Home Crystal structure of N-((3s,5s,7s)-adamantan-1-yl)-2-(3-benzoylphenyl)propanamide, C26H29NO2
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Crystal structure of N-((3s,5s,7s)-adamantan-1-yl)-2-(3-benzoylphenyl)propanamide, C26H29NO2

  • Li-Na Gao , Ye Gu , Feng Jin , Duo Hao and Xin-Ru Zhang ORCID logo EMAIL logo
Published/Copyright: April 20, 2022

Abstract

C26H29NO2, triclinic, P 1 (no. 2), a = 10.8490(8) Å, b = 13.2892(9) Å, c = 14.7199(10) Å, α = 89.161(3)°, β = 79.991(2)°, γ = 85.746(2)°, V = 2084.2(3) Å3, Z = 4, R gt (F) = 0.0641, wR ref (F 2) = 0.1449, T = 170 K.

CCDC no.: 2158053

The crystal structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Needle, colorless
Size: 0.07 × 0.05 × 0.02 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.08 mm−1
Diffractometer, scan mode: Bruker D8 VENTURE, φ and ω-scans
θ max, completeness: 26.4°, >99%
N(hkl)measured, N(hkl)unique, R int: 24,187, 8510, 0.087
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 4647
N(param)refined: 525
Programs: Bruker programs [1], OLEX2 [2], SHELX [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

