Abstract
The entomopathogenic fungus T011, parasitizing on nymph of Cicada, collected in the coffee garden in Dak Lak Province, Vietnam, was preliminarily morphologically identified as Isaria cicadae, belonged to order Hypocreales and family Clavicipitaceae. To ensure the authenticity of T011, phylogenetic analysis of the concatenated set of multiple genes including ITS, nrLSU, nrSSU, Rpb1, and Tef1 was applied to support the identification. Genomic DNA was isolated from dried sample T011. The PCR assay sequencing was applied to amplify ITS, nrLSU, nrSSU, Rpb1, and Tef1 gene. For phylogenetic analysis, the concatenated data of both target gens were constructed with MEGAX with a 1,000 replicate bootstrap based on the neighbor-joining, maximum likelihood, maximum parsimony method. As the result, the concatenated data containing 62 sequences belonged to order Hypocreales, families Clavicipitaceae, and 2 outgroup sequences belonged to order Hypocreales, genus Verticillium. The phylogenetic analysis results indicated that T011 was accepted at subclade Cordyceps and significantly formed the monophyletic group with referent Cordyceps cicadae (Telemorph of Isaria cicadae) with high bootstrap value. The phylogenetically analyzed result was strongly supported by our morphological analysis described as the Isaria cicadae. In summary, phylogenetic analyses based on the concatenated dataset were successfully applied to strengthen the identification of T011 as Isaria cicadae.
1 Introduction
Isaria cicadae Miq., Bull. Sci. phys. nat. néerl.: 86 (1838) (Mycobank: MB#204858), also known Cordyceps cicadae (Miq.) Massee (1895) (Mycobank: MB#311793), is the entomopathogenic fungi capable of parasitizing on cicada nymph, belongs to the order Hypocreales, and the family Clavicipitaceae [4,5]. C. cicadae usually distribute in many regions of the world with temperatures ranging from 18 to 24°C, relative humidity of >80°C, and grows vertically on the sunny slopes at an attitude of 700–950 m [3]. The distribution of C. cicadae is recorded in China (Province of Yunan, Sichuan, Guizhou, Jiangsu, Guangdong, Hunan, Hubei, etc.), Korea (Jeju Island), and Japan (South of Fukushima). Furthermore, C. cicadae is also seen in Thailand, North America, and Europe [3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24].
Due to their numerous bioactivities, I. cicadae, as well as C. cicadae, is considered the most valued traditional Chinese medicine. Its medicinal bioactive components, such as adenosine, cordycepin, ergosterol, etc., which have been used to relieve exhaustion remedy, treat numerous diseases, such as antitumor activities, and food source, have been recorded [3,19,20,21,22]. To obtain precious valued herbal medicine, the exploration and collection of local I. cicadae (C. cicadae) play an important role to apply for further medicinal applications. During our expedition to validate the fungal diversity in Ea Knop Town – Ea Kar District (Latitude: 12°34′26″N–13°02′09″N; Longitude: 108°22′08″E–108°43′2″E) located in Dak Lak Province, we collected the sample T011, parasitizing on the nymph of Cicada, which was classified and confirmed by the specialist on the entomologist, Faculty of Biotechnology, Ho Chi Minh City Open University, Ho Chi Minh City, Vietnam. In this paper, to ensure the origin and authenticity of T011 as I. cicadae, we conducted the morphology analysis and molecular phylogenetic analysis of the concatenated set genes including ITS, nrLSU, nrSSU, Rpb1, and Tef1.
2 Materials and methods
2.1 Sample collection
The specimen T011, parasitizing on the nymph of Cicada, was collected in the coffee garden in Ea Knop Town – Ea Kar District, Dak Lak Province on the morning of June 24, 2018. In the laboratory, the specimen was conditioned to be dried at 60°C and stored for further analysis.
2.2 Morphology analysis
Macroscopic characteristics of the fresh body were carefully observed in the many macroscopic characteristics. For the microscopic analysis, a bunch of conidiogenous cells was cut into small species, then, soaked in the water for about 3 min. A sample of the synemata containing the conidiogenous cells was immersed in distilled water for 3 min. Asexual spores were removed using a clean brush. The fertile part was then analyzed under a microscope. Conidia size was recorded. According to the identification of conidia, phialides, and colony coloration, the isolate cultures were grown on YMG media, composed of 4 g/L Yeast extract, 10 g/L Malt extract, 4 g/L Glucose, incubated at 20°C within a period of 20 days.
