Startseite The crystal structure of ethyl 2-amino-4-(cyanophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carboxylate, C19H18N2O4
Artikel Open Access

The crystal structure of ethyl 2-amino-4-(cyanophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carboxylate, C19H18N2O4

  • Zhang Li ORCID logo EMAIL logo und Yu Hai-Yan
Veröffentlicht/Copyright: 1. Oktober 2024

Abstract

C19H18N2O4, triclinic, P21/n (no. 14), a = 11.930(6) Å, b = 7.638(4) Å, c = 18.370(4) Å, β = 97.959(9)°, V = 1657.9(13) Å3, Z = 4, R gt (F) = 0.0497, wRref (F 2) = 0.1437, T = 296(2) K.

CCDC no.: 2384282

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless block
Size: 0.29 × 0.24 × 0.21 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.10 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θ max, completeness: 28.5°, >99 %
N(hkl)measured, N(hkl)unique, R int: 10,157, 4,085, 0.032
Criterion for I obs, N(hkl)gt: I obs > 2σ(I obs), 2,841
N(param)refined: 236
Programs: Bruker 1 , Olex2 2 , SHELX 3 , 4
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
C1 0.75682 (15) −0.0751 (3) 0.72892 (11) 0.0583 (5)
H1A 0.753771 −0.201511 0.733417 0.070*
H1B 0.788970 −0.027157 0.776109 0.070*
C2 0.82699 (16) −0.0272 (3) 0.67285 (11) 0.0670 (6)
H2A 0.792347 −0.069317 0.625826 0.100*
H2B 0.900648 −0.078764 0.684708 0.100*
H2C 0.834075 0.097841 0.671187 0.100*
C3 0.58202 (14) 0.0259 (2) 0.76101 (9) 0.0411 (4)
C4 0.47111 (13) 0.0913 (2) 0.73216 (8) 0.0364 (3)
C5 0.39825 (14) 0.1307 (2) 0.77968 (8) 0.0410 (4)
C6 0.24591 (13) 0.1521 (2) 0.68371 (8) 0.0396 (4)
C7 0.31258 (12) 0.12308 (19) 0.63290 (8) 0.0353 (3)
C8 0.43931 (12) 0.12062 (19) 0.65055 (8) 0.0332 (3)
H8 0.467778 0.021457 0.624643 0.040*
C9 0.12076 (14) 0.1603 (3) 0.67099 (10) 0.0513 (4)
H9A 0.094995 0.253877 0.700294 0.062*
H9B 0.089839 0.051048 0.686343 0.062*
C10 0.07861 (15) 0.1922 (3) 0.59106 (11) 0.0631 (5)
H10A −0.002223 0.170307 0.582231 0.076*
H10B 0.090896 0.314071 0.579679 0.076*
C11 0.13535 (15) 0.0801 (3) 0.54124 (11) 0.0618 (5)
H11A 0.111713 0.116575 0.490881 0.074*
H11B 0.111167 −0.040157 0.545893 0.074*
C12 0.26206 (13) 0.0881 (2) 0.55709 (9) 0.0420 (4)
C13 0.49243 (11) 0.28690 (19) 0.62538 (7) 0.0322 (3)
C14 0.57863 (12) 0.2782 (2) 0.58289 (8) 0.0383 (4)
H14 0.602990 0.170158 0.567810 0.046*
C15 0.62905 (13) 0.4305 (2) 0.56262 (8) 0.0455 (4)
C16 0.59375 (16) 0.5921 (2) 0.58354 (9) 0.0521 (5)
H16 0.627905 0.693882 0.569587 0.062*
C17 0.50723 (16) 0.6001 (2) 0.62537 (10) 0.0512 (4)
H17 0.482213 0.708271 0.639887 0.061*
C18 0.45719 (13) 0.4493 (2) 0.64599 (9) 0.0406 (4)
H18 0.398553 0.456894 0.674343 0.049*
C19 0.71870 (16) 0.4175 (3) 0.51764 (10) 0.0605 (5)
N1 0.41997 (17) 0.1357 (2) 0.85303 (8) 0.0561 (4)
H1C 0.359 (2) 0.140 (3) 0.8794 (12) 0.071 (6)*
H1D 0.490 (2) 0.097 (3) 0.8713 (13) 0.079 (7)*
N2 0.78706 (18) 0.4054 (3) 0.48128 (11) 0.0896 (7)
O1 0.64441 (9) −0.00630 (16) 0.70772 (6) 0.0448 (3)
O2 0.61719 (11) 0.0012 (2) 0.82548 (7) 0.0634 (4)
O3 0.28786 (9) 0.17702 (16) 0.75678 (6) 0.0478 (3)
O4 0.32137 (10) 0.06027 (18) 0.50958 (6) 0.0543 (3)

