Home Crystal structure of 2-(2-hydroxy-5-nitrophenyl)-5-methyl-1,3-dioxane-5-carboxylic acid, C12H13N1O7
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Crystal structure of 2-(2-hydroxy-5-nitrophenyl)-5-methyl-1,3-dioxane-5-carboxylic acid, C12H13N1O7

  • Guo-Kai Jia ORCID logo and Xian-You Yuan EMAIL logo
Published/Copyright: May 24, 2022

Abstract

C12H13N1O7, monoclinic, P21/c (no. 14), a = 11.416(7) Å, b = 13.860(8) Å, c = 8.215(5) Å, β = 99.607(6)°, V = 1281.6(13) Å3, Z = 4, R gt (F) = 0.0433, wRref(F2) = 0.1274, T = 293(2) K.

CCDC No.: 2167119

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.34 × 0.28 × 0.22 mm
Wavelength: MoKα radiation (0.71073 Å)
μ: 0.12 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θmax, completeness: 27.5°, >99%
N(hkl)measured, N(hkl)unique, Rint: 14162, 2914, 0.025
Criterion for Iobs, N(hkl)gt: Iobs > 2 σ(Iobs), 2398
N(param)refined: 182
Programs: Bruker [1], Olex2 [2], SHELX [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
O1 0.58191 (13) 0.30364 (13) 0.7947 (2) 0.0993 (5)
O2 0.54109 (17) 0.44214 (14) 0.6758 (2) 0.1105 (6)
O3 0.11564 (10) 0.20329 (8) 0.31684 (14) 0.0647 (3)
H3 0.108172 0.145684 0.335370 0.097*
O4 0.31722 (8) 0.03745 (7) 0.35140 (11) 0.0458 (2)
O5 0.16717 (8) 0.04511 (6) 0.51097 (11) 0.0434 (2)
O6 0.12798 (11) −0.08050 (9) 0.04965 (13) 0.0709 (4)
H6 0.081009 −0.056507 −0.025933 0.106*
O7 0.01778 (9) −0.00054 (8) 0.20123 (12) 0.0571 (3)
N1 0.51989 (14) 0.35610 (14) 0.6939 (2) 0.0754 (5)
C1 0.41435 (13) 0.31572 (12) 0.59467 (18) 0.0558 (4)
C2 0.33457 (16) 0.37544 (11) 0.49927 (19) 0.0598 (4)
H2 0.348221 0.441528 0.496564 0.072*
C3 0.23443 (15) 0.33581 (11) 0.40811 (19) 0.0566 (4)
H3A 0.179024 0.375372 0.344279 0.068*
C4 0.21547 (12) 0.23684 (10) 0.41077 (16) 0.0476 (3)
C5 0.29839 (11) 0.17674 (10) 0.50589 (15) 0.0430 (3)
C6 0.39753 (12) 0.21735 (11) 0.59948 (17) 0.0496 (3)
H6A 0.452740 0.178638 0.665472 0.060*
C7 0.28636 (11) 0.06913 (10) 0.50181 (15) 0.0424 (3)
H7 0.339899 0.040476 0.594925 0.051*
C8 0.30764 (12) −0.06515 (10) 0.33490 (17) 0.0472 (3)
H8A 0.361023 −0.095886 0.424110 0.057*
H8B 0.330449 −0.084929 0.231327 0.057*
C9 0.18072 (12) −0.09671 (9) 0.33940 (16) 0.0452 (3)
C10 0.14764 (12) −0.05691 (9) 0.49816 (16) 0.0461 (3)
H10A 0.064641 −0.070576 0.500797 0.055*
H10B 0.194873 −0.088757 0.591978 0.055*
C11 0.10011 (12) −0.05399 (9) 0.19081 (16) 0.0451 (3)
C12 0.17036 (16) −0.20683 (10) 0.3366 (2) 0.0616 (4)
H12A 0.089801 −0.225016 0.340967 0.092*
H12B 0.221967 −0.233300 0.430164 0.092*
H12C 0.192799 −0.231242 0.236832 0.092*

Source of material

The mixture of 2,2–bis(hydroxymethyl)propionic acid (1.00 g, 7.455 mmol), 5-nitrosalicylaldehyde (1.49 g, 8.95 mmol), cyclohexane (15 mL), N,N-dimethylformamide (5 mL) and p-toluene sulfonic acid (0.01 g, 0.0058 mmol) were refuxed for 4 h. After the mixture was cooled, sodium bicarbonate (0.005 g, 0.0583 mmol) was added and stirred at room temperature for half an hour. The solvent was evaporated under reduced pressure and then ethyl acetate was added to dissolve the residue. Subsequently, the solution was washed with brine (15 ml × 2) and water (15 ml × 2), respectively. Then the organic layer was dried with anhydrous sodium sulfate, filtered. The product was recrystallized from ethyl acetate to afford colorless crystals (1.2342 g, 4.3576 mmol; yield 58.45%).

Experimental details

Hydrogen atoms were placed in their geometrically idealized positions and constrained to ride on their parent atoms.

Comment

Acetal compounds are widely used in organic syntheses as a protection of carbonyl groups or intermediates [4, 5]. In addition, this type of com-pounds may have insecticidal as well as anti-foaming properties [6]. The crystal structures of some similar 1,3-dioxanes have been reported [7], [8], [9], [10]. The new title compound was synthesized by 2,2-bis(hydroxymethyl)propionic acid, 5-nitrosalicylaldehyde and DMF, cyclohexane as solvent. P-toluenesulfonic acid as catalyst. The clear colourless crystal of the compound was obtained from ethyl acetate.

There is one molecule in the asymmetric unit of the title crystal structure (see the figure). All bond lengths and angles are in the expected ranges [8], [9], [10], [11]. Two intramolecular hydrogen bonds of different strengths connect the hydroxy group (O3) with the acceptor atoms O5 and O7.


Corresponding author: Xian-You Yuan, Department of Biology and Chemistry, Hunan University of Science and Engineering, Yongzhou, Hunan, 425199, P. R. China, E-mail:

Award Identifier / Grant number: 20XKY072

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was supported by the general scientific research project of Hunan University of Science and Engineering (NO. 20XKY072).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2022-04-18
Accepted: 2022-05-09
Published Online: 2022-05-24
Published in Print: 2022-08-26

© 2022 Guo-Kai Jia and Xian-You Yuan, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  82. Crystal structure of catena-poly[diaqua-bis(μ2-1,3-di(1H-imidazol-1-yl)propane-κ2N:N′)cobalt(II)] tetrafluoroterephthalate, C26H28N8O6F4Co
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