are 1.209 and 1.314 Å, respectively, indicating that the latter is single-bonded. The 3-amino-5-carboxypyridin-1-ium cations are linked by hydrogen bonds N1–H1⃛O1′ and N2–H2B⃛O2″ to form one-dimensional chains, which further are bridged by N2–H2A⃛Br1 and O2–H2⃛Br1′′′ to generate a two-dimensional supramolecular structure. All of the C–C, C–N and C–O bond lengths are similar to the reported 3-amino-5-carboxypyridin-1-ium perchlorate monohydrate [14].


Corresponding author: Chao-Jun Du, Nanyang Research Institute of Zhengzhou University, Nanyang Institute of Technology, Nanyang, Henan 473000, P. R. China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: None declared.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

1. Bruker. SAINT (v8.37A); Bruker AXS Inc: Madison, Wisconsin, USA, 2015.Suche in Google Scholar

2. Bourhis, L. J., Dolomanov, O. V., Gildea, R. J., Howard, J. A. K., Puschmann, H. The anatomy of a comprehensive constrained, restrained refinement program for the modern computing environment-Olex2 dissected. Acta Crystallogr. 2015, A71, 59–75; https://doi.org/10.1107/s2053273314022207.Suche in Google Scholar

3. Sheldrick, G. M. Crystal structure refinement with SHELXL. Acta Crystallogr. 2015, C71, 3–8; https://doi.org/10.1107/s2053229614024218.Suche in Google Scholar PubMed PubMed Central

4. Sheldrick, G. Using phases to determine the space group. Acta Crystallogr. 2018, A74, a353; https://doi.org/10.1107/s0108767318096472.Suche in Google Scholar

5. Pei, Y., Ge, Z.-W., Liu, P.-W., Chen, J. Structural diversity and solid-state properties of CoII and ZnII coordination complexes with 5-aminonicotinate through metal direction. J. Coord. Chem. 2013, 66, 3305–3313.10.1080/00958972.2013.834334Suche in Google Scholar

6. Zhang, C.-L., Qin, L., Zheng, H.-G. Synthesis, crystal structure and optical properties of zinc coordination polymer from 5-aminonicotinic acid ligand. Chin. J. Inorg. Chem. 2014, 30, 800–804.Suche in Google Scholar

7. Jiang, Y.-H., Wu, W.-P., Yang, G.-P., Jin, J.-C., Xi, Z.-P., Wang, Y.-Y. Syntheses and structures of three transition metal coordination polymers based on 5-aminonicotinic acid. J. Mol. Struct. 2015, 1091, 25–30; https://doi.org/10.1016/j.molstruc.2015.02.054.Suche in Google Scholar

8. Zhou, Y.-Y., Geng, B., Zhang, Z.-W., Bo, Q.-B. Synthesis, structures and photoluminescence of three d10 5-aminonicotinate and 5-aminoisophthalate coordination polymers with bilayer structures. Inorg. Chim. Acta 2016, 444, 150–158; https://doi.org/10.1016/j.ica.2016.02.001.Suche in Google Scholar

9. Jiang, T., Lin, C.-C., Liu, X.-J., He, S., Shi, H.-L., Mai, Y.-X. Synthesis, crystal structure and iodine capture of a yttrium(III) coordination polymer with 5-aminonicotinic acid. Chin. J. Struct. Chem. 2017, 36, 1601–1608.Suche in Google Scholar

10. Wang, C., Liu, C., Tian, H.-R., Li, L.-J., Sun, Z.-M. Designed cluster assembly of multidimensional titanium coordination polymers: syntheses, crystal structure and properties. Chem. Eur J. 2018, 24, 2952–2961; https://doi.org/10.1002/chem.201705013.Suche in Google Scholar PubMed