1 Source of materials

The title compound, ethyl 2-amino-4-(cyanophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carboxylate, was obtained by a three-component reaction using 4-(dimethylamino)pyridine (DMAP) as the catalyst. A 50 mL ethanol solution of 3-cyanobenzaldehyde (10 mmol), ethyl 2-cyanoacetate (10 mmol), and cyclohexane-1,3-dione (10 mmol), DMAP (1 mmol) was heated at 353 K for 5 h. The solid was filtered and recrystallized from an ethanol solution to give crystals of the title compound, yield 67.6 % (based on 3-cyanobenzaldehyde). Colorless block crystals were obtained by recrystallization.

2 Experimental details

The structure was solved by Direct Methods with the SHELXL-2014 program. All H-atoms from C atoms were positioned with idealized geometry and refined isotropically (U iso(H) = 1.2 U eq(C) or U eq(N)) using a riding model with C–H = 0.930, 0.960, 0.970 and 0.980 Å, and N–H = 0.861 and 0.861 Å, respectively.

3 Comment

Known as pharmacological activities, 2-amino-4H-pyran-3-carboxylate derivatives, such as ethyl 2-amino-4-(4-ethoxyphenyl)-5-oxo-5,6,7,8-tetrahydro-4H-1-benzopyran-3-carboxylate 5 and ethyl 2-amino-4-(phenyl)-7,7-dimethyl-5-oxo-5,6,7,8-tetrahydro-4H-1-benzopyran-3-carboxylate and their derivatives, 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 have been synthesized through a famous three-component reaction and their single crystal structures have been also reported. The title compound crystallizes in monoclinic system, P21/n group (no. 14) with the fomula of C19H18N2O4. Whereas the 3-cyanophenyl group is almost coplanar, the 4-hydropyran ring is slightly twisted from planarity. 14 The 1D chains are generated through the hydrogen bonds N1–H1A⋯N2, which are linked to form a 3D supramolecular structure by complicated hydrogen bonds C14–H14⋯O4, C16–H16⋯O4, and C2–H2A⋯O4. All the bond lengths and angles are similar to the reported results. 5 , 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14


Corresponding author: Zhang Li, School of Biological and Chemical Engineering, Nanyang Institute of Technology, Nanyang 473004, China, E-mail:

  1. Author contribution: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

1. Bruker. SAINT v7.60A; Bruker AXS Inc: Madison, Wisconsin, USA, 2009.Suche in Google Scholar

2. Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H. OLEX2: A Complete Structure Solution, Refinement and Analysis Program. J. Appl. Crystallogr. 2009, 42, 339–341. https://doi.org/10.1107/s0021889808042726.Suche in Google Scholar

3. Sheldrick, G. M. Crystal Structure Refinement with SHELXL. Acta Crystallogr. 2015, C71, 3–8. https://doi.org/10.1107/s2053229614024218.Suche in Google Scholar

4. Sheldrick, G. Using Phases to Determine the Space Group. Acta Crystallogr. 2018, A74, A353. https://doi.org/10.1107/s0108767318096472.Suche in Google Scholar

5. Chen, H.; Yang, G.; Liao, X.; Bao, Z.; Zhan, X. Crystal Structure and Anti-Lung Cancer Activity of Novel Pyran Derivatives from Traditional Chinese Medicine. Lat. Am. J. Pharm. 2018, 37, 359–362.Suche in Google Scholar

6. Shi, D.; Zhang, S.; Wang, X.; Zhuang, Q. Ethyl 2-Amino-4-(4-Fluorophenyl)-7,7-Dimethyl 5-Oxo-5,6,7,8-Tetrahydro-4H-Benzo[b]pyran-3-carboxylate. Acta Crystallogr. 2003, E59, o1501–o1502. https://doi.org/10.1107/s1600536803019834.Suche in Google Scholar

7. Khan, A. T.; Lal, M.; Ali, S.; Khan, M. M. One-Pot Three Component Reaction for the Synthesis of Pyran Annulated Heterocyclic Compounds Using DMAP as a Catalyst. Tetrahedron Lett. 2011, 52, 5327–5332. https://doi.org/10.1016/j.tetlet.2011.08.019.Suche in Google Scholar