x y z U iso*/U eq
O1 0.41944 (17) 0.64618 (13) 0.53751 (13) 0.0367 (5)
O2 0.22477 (17) 0.16961 (13) 0.39002 (13) 0.0359 (5)
O3 0.05772 (17) 0.37384 (13) 0.80212 (13) 0.0387 (5)
O4 −0.18575 (18) −0.10893 (13) 0.97631 (13) 0.0385 (5)
N1 0.4200 (2) 0.22835 (15) 0.36273 (15) 0.0301 (5)
H1 0.467632 0.270759 0.382933 0.036*
N2 0.1894 (2) 0.28132 (16) 0.88122 (15) 0.0312 (6)
H2A 0.193388 0.229561 0.918833 0.037*
C1 0.3389 (3) 0.8493 (2) 0.49712 (18) 0.0319 (7)
H1A 0.426794 0.835949 0.478366 0.038*
C2 0.2874 (3) 0.9479 (2) 0.50782 (19) 0.0385 (8)
H2 0.339941 1.002332 0.495110 0.046*
C3 0.1601 (3) 0.9672 (2) 0.5369 (2) 0.0401 (8)
H3 0.125495 1.034927 0.545093 0.048*
C4 0.0827 (3) 0.8888 (2) 0.55409 (19) 0.0350 (7)
H4 −0.004942 0.902392 0.574400 0.042*
C5 0.1331 (2) 0.79048 (19) 0.54165 (17) 0.0281 (6)
H5 0.079431 0.736603 0.552172 0.034*
C6 0.2610 (2) 0.76951 (19) 0.51397 (17) 0.0257 (6)
C7 0.3190 (2) 0.66463 (19) 0.51010 (18) 0.0289 (6)
C8 0.2559 (2) 0.58170 (18) 0.47470 (17) 0.0250 (6)
C9 0.2895 (2) 0.48202 (18) 0.49771 (18) 0.0261 (6)
H9 0.349100 0.469448 0.537543 0.031*
C10 0.2378 (2) 0.40133 (19) 0.46369 (18) 0.0263 (6)
C11 0.1530 (2) 0.42127 (19) 0.40351 (18) 0.0314 (7)
H11 0.117687 0.366787 0.378682 0.038*
C12 0.1196 (2) 0.5190 (2) 0.37941 (19) 0.0336 (7)
H12 0.061925 0.531211 0.338058 0.040*
C13 0.1698 (2) 0.5993 (2) 0.41529 (18) 0.0293 (6)
H13 0.145457 0.666534 0.399348 0.035*
C14 0.2712 (2) 0.29479 (18) 0.49404 (18) 0.0279 (6)
H14 0.347783 0.296034 0.523149 0.033*
C15 0.1662 (2) 0.2564 (2) 0.56602 (19) 0.0339 (7)
H15A 0.093189 0.246405 0.537050 0.051*
H15B 0.142510 0.305909 0.615813 0.051*
H15C 0.195351 0.192102 0.591370 0.051*
C16 0.3029 (2) 0.22410 (18) 0.41076 (18) 0.0271 (6)
C17 0.4769 (2) 0.16949 (19) 0.27988 (18) 0.0282 (6)
C18 0.4892 (3) 0.05732 (19) 0.30293 (18) 0.0326 (7)
H18A 0.404854 0.032784 0.323367 0.039*
H18B 0.537426 0.046619 0.353949 0.039*
C19 0.5562 (3) −0.0018 (2) 0.21806 (19) 0.0375 (7)
H19 0.565010 −0.075047 0.234037 0.045*
C20 0.6860 (3) 0.0359 (2) 0.1851 (2) 0.0454 (8)
H20A 0.728770 −0.002791 0.130154 0.055*
H20B 0.737543 0.025776 0.234258 0.055*
C21 0.6074 (2) 0.2064 (2) 0.24681 (19) 0.0349 (7)
H21A 0.599946 0.279357 0.232332 0.042*
H21B 0.658354 0.196650 0.296337 0.042*
C22 0.6723 (3) 0.1481 (2) 0.1610 (2) 0.0416 (8)
H22 0.757226 0.173031 0.139676 0.050*
C23 0.5942 (3) 0.1628 (2) 0.08409 (19) 0.0413 (8)
H23A 0.585979 0.235116 0.067494 0.050*
H23B 0.636246 0.124722 0.028560 0.050*
C24 0.4646 (3) 0.1250 (2) 0.11747 (19) 0.0360 (7)
H24 0.413216 0.134882 0.067391 0.043*
C25 0.4777 (3) 0.0126 (2) 0.14111 (19) 0.0386 (7)
H25A 0.519246 −0.026106 0.085831 0.046*
H25B 0.393724 −0.012541 0.161747 0.046*
C26 0.3995 (2) 0.1852 (2) 0.20267 (18) 0.0306 (7)
H26A 0.391196 0.257804 0.186998 0.037*
H26B 0.314356 0.162348 0.223474 0.037*
C27 0.3080 (2) 0.32883 (19) 0.84786 (18) 0.0277 (6)
C28 0.4109 (2) 0.26850 (19) 0.88859 (19) 0.0307 (7)
H28A 0.389897 0.269978 0.956776 0.037*
H28B 0.416094 0.197305 0.868501 0.037*
C29 0.5371 (3) 0.3126 (2) 0.85723 (19) 0.0368 (7)
H29 0.603460 0.271903 0.883905 0.044*
C30 0.5700 (3) 0.3104 (2) 0.7523 (2) 0.0462 (8)
H30A 0.575989 0.239906 0.730172 0.055*
H30B 0.652166 0.338671 0.731867 0.055*
C31 0.3420 (3) 0.3271 (2) 0.74241 (18) 0.0364 (7)
H31A 0.347420 0.256791 0.720049 0.044*
H31B 0.275978 0.366341 0.715419 0.044*
C32 0.4679 (3) 0.3727 (2) 0.7121 (2) 0.0431 (8)
H32 0.489450 0.371792 0.643220 0.052*
C33 0.4588 (3) 0.4814 (2) 0.7459 (2) 0.0499 (9)
H33A 0.539701 0.511637 0.725325 0.060*
H33B 0.392977 0.521676 0.719538 0.060*
C34 0.4267 (3) 0.4828 (2) 0.8508 (2) 0.0405 (8)
H34 0.421323 0.554040 0.872932 0.049*
C35 0.5294 (3) 0.4211 (2) 0.8908 (2) 0.0433 (8)
H35A 0.611053 0.450411 0.870841 0.052*
H35B 0.509893 0.422782 0.959019 0.052*
C36 0.3004 (2) 0.43794 (19) 0.8821 (2) 0.0332 (7)
H36A 0.233784 0.478587 0.856992 0.040*
H36B 0.279020 0.439345 0.950269 0.040*
C37 0.0757 (3) 0.30912 (19) 0.85996 (19) 0.0297 (6)
C38 −0.0321 (2) 0.25326 (19) 0.91357 (19) 0.0303 (6)
H38 −0.005128 0.224587 0.970803 0.036*
C39 −0.1457 (3) 0.3283 (2) 0.9421 (2) 0.0451 (8)
H39A −0.122647 0.381884 0.979680 0.068*
H39B −0.214350 0.293227 0.978121 0.068*
H39C −0.172851 0.357987 0.886867 0.068*
C40 −0.0644 (2) 0.16670 (19) 0.85761 (18) 0.0280 (6)
C41 −0.1085 (2) −0.00924 (19) 0.84789 (18) 0.0279 (6)
C42 −0.0817 (2) 0.07249 (19) 0.89804 (19) 0.0291 (6)
H42 −0.075183 0.063417 0.961208 0.035*
C43 −0.1212 (2) 0.0043 (2) 0.75641 (19) 0.0329 (7)
H43 −0.138066 −0.050983 0.721388 0.039*
C44 −0.1093 (3) 0.0987 (2) 0.71620 (19) 0.0370 (7)
H44 −0.121459 0.108908 0.654260 0.044*
C45 −0.0797 (3) 0.1784 (2) 0.76609 (19) 0.0349 (7)
H45 −0.069633 0.242341 0.737185 0.042*
C46 −0.1286 (2) −0.1076 (2) 0.89638 (19) 0.0301 (6)
C47 0.0337 (3) −0.2093 (2) 0.78646 (19) 0.0336 (7)
H47 0.070730 −0.148937 0.764773 0.040*
C48 −0.0761 (2) −0.20400 (19) 0.85006 (18) 0.0277 (6)
C49 0.0906 (3) −0.3015 (2) 0.7539 (2) 0.0355 (7)
H49 0.167701 −0.304424 0.711639 0.043*
C50 0.0352 (3) −0.3893 (2) 0.7829 (2) 0.0365 (7)
H50 0.073884 −0.452640 0.760396 0.044*
C51 −0.0763 (3) −0.3850 (2) 0.8446 (2) 0.0378 (7)
H51 −0.115107 −0.445340 0.863836 0.045*
C52 −0.1314 (3) −0.2935 (2) 0.87832 (19) 0.0346 (7)
H52 −0.207761 −0.291091 0.921284 0.041*