11. Hou, S.-L., Dong, J., Jiang, X.-L., Jiao, Z.-H., Zhao, B. A noble-metal-free metal-organic framework (MOF) catalyst for the highly efficient conversion of CO2 with propargylic alcohols. Angew. Chem. Int. Ed. 2019, 58, 577–581; https://doi.org/10.1002/anie.201811506.Suche in Google Scholar PubMed

12. Lin, M. A bi-functional 3D PbII-organic framework for Knoevenagel condensation reaction and highly selective luminescent sensing of Cr2O. Inorg. Chem. Commun. 2019, 105, 86–92.10.1016/j.inoche.2019.04.042Suche in Google Scholar

13. Jin, F. An excellently stable heterovalent copper-organic framework based on Cu4I4 and Cu(COO)2N2 SBUs: the catalytic performance for CO2 cycloaddition reaction and Knoevenagel condensation reaction. Inorg. Chem. Commun. 2020, 116, 107940; https://doi.org/10.1016/j.inoche.2020.107940.Suche in Google Scholar

14. Hou, S., Ren, P., Zeng, Y. The crystal structure of 3-amino- 5-carboxypyridin-1-ium perchlorate monohydrate, C6H9ClN2O7. Z. Kristallogr. N. Cryst. Struct. 2021, 236, 727–728; https://doi.org/10.1515/ncrs-2021-0062.Suche in Google Scholar

Received: 2021-09-06
Accepted: 2021-10-05
Published Online: 2021-10-18
Published in Print: 2021-12-20