8. Xiao, Y.-S.; Zhang, L.; Hu, W.-L.; Zhao, Y.-B.; Hu, H. In Vitro Activity of Synthesized Pyran Derivatives-Inhibitor Against Prostate Cancer. Lat. Am. J. Pharm. 2017, 36, 609–612.Suche in Google Scholar

9. Nongrum, R.; Nongthombam, G. R.; Kharkongor, M.; Rani, J. W. S.; Rahman, N.; Kathing, C.; Myrboh, B.; Nongkhlaw, R. A Nano-Organo Catalyzed Route towards the Efficient Synthesis of Benzo[b]pyran Derivatives Under Ultrasonic Irradiation. RSC Adv. 2016, 6, 108384–108392. https://doi.org/10.1039/c6ra24108e.Suche in Google Scholar

10. Yang, D.-Q.; Li, Z.-M. Crystal Structure of Ethyl 2-Amino-4-(3-Cyanophenyl)-7,7-Dimethyl-5-Oxo-5,6,7,8-Tetrahydro-4H-Chromene-3-Carboxylate, C21H22N2O4. Z. Kristallogr. N. Cryst. Struct. 2018, 233, 903–904. https://doi.org/10.1515/ncrs-2018-0089.Suche in Google Scholar

11. Ramireddy, N.; Abbaraju, S.; Ding, D.; Arman, H.; Zhao, J. C.-G. Organocatalyzed Enantioselective Synthesis of 2-Amino-4H-Chromene Derivatives. J. Heterocycl. Chem. 2017, 54, 677–691. https://doi.org/10.1002/jhet.2641.Suche in Google Scholar

12. Shin, S. Y.; Yoo, M.; Koh, D. The Crystal Structure of Ethyl 2-Amino-4-(3,5-Difluorophenyl)-7,7-Dimethyl-5-Oxo-5,6,7,8-Tetrahydro-4H-Chromene-3-Carboxylate, C20H21F2NO4. Z. Kristallogr. N. Cryst. Struct. 2021, 236, 307–309. https://doi.org/10.1515/ncrs-2020-0566.Suche in Google Scholar

13. Wang, X.-S.; Shi, D.-Q.; Tu, S.-J.; Yao, C.-S. A Convenient Synthesis of 5-Oxo-5,6,7,8-Tetrahydro-4H-Benzo-[b]-Pyran Derivatives Catalyzed by KF–Alumina. Synth. Commun. 2003, 33, 119–126. https://doi.org/10.1002/chin.200323120.Suche in Google Scholar

14. Fan, X.-X.; Shen, P.; Zhou, X.-H.; Khrustalev, V. N.; Rivera, D. G.; Nenajdenko, V. G. Three-Component Synthesis and Crystal Structure of 2-Amino-3-Cyano-4H-Pyran and -Thiopyran Derivatives. Russ. J. Org. Chem. 2022, 58, 1786–1796. https://doi.org/10.1134/s1070428022120077.Suche in Google Scholar

Received: 2024-07-16
Accepted: 2024-09-16
Published Online: 2024-10-01
Published in Print: 2024-12-17

