Home Crystal structure of all-cis-2,4,6-trihydroxycyclohexane- 1,3,5-triaminium chloride sulfate, C6H18ClN3O7S
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Crystal structure of all-cis-2,4,6-trihydroxycyclohexane- 1,3,5-triaminium chloride sulfate, C6H18ClN3O7S

  • Vyara Velcheva , Kaspar Hegetschweiler and Galina Gencheva ORCID logo EMAIL logo
Published/Copyright: September 22, 2021

Abstract

C6H18ClN3O7S, trigonal, P31c (no. 159), a = 8.3990(14) Å, b = 8.3990(14), c = 9.6208(17) Å, V = 587.76(17) Å3, Z = 2, R gt (F) = 0.0497, wR ref (F2) = 0.1404, T = 300.15 K.

CCDC no.: 2098902

The molecular structure of the title compound and 3D packing along a-axis are presented in the Figure. Table 1 contains crystallographic data and Table 2 contains the list of atoms, including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless prism
size: 0.45 × 0.07 × 0.05 mm
Wavelength: MoKα radiation (0.71073 Å)
μ: 0.54 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θmax, completeness: 25.7°, >99%
N(hkl)measured, N(hkl)unique, Rint: 1923, 753, 0.046
Criterion for Iobs, N(hkl)gt: Iobs > 2σ(Iobs), 648
N(param)refined: 57
Programs: Bruker [1, 2], SHELX [3, 4], Olex2 [5], Mercury [6]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2). The sign (*) distinguishes the isotropic parameters (Uiso*) from equivalent isotropic parameters (Ueq )

Atom X Y Z Uiso/Ueq
Cl1 0.666667 0.333333 0.1949 (5) 0.0319 (11)
S1 0.666667 1.333333 0.6444 (3) 0.0215 (8)
O1 0.7954 (8) 0.9966 (7) 0.5153 (7) 0.0272 (14)
H1 0.743824 1.054749 0.534496 0.041*
O2S 0.5753 (8) 1.1402 (6) 0.5971 (7) 0.0306 (13)
O3S 0.666667 1.333333 0.8028 (10) 0.026 (2)
N1 0.6599 (8) 0.6608 (8) 0.3708 (7) 0.0237 (15)
H1A 0.651569 0.563658 0.326896 0.028*
H1B 0.560576 0.669403 0.352483 0.028*
H1C 0.667730 0.648046 0.461927 0.028*
C2 0.8202 (10) 0.9990 (11) 0.3714 (10) 0.0207 (15)
H2 0.716462 1.000265 0.325758 0.025*
C1 0.8266 (11) 0.8302 (11) 0.3223 (8) 0.0206 (16)
H1D 0.825454 0.829876 0.220471 0.025*

Source of material

Single crystals of the title compound were obtained during the interaction of 2,4,6-triaminocyclohexane-1,3,5-triol·1.5H2SO4 [7] (0.1 g, 0.32 mmol) and K2PtI6 (molar ratio: Pt:taci = 1) at pH 3 in the presence of diluted HCl (0.002 mol/L) and heating at T = 60 °C for 3 h. Colorless crystals were separated from the reaction system a few hours later.

Experimental details

All hydrogen atoms are placed on their calculated positions and constrained to ride on their parent atoms. The absolute structure was established by anomalous dispersion [8], Flack parameter is -0.08(11).

Comment

The title compound is the triprotonated form of the ligand all-cis-2,4,6-triaminocyclohexane-1,3,5-triol, which is known by a trivial name taci. The remarkable coordination ability of taci to various metal cations and the structure of most of its complexes, some of which with a proven bioactivity profile, have been studied in detail [9]. The determination of the crystal structure of the neutral compound as taci· 2H2O [10] and of those compounds in which taci participates as protonated cations [11], [12], [13] has been previously reported. In this study, the crystal structure of the triprotonated taci balanced with sulfate and chloride counter anions is presented.

The asymmetric unit of the structure contains 1/3 of [H3taci]3+ and 1/3 of each counter ion. The [H3taci]3+ cations adopt a chair conformation with three hydroxy groups (O–C - 1.398 Å) in axial and three azaniumyl groups (N–C - 1.486 Å) in equatorial position (left part of the figure). The sulfate ions possess typical tetrahedral geometry as the S and O3S atoms occupy a special position on a 3-fold axis while O2S-atom resides in a general position, forming three crystallographically equivalent bonds of all four sulfur oxygen bonds in the anion. The 3D packing of the title compound is constructed of alternating planes parallel to the ab-plane of the crystal cell where the [H3taci]3+ cations are disposed. The distance between adjacent planes is 4.810 Å. The sulfate and chloride anions are located between the planes. In detail, the sulfate anions are located almost in the middle of a channel, forming nine hydrogen bonds with surrounding [H3taci]3+ cations (right part of the figure): 3 with hydroxy groups (O⃛O2S - 2.779(9) Å) and 3 with azaniumyl groups (N⃛O2S$1 - 2.780(9) Å, $1 = −x + y, −x + 1, z) from the upper plane; and 3 H-bonds with azaniumyl groups from the bottom plane (N⃛O3S$2 - 2.844(6) Å; $2 = +y − 1, x, z − 0.5). The Cl anions are located closer to the plane here noted as bottom, forming hydrogen bonds only with azaniumyl groups (N⃛Cl1 = 3.254(7) Å). To our point of view, the higher symmetry of the structure is shaped by the H-bonding network.


Corresponding author: Galina Gencheva, Faculty of Chemistry and Pharmacy, Sofia University, “St. Kliment Ohridski” 1, J. Bourchier Blvd., 1164 Sofia, Bulgaria, E-mail:

Funding source: Bulgarian National Science Fund, Ministry of Education and Science of Bulgaria

Award Identifier / Grant number: DN09/16

Acknowledgements

The authors express their gratitude to Dr. Angel Ugrinov, North Dakota State University.

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: National Science Fund, Bulgarian Ministry of Education and Science, Grant No DN09/16.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2021-08-09
Accepted: 2021-09-09
Published Online: 2021-09-22
Published in Print: 2021-12-20

© 2021 Vyara Velcheva et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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