© 2021 Chao-Jun Du et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. Redetermination of the crystal structure of 3-bromonitrobenzene at 200 K, C6H4BrNO2 – temperature effects on cell constants
  4. Crystal structure of (E)-ethyl 2-((4-oxo-4H-chromen-3-yl)methyleneaminooxy)acetate, C14H13NO5
  5. Crystal structure of (8R,10R,14R, Z)-2-((3–Fluoropyridin-4-yl) methylene)-12-hydroxy-4,4,8,10,14-pentamethyl-17-((R)-2,6, 6-trimethyltetrahydro-2H-pyran-2-yl) hexadecahydro-3H-cyclopenta[a] phenanthren-3-one, C36H52FNO3
  6. Crystal structure of [6,6′-((1E,1′E)-(propane-1,3- diylbis(azaneylylidene))bis(methaneylylidene)) bis(3-chlorophenol)-κ4N,N′,O,O′] copper(II), C17H14Cl2CuN2O2
  7. The crystal structure of 6-amino-2-carboxypyridin-1-ium bromide, C6H7BrN2O2
  8. Redetermination of the crystal structure of bis[N,N′-ethylenebis(acetylacetoniminato)nickel(II)] sodium perchlorate, C24H36ClN4NaNi2O8
  9. The crystal structure of 3-methyl-2,6-dinitrophenol, C7H6N2O5
  10. The crystal structure of 5-chloro-2-(quinolin-8-yl)isoindoline-1,3-dione, C17H9ClN2O2
  11. Crystal structure of trans-tetraaqua-bis{2-carboxy-4-((5-carboxypyridin-3-yl)oxy)benzoato-κ1 N}cobalt(II) dihydrate C28H28O20N2Co
  12. Crystal structure of 3-allyl-4-(2-bromoethyl)-5-(4-methoxyphenyl)-2-(p-tolyl)furan, C23H23BrO2
  13. The crystal structure of 6,6′-(((2-(dimethylamino)ethyl)azanediyl)bis(methylene))bis(benzo[d][1,3]dioxol-5-ol ato-κ4N,N′,O,O′)-(pyridine-2,6-dicarboxylato-N,O,O′)-titanium(IV)-dichloromethane(1/1), C27H25N3O10Ti
  14. Crystal structure of (((1E,1′E)-1,2-phenylenebis(methaneylylidene))bis(hydrazin-1-yl-2-ylidene))bis(aminomethaniminium) dinitrate C10H16N10O6
  15. Crystal structure of catena-poly[triaqua-(μ 2-1,3-di(1H-imidazol-1-yl)propane-κ 2 N:N′)-(4,4′-(1H-1,2,4-triazole-3,5-diyl)dibenzoato-κ 1 O)nickel(II)]N,N′-dimethylformamide (1/1), C28H35N8O8Ni
  16. The crystal structure of 3,3′-[1,4-phenylenebis(methylene)]bis(1-ethenyl-1H-imidazol-3-ium) dichloride – dichloromethane – water (1/1/1), C19H24Cl4N4O1
  17. Crystal structure of 1,1′-(methane-1,1-diyl)bis(3-propyl-1H-imidazol-3-ium) bis(hexafluoridophosphate), C13H22F12N4P2
  18. Crystal structure of dichlorido-bis(4-chlorophenyl-κC 1)tin(IV), C12H8Cl4Sn
  19. Synthesis and crystal structure of 4-acetylpyrene, C18H12O
  20. Crystal structure of 2,2′-(butane-1,4-diylbis(azanylylidene))bis(methanylylidene))bis(4-methoxyphenol), C20H24N2O4
  21. The crystal structure of (E)-2-(((5-((triphenylstannyl)thio)-1,3,4-thiadiazol-2-yl)imino)methyl)phenol, C27H21N3OS2Sn
  22. Crystal structure of diaqua-bis(μ2-6-phenylpyridine-2-carboxylate-κ3N,O:O)-bis(6-phenylpyridine-2-carboxylato-κ2N,O)lead(II) – N,N-dimethylformamide – water (1/2/4), C54H58N6O16Pb2
  23. Crystal structure of methyl 4-acetoxy-3-methoxybenzoate, C11H12O5
  24. Crystal structure of 2,2′-(propane-1,3-dilylbis(azaneylylidene))bis(methanylylidene)bis(4-methylphenol), C19H22N2O2
  25. Crystal structure of dichlorido-bis(4-methylphenyl-κC1)tin(IV), C14H14Cl2Sn
  26. Crystal structure of methyl (E)-3-(4-acetoxyphenyl)acrylate, C12H12O4
  27. The crystal structure of bis(benzoato-κ2 O,O′)-(2,9-dimethyl-1,10-phenanthroline-κ2 N,N′)-copper(II), C28H22CuN2O4
  28. Crystal structure of (8R,10R,14R,Z)-12-hydroxy-2-((6-methoxypyridin-2-yl)methylene)-4,4,8,10,14-pentamethyl-17-((R)-2,6,6-trimethyltetrahydro-2H-pyran-2-yl)hexadecahydro-3H-cyclopenta[a]phenanthren-3-one–water (2/1), C37H56NO4.5
  29. Crystal structure of dimethyl-bis(4-bromophenyl-κC1)tin(IV), C14H14Br2Sn
  30. The crystal structure of the cocrystal di-μ2-chlorido-octamethyl-di-μ3-oxido-bis(2,3,4,5-tetrafluorobenzoato-κ2 O,O′)tetratin(IV) ─ octamethyl-di-μ3-oxido-bis(μ2-2,3,4,5-tetrafluorobenzoato-κ2 O:O′)-bis(μ2-2,3,4,5-tetrafluorobenzoato-κ2 O:O;O′)tetratin(IV) C58H54Cl2F24O16Sn8
  31. Crystal structure of 3-iodo-N 2-(2-methyl-1-(methylsulfonyl)propan-2-yl)-N 1-(2-methyl-4-(perfluoropropan-2-yl)phenyl)phthalamide, C23H22F7I1N2O4S1
  32. Crystal structure of 1-(2-(4-bromophenyl)-2,3-dihydro-1H-benzo[e]indol-1-yl)-naphthalen-2-ol – dichloromethane – dimethyl sulfoxide (1/1/1), C28H18BrNO·CH2Cl2·C2H6SO
  33. Crystal structure of [meso-5,7,7,12,14,14,-hexamethyl-1,4,8,11-tetraazacyclotetradecane]nickel(II) diperchlorate – dimethylsulphoxide (1/2), C20H48Cl2N4NiO10S2
  34. Crystal structure of 1,1′-(1,3-phenylenebis(methylene))bis(pyridin-1-ium) bis(1,2-dicyanoethene-1,2-dithiolato-κ2 S:S) palladium(II), C26H18N6PdS4
  35. The crystal structure of bis(6-phenylpyridine-2-carboxylato-κ2 N,O)copper(II), C24H16N2O4Cu
  36. Crystal structure of dichlorido-bis(4-chlorophenyl-κC)-bis(triphenylarsine oxide-κO)tin(IV), C48H38As2Cl4O2Sn
  37. Crystal structure of (4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane-κ 8 N 2, O 6) potassium cyclopentadienide, [K([2.2.2]crypt)]Cp, C23H41KN2O6
  38. The crystal structure of bis(2-oxidopyridin-1-ium-3-carboxylato-κ2O,O′)-(phenantroline-κ2N,N′)manganese(II) - methanol (1/3), C27H28N4O9Mn
  39. Crystal structure of 4-(dimethylamino)pyridinium dibromido-tris(4-chlorophenyl-κC)stannate(IV), C25H23Br2Cl3N2Sn
  40. Crystal structure of (3E,5E)-1-(4-cyanobenzenesulfonyl)-3,5-bis(3-fluorobenzylidene)piperidin-4-one-dichloromethane (1/1), C27H20Cl2F2N2O3S
  41. Crystal structure of (3E,5E)-3,5-bis(4-fluorobenzylidene)-1-((4-trifluoromethyl)benzenesulfonyl)piperidin-4-one, C26H18F5NO3S
  42. Crystal structure of chlorido-(4-methyl-2-((phenylimino)methyl)phenolato-κ2 N,O)-(pyridine-κ1 N)platinum(II), C19H17ClN2OPt
  43. Crystal structure of (4-methylbenzyl)(triphenyl)phosphonium chloride dihydrate, C26H28ClO2P
  44. The crystal structure of poly[μ2-chlorido-(μ2-1,2-bis(4-pyridyl)ethane-κ2N:N′silver(I)], C12H12AgClN2
  45. Crystal structure of poly[(μ4-benzene-1,2,4,5-tetracarboxylato)-bis(μ2-adipohydrazide)dicadmium], C11H15N4O6Cd
  46. The crystal structure of (E)-N′-(butan-2-ylidene)isonicotinohydrazide 0.5 hydrate C10H13N3O·0.5H2O
  47. The crystal structure of bis(6-phenylpyridine-2-carboxylate-κ2 N,O)-(2,2′-bipyridine-κ2 N,N′)zinc(II) monohydrate, C34H26N4O5Zn
  48. The crystal structure of (1R *,2S *)-1,2-bis(2-fluorophenyl)-3,8-dimethoxyacenaphthene-1,2-diol, C26H20F2O4
  49. Crystal structure of catena-poly[(μ2-1-((2-ethyl-4-methyl-1H-imidazol-1-yl)methyl)-1H-benzotriazole-κ2N:N′)-(nitrato-κ2O,O′)silver (I)], C13H15Ag1N6O3
  50. The crystal structure of [(phenantroline-κ2 N,N′)-bis(6-phenylpyridine-2-carboxylate-κ2 N,O)cobalt(II)]monohydrate, C36H26N4O5Co
  51. Crystal structure of (1E)-N-[(1E)-1-(4-chlorophenyl)ethylidene]-2-[1-(4-chlorophenyl)ethylidene]hydrazine-1-carbohydrazonamide, C 17 H 17 Cl 2 N 5
  52. The crystal structure of (E)-2-((tert-butylimino)methyl)-4-chlorophenol, C11H14ClNO
  53. Crystal structure of all-cis-2,4,6-trihydroxycyclohexane- 1,3,5-triaminium chloride sulfate, C6H18ClN3O7S
  54. Crystal structure of dichlorido-bis(dimethyl sulfoxide-κO)bis(4-methylphenyl-κC 1)tin(IV), C18H26Cl2O2S2Sn
  55. Crystal structure of dichlorido-bis(4-chlorophenyl-κC 1)(2,2′-bipyridyl-κ 2 N,N′)tin(IV), C22H16Cl4N2Sn
  56. Redetermination of the crystal structure of (E)-5-bromo-2-hydroxybenzaldehyde oxime, C 7 H 6 BrNO 2
  57. The crystal structure of (E)-amino(2-(4-methylbenzylidene)hydrazineyl)methaniminium 4-methylbenzoate, C9H13N4 + C8H7O2
  58. Crystal structure of 2-chloro-3-(isopentylamino)naphthalene-1,4-dione, C 15 H 16 ClNO 2
  59. The crystal structure of bis(2-acetyl-5-methoxyphenyl)carbonate 1.5 hydrate, C19H18O7
  60. The crystal structure of poly[(μ 4-4,4′-(azanediylbis(methylene))dibenzoato-κ 4 O:N:O′:Oʺ)zinc(II)], C16H13NO4Zn
  61. The crystal structure of catena-poly[(1,10-phenanthroline-k2N,N′)-(μ3-tetraoxidomoybdato(VI)-k3O:O′:O″)manganese(II)] C12H8N2O4MoMn
  62. Crystal structure of catena-poly[(4-hydroxyl-5-(methoylcarbonyl)thiophene-2-carboxylato-κ1 O)-(μ2-piperazine-1,4-diylbis(pyridin-4-ylmethanone)-κ2 N:N′)silver(I)] monohydrate, C23H23AgN4O8S
  63. Crystal structure of bis(4-bromo-2-(((3-bromopropyl)imino)methyl)phenolato-κ2N,O)-oxido-vanadium(IV), C20H20Br4N2O3V
  64. The crystal structure of (2a′S,2a1′S,3R,5a′S,7′R)-5-(furan-3-yl)-2a′,2a1′-dihydroxy-7′-methyldecahydro-2H-spiro[furan-3,6′-naphtho[1,8-bc]furan]-2,2′(2a′H)-dione, C19H22O7
  65. The crystal structure of 3-bromopicolinic acid, C6H4BrNO2
  66. Crystal structure of 1,1′-(1,4-phenylenebis(methylene))bis(pyridin-1-ium) bis(1,2-dicyanoethene-1,2-dithiolato-κ2 S,S) platinum(II), C26H18N6PtS4
  67. Synthesis and crystal structure of 5-(8-((3-carboxyazetidin-1-ium-1-yl)methyl)-7-hydroxy-4-oxo-4H-chromen-3-yl)-2-hydroxybenzenesulfonate monohydrate, C20H19NO10S
  68. The crystal structure of 3-amino-5-carboxypyridin-1-ium bromide, C6H7BrN2O2
  69. The crystal structure of (2-hydroxy-5-methyl-phenyl)-(1H-pyrazol-4-yl)-methanone hemihydrate, C11H10.5N2O2.5
  70. Crystal structure of tetraaqua-(2-(4-formylphenoxy)acetato-k1O)cadmium(II), C18H22O12Cd
  71. Crystal structure of diethyl 6,12-dimethyl-3,9-di-p-tolyl-3,9-diazapentacyclo[6.4.0.02,7.04,11.05,10]dodecane-1,5-dicarboxylate, C32H38N2O4
  72. Crystal structure of (E)-N′-(1-(3-chloro-4-fluorophenyl)ethylidene)-4-hydroxy – tetrahydrofuran (2/1), C17H16ClFN2O2.5
Heruntergeladen am 16.11.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2021-0352/html
Button zum nach oben scrollen