© 2024 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. Crystal structure of 3-nitrophenol-2,1,3-benzoselenadiazole (1/1), C12H9N3O3Se
  4. Crystal structure of diaqua-(hydroxido)-{μ-[2-(hydroxy)-5-[(4-nitrophenyl)diazenyl]benzoato]}-{2-hydroxy-5-[(4-nitrophenyl)diazenyl]benzoato}-(1,10-phenanthroline)-diterbium hydrate, C38H27.4N8O12.2Tb
  5. Crystal structure of poly[bis(μ3-3-fluoro-4-(1H-1,2,4-triazol-1-yl)benzoato-κ3 O:O′:N)cadmium(II)] – dimethylformamide (1/1), C21H17CdF2N7O5
  6. The crystal structure of 2-amino-N-(pyridin-2-yl)benzamide, C12H11N3O
  7. The crystal structure of 2,3-di(pyridin-2-yl)-2,3-dihydroquinazolin-4(1H)-one, C18H14N4O
  8. Crystal structure of 2-chloro-4-fluorobenzyl (R)-2-(6-methoxynaphthalen-2-yl)propanoate, C21H18ClFO3
  9. Crystal structure of [1-(4-carboxyphenyl)-4-oxo-1,4-dihydropyridazine-3-carboxylic acid]-(methylsulfinyl)methane, C15H16N2O6S
  10. The crystal structure of 2-ethyl-1,1-dimethyl-1H-benzo[e]indole, C16H17N
  11. The crystal structure of (Z)-5-amino-N -hydroxy-1H-pyrazole-4-carboximidamide, C4H7N5O
  12. The crystal structure of 2,2,5-trimethyl-3-(4-(4-(5-phenyl-4,5-dihydroisoxazol-3-yl)thiazol-2-yl)phenyl)imidazolidin-4-one, C24H24N4O2S
  13. The crystal structure of tetrakis(μ2-acetato-κ2 O:O′)-bis[(4′-phenyl-4,2′:6′,4″-terpyridine-κ1 N)dicopper(II)], C25H21CuN3O4
  14. Crystal structure of poly(3-thiophenecarboxylato-κ 3 O,O′:O′)-(methanol-κO)cadmium(II), C11H10O5S2Cd
  15. The crystal structure of dichloridobis[4′-(p-methoxylphenyl)-4,2′:6′,4″-terpyridine-κN] zinc(II), C44H34Cl2N6O2Zn
  16. The crystal structure of 1-(2-carboxyethyl)-1H-imidazole 3-oxide
  17. Crystal structure of 1,1′,1″-(nitrilotris(ethane-2,1-diyl))tris(3-(4-(((E)-pyridin-2-ylmethylene)amino)phenyl)urea), C45H47N13O4
  18. Crystal structure of a (E)-4-bromo-N-(4-(diethylamino)-2-hydroxybenzylidene) benzenaminium acetate ─ 4-bromoaniline (1/1)
  19. Crystal structure of 2,2′-(iminobis(methylene))bis(benzimidazolium) bis(p-toluenesulfonate), C30H31N5O6S2
  20. The crystal structure of alogliptinium meta-chlorobenzoate
  21. Crystal structure of 4-bromobenzyl 2-(6-methoxy-naphthalen-2-yl)propanoate, C21H19BrO3
  22. The hydrated double salt structure of (E)-4-(2-benzylidenehydrazine-1-carbonyl)pyridin-1-ium cation with 2-hydroxybenzoate and benzoate anions
  23. Crystal structure of (R)(R)-5-chloro-3-((S,1E,3E)-3,5-dimethyl-hepta-1,3-dien-1-yl)-7-methyl-6,8-dioxo-2,6,7,8-tetrahydroisoquinolin-7-yl acetate, C21H24ClNO4
  24. The crystal structure of bis(3-oxo-1,3-diphenylprop-1-en-1-olato-κ 2 O:O′)-bis(1,4-dioxane-κ 1 O)nickel(II), C38H38O8Ni
  25. Crystal structure of poly[aqua-(pyridine-3-carboxylato-κ1 N)(pyridine-3-carboxylato-κ2 O,O′) cadmium(II)] dihydrate, C12H14N2O7Cd
  26. The crystal structure of 4-(4-phenyl-5-(((1-(2,4,6-tribromophenyl)-1H-1,2,3-triazol-4-yl)methyl)thio)-4H-1,2,4-triazol-3-yl)pyridine, C22H14Br3N7S
  27. The crystal structure of N-benzylquinoline-2-carbothioamide, C17H14N2S
  28. Crystal structure of bis(3-isopropylphenyl)-4,4′-bipyridinium dichloride dihydrate, C28H30N2⋅2Cl⋅2H2O
  29. The crystal structure of ethyl 2-amino-4-(cyanophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carboxylate, C19H18N2O4
  30. Crystal structure of (4R,10S)-6-hydroxy-7-isopropyl-4,10-dimethyl-1,2,3,5-hexahydro-6,10-epoxyazulen-9-one, C15H22O3