Source of materials

The ketoprofen (0.77 g, 3 mmol), oxalyl chloride (2.92 ml, 40 mmol) and one drop DMF were added to the reaction flask. The mixture was refluxed for 1 h and then the solvent was removed under reduced pressure. The residue was dissolved in 15 ml dichloromethane, followed by amantadine (0.37 g, 2.5 mmol) and triethylamine (0.42 ml, 3 mmol) at 0 °C and the reaction solution was stirred at room temperature for 3 h. After completion of the reaction, the solution was extracted three times with 15 ml methylene chloride. The organic phase was dehydrated with sodium sulfate and concentrated at reduced pressure to afford a light yellow solid. the solid was purified by column chromatography to give title compound (0.67 g), Yield 68.3%.

Experimental details

All hydrogen atoms were placed in geometrically calculated positions. The U iso values of the hydrogen atoms of methyl groups were set to 1.5 U eq (C methyl) and the U iso values of all other hydrogen atoms were set to 1.2 U eq(C).

Discussion

Adamantanamine and its derivatives play an important role in pharmaceuticals as well as medicinal chemistry because they possess a broad spectrum of biological activities [5], [6], [7], [8]. As a result, a great deal of attention has been paid to the investigation on the structure and property of amantadine and its derivatives. The aim of this study was to further optimize the organic synthesis and structural modification of amantadine amino based materials to design a suitable synthesis route to get novel compounds by a 1–2 steps reaction.

There are two crystallographically independent molecules in the asymmetric unit. Both molecules have almost the same geometric parameters. Thus only one of them is discussed in more detail (cf. the figure). The two aryl rings are linked by a keto group. Additionally, the amino-adamantyl moiety is attached to the second ketone group of the title molecules. The bond distances and angles are in their normal ranges according to the previously reported compounds [9], [10], [11].


Corresponding author: Xin-Ru Zhang, The Second Hospital of Jilin University, Changchun 130000, P. R. China, E-mail:

Funding source: Medical and Health Talents Special Project of Jilin Province

Award Identifier / Grant number: 2019SCZT086

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was supported by Medical and Health Talents Special Project of Jilin Province (2019SCZT086).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2022-03-07
Accepted: 2022-04-05
Published Online: 2022-04-20
Published in Print: 2022-08-26