2.3 DNA extraction, PCR amplification, target gene sequencing
Genomic DNA was extracted from dried material by using the phenol/chloroform method (pH = 8). The dried material was added to a lysis buffer (2.0% SDS, Tris-HCl pH 8.0, 150 mM NaCl, 10 mM EDTA, 0.1 mg/mL Proteinase K). During the incubation at 65°C for overnight, it was mixed thoroughly by inverting the tube several times. Then, the supernatant was collected by centrifugation. About 700 μL of phenol/chloroform/isoamyl alcohol at a ratio of 25:24:1 was added and centrifuged. The upper solution was collected, precipitated with absolute ethanol, and washed with 70% ethanol. DNA concentration was identified by using OD260. Finally, isolated genomic DNA was stored in Tris-EDTA buffer at −20°C for further studies.
The primer pairs used to amplify ITS, nrLSU, nrSSU, Rpb1, and Tef1 region were shown in Table 1. The final volume for PCR was done in the total of 15 μL with the thermal program: 1 cycle for 95°C for 5 min; 40 cycles of 95°C for 30 s, X°C for 30 s, 72°C for 2 min; 1 cycle for 72°C for 5 min (Note: X°C is the annealing temperatures for each target gene, shown in Table 1). About 5 μL aliquots of amplification products were electrophoresed on a 2.0% agarose gel and visualized in a UV transilluminator. The amplified product was sequenced at Nam Khoa (Vietnam) company.
The primers’ sequences used in this study
| Target gene | Primer | Sequence (5′–3′) | T a (°C) | Reference |
|---|---|---|---|---|
| nrLSU | LR0R (F) | GTACCCGCTGAACTTAAGC | 55 | [18] |
| LR5 (R) | ATCCTGAGGGAAACTTC | |||
| nrSSU | NS1 (F) | GTAGTCATATGCTTGTCTC | 42.2 | [20] |
| NS4 (R) | CTTCCGTCAATTCCTTTAAG | |||
| ITS | ITS1F | CTTGGTCATTTAGAGGAAGTAA | 55 | [20] |
| ITS4 | TCCTCCGCTTATTGATATGC | |||
| Rpb1 | CRPB1 | CCWGGYTTYATCAAGAARGT | 46.3 | [13] |
| RPB1Cr | CCNGCDATNTCRTTRTCCATRTA | |||
| Tef1 | 983F | GCYCCYGGHCAYCGTGAYTTYAT | 55 | [2] |
| 2218R | ATGACACCRACRGCRACRGTYTG |
Note: F: forward primer; R: reverse primer; T a: annealing temperature.
2.4 Taxa and ITS, nrLSU, nrSSU, Rpb1, and Tef1 sequences collection, DNA proofreading, and phylogeny analysis
The data set of ITS, nrLSU, nrSSU, Rpb1, and Tef1 sequences were established by sequences downloaded from Genbank (NCBI) and based on the previous data published by Sung et al. (2007) [16]. The ITS, nrLSU, nrSSU, Rpb1, and Tef1 were noted with accession number, name of taxon, and locality. The multiple gene data used in the current study were established based on the combination of ITS, nrLSU, nrSSU, Rpb1, and Tef1 data. The amplified DNA sequences were proofread to remove ambiguous signals at both ends by different software, including Seaview 4.2.12 and Chromas Lite 2.1.1. The phylogenetic tree was constructed based on the neighbor-joining (NJ), maximum parsimony (MP), and maximum likelihood (ML) by using Molecular Evolutionary Genetics Analysis (MEGA) version X. Additionally, the best evolution model was predicted by using jModelTest.
3 Results
3.1 Morphology analysis
The sample of T011 was collected in the soil of the coffee garden on the morning of June 24, 2018. The synnemata were emerging from the soil, while the host was in the soil. Host: unidentified cicada nymph. Synnemata: presence, branching, 15–60 mm in length × 1.0–2.5 mm in diameter. Synnemata originated from the head of cicada nymphs with the thick layer of mycelia (hiding under the ground). Color: white to cream. Form: simple, erect, and distinguishing form fertile part and stipe. Fertile part: a dense white powdery covering on the surface due to the presence of a mass of conidia. Phialides: grouped inside the fertile part. Conidia: hyaline to white, cylindrical, 4.7–6.5 µm in length × 2.6–3.1 µm in diameter. Colonies from cultures on PDA: floccose and white, then becoming powdery by the conidiation of aerial hyphae. Conidia from the mycelia: smaller than those of from synnemata (Figure 1).

Morphology of Isaria cicadae: (a) Synemata forming from Cicadae, (b) Phialides, (c) conidia, (d) mycelia after 