  31. The crystal structure of (E)-(2-(2-hydroxy-3-methoxybenzylidene)aminophenyl)arsonic acid, C14H14AsNO5
  32. The crystal structure of poly[(μ 2-2-aminoisophthalato-κ4O,O′:O″:O″′)-(N-methylpyrrolidone κ1O)-dioxido-uranium(VI)], C13H14N2O7U
  33. The crystal structure of the co-crystal isonicotinamide · terephthalic acid, C8H6O4·2(C6H6N2O)
  34. The crystal structure of (E)-1-phenyl-3-(p-tolylthio)but-2-en-1-one, C17H16OS
  35. The crystal structure of 4,5-bis((Z)-chloro(hydroxyimino)methyl)-1H-imidazol-3-ium chloride monohydrate
  36. The crystal structure of 1,2-bis(4-(dimethylamino)phenyl)ethane-1,2-dione. C18H20N2O2
  37. Crystal structure of 2-chloro-4-fluorobenzyl 2-acetoxybenzoate, C16H12ClFO4
  38. Crystal structure of methyl 1-phenyl-9H-pyrido[3,4-b]indole-3-carboxylate, C19H14N2O2
  39. Crystal structure of (3-(dimethoxymethyl)-5-methoxy-1H-indol-1-yl)(5-fluoro-2-iodophenyl)methanone, C19H17FINO4
  40. Crystal structure of tetrachlorido-bis(1-[(1H-triazole-1-yl)methyl]-1H-benzotriazole-κ2 N:N′)dicopper, C36H32Cu2N24Cl4
  41. Crystal structure of 2-(2,3-bis(4-methoxyphenyl)-1H-pyrrolo[2,3-b]quinoxalin-1-yl)anilin, C30H24N4O2
  42. Crystal structure of 5,7-dihydroxy-2-phenyl-4H-chromen-4-one–N,N-dimethylformamide(1/1), C18H17NO5
  43. The crystal structure of bis(μ 2-biphenyl-2,2′-dicarboxylato)-diaqua-bis(nitrato)-bis(2,2′:6′,2′′-terpyridine)dineodymium(III), C46H32I2N8Nd2O16
  44. Crystal structure of (Z)-4-amino-N -((4-chlorophenyl)(phenyl)methylene)benzohydrazide, C20H16ClN3O
  45. Crystal structure of (E)-6,8-dimethoxy-4-(4-morpholinobenzylidene)-3,4-dihydro-1-benzoxepin-5(2H)-one, C23H25NO5
  46. Crystal structure of (R)-2-((3-(3-aminopiperidin-1-yl)-6-methyl-5-oxo-1,2,4-triazin-4(5H)-yl) methyl)-4-fluorobenzonitrile benzoate monohydrate, C24H27FN6O4
  47. The crystal structure of [triaqua-(8-carboxymethoxy-quinoline-2-carboxylato-κ 3 N,O,O)copper(II)]monohydrate, C12H15NO9Cu
  48. Crystal structure of (((4-chlorophenyl)sulfonyl)glycinato-κ 2 N,O)bis(1,10-phenanthroline-κ 2 N,N′)cobalt(II) tetrahydrate, C32H30ClCoN5O8S
  49. Crystal structure of (((3-nitrophenyl)sulfonyl)-β-alaninato-κO)bis(2,2′-bipyridine-κ 2 N, N′)copper(II) 3-nitrobenzenesulfonate, C35H29CuN7O11S2
  50. Crystal structure of 3-phenoxybenzyl 2-(6-methoxynaphthalen-2-yl)propanoate, C27H24O4
  51. 6-(2′,3′-Dihydroxy-3′-methylbutyl)-7-methoxy-8-(3″-methylbut-2″-en-1″-yl)-2H-chromen-2-one, C20H26O5
  52. Crystal structure of bromido-(2,2′:6′,2″-terpyridine-4′-onato-κ3N)palladium(II) methanol solvate
  53. The crystal structure of ethyl 2-amino-(4-nitrophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carboxylate, C20H22N2O6
  54. Crystal structure of (1E,3E,5E)-1,6-bis(4-(pentyloxy)phenyl)hexa-1,3,5-triene, C28H36O2
  55. The crystal structure of tris(2-bromo-4-methylphenyl)amine, C21H18Br3N
  56. The crystal structure of 3-(2,5-dimethylanilino)-1-(2,5-dimethylphenyl)-4-methyl-1H-pyrrole-2,5-dione, C21H22N2O2
  57. Crystal structure of dicarbonyl (μ2-indole-2-carboxylato κ2 O:O′)tris(triphenylarsine-κAs)dirhodium(I) acetone solvate, C68H56As3NO5Rh2
  58. The crystal structure of 4-chloro-2-formylphenyl 4-methylbenzenesulfonate, C14H11ClO4S
  59. Crystal structure of 4-iodobenzyl 2-(6-methoxynaphthalen-2-yl) propanoate, C21H19IO3
Heruntergeladen am 6.9.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2024-0305/html
Button zum nach oben scrollen