© 2022 Li-Na Gao et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  54. The crystal structure of diaqua-bis(6-phenylpyridine-2-carboxylato-κ2N,O) manganese(II) — water — dimethylformamide (1/2/1), C27H31N3O9Mn
  55. The crystal structure of bis(pyrazolo[1,5-a]pyrimidine-3-carboxylato-κ2N,O)-copper(ii), C14H8N6O4Cu
  56. Crystal structure of poly[(μ2-1-(1-imidazolyl)-4-(imidazol-1-ylmethyl)benzene-κ2N:N′)-(μ3-pyridazine-4,5-dicarboxylate-κ3O:O′:N)]copper(II) hydrate, C19H16CuN6O5
  57. Crystal structure of acrinidinium tetrafluorohydrogenphthalate, C21H11F4NO4
  58. Crystal structure of 2-(1H-pyrazol-3-yl-κN)pyridine-κN-bis(2-(2,4-difluorophenyl)pyridinato-κ2C,N)iridium(III) sesquihydrate, C30H18F4IrN5·1.5[H2O]
  59. Crystal structure of 2-(2-hydroxy-5-nitrophenyl)-5-methyl-1,3-dioxane-5-carboxylic acid, C12H13N1O7
  60. The crystal structure of 1,2-bis(pyridinium-4-yl)ethane diperchlorate, C12H14N2·2ClO4 – a second polymorph
  61. The crystal structure of [(1,10-phenantroline-κ2N,N′)-bis(6-phenylpyridine-2-carboxylato-κ2N,O)manganese(II)] monohydrate, C36H26N4O5Mn
  62. Crystal structure of 1,2-bis(2,2,3,3,5,5,5-heptamethyl-1,1,4,4- tetrakis(trimethylsilyl)pentasilan-1-yl)ditellane, C38H114Si18Te2
  63. Crystal structure of 1,2-bis(2,4-dinitro-1H-imidazol-1-yl)ethane – dimethylformamide (1/1), C11H13N9O9
  64. Crystal structure of (Z)-3-((tert-butylamino) methylene)-2-(2-hydroxynaphthalen-1-yl) chroman-4-one, C24H23NO3
  65. Synthesis and crystal structure of (E)-1-(4-(((E)-3-(tert-butyl)-2-hydroxybenzylidene)amino)phenyl)ethan-1-one O-ethyl oxime, C21H26N2O2
  66. Crystal structure of the double salt bis(5-amino-1,2,4-triazol-4-ium-3-yl)methane hydrogen oxalate hemioxalate, C8H11N8O6
  67. Hydrothermal synthesis and crystal structure of catena-poly[diaqua-bis(μ2-4-[(4-pyridinylmethyl)amino]benzoato-κ2N:O)cobalt(II)]–1,2bi(4-pyridyl)ethene–water (1/1/1), C50H50N8O8Co
  68. Crystal structure of 3-(3-bromophenyl)-1′,3′-dimethyl-2′H,3H,4H-spiro[furo[3, 2-c]chromene-2,5′-pyrimidine]-2′,4,4′,6′(1′H,3′H) tetraone, C22H15BrN2O6
  69. The crystal structure of poly[aqua-(μ2-4,4′- bis(imidazolyl)biphenyl-κ2N:N′)-(μ2-3-nitrobenzene-1,2-dicarboxylato-κ2O:O′)]copper (II) hydrate, C26H21N5O8Cu
  70. The crystal structure of bis(4-(6-carboxy-8-ethyl-3-fluoro-5-oxo-5,8-dihydro-1,8-naphthyridin-2- yl)piperazin-1-ium) adipate tetrahydrate, C36H52F2N8O14
  71. Synthesis and crystal structure of poly[aqua(μ4-(1R,2S,4R)-4-hydroxy-1-((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)pyrrolidin-1-ium-2-carboxylate-κ4O:O′:O″:O‴)sodium(I)] monohydrate, C21H22NNaO12S
  72. Crystal structure of chlorido-(η6-toluene)(2,2′-bipyridine-κ2N,N′)ruthenium(II) hexafluorophosphate, C17H16ClN2RuPF6
  73. The crystal structure of (R)-6-hydroxy-8-methoxy-3-methylisochroman-1-one, C11H12O4
  74. Crystal structure of catena-poly[(5,5,7,12,12,14-hexamethyl -1,4,8,11-tetraazacyclotetradecane- κ4N,N′,Nʺ,N‴)nickel(II)-(μ2-perchlorato-κ2O:O′)] 3,5-dicarboxybenzoate – methanol (1/2), C27H49ClN4NiO12
  75. The crystal structure of 4-(chloromethyl)benzonitrile, C8H6ClN
  76. The crystal structure of dimethylammonium 8-[(7,9-dioxo-6,10-dioxaspiro[4.5]decan-8-ylidene)methyl]-9-oxo-6,10-dioxaspiro[4.5]dec-7-en-7-olate, C19H25NO8
  77. Crystal structure of (2R,3S,4S,5R,6S)-2-(acetoxymethyl)-6-((1-acetyl-5-bromo-4-chloro-1H-indol-3-yl)oxy)tetrahydro-2H-pyran-3,4,5-triyl triacetate hemihydrate C24H25BrClNO11
  78. The crystal structure of the co-crystal tetrakis[2-(tris(4-methoxyphenyl)stannyl)ethyl]silane – tetrahydrofuran – toluene – tetrahydrofurane (1/1/1), C103H116O13SiSn4
  79. Crystal structure of methyl 3-(1,3-dioxo-1H-benzo[de]isoquinolin-2(3H)-yl)propanoate, C16H13NO4
  80. Crystal structure of ethyl (Z)-3-amino-2-cyano-3-(2-oxo-2H-chromen-3-yl)acrylate, C15H12N2O4
  81. Crystal structure of methyl 2-(1,3-dioxo-1H-benzo[de]isoquinolin-2(3H)-yl)acetate, C15H11NO4
  82. Crystal structure of catena-poly[diaqua-bis(μ2-1,3-di(1H-imidazol-1-yl)propane-κ2N:N′)cobalt(II)] tetrafluoroterephthalate, C26H28N8O6F4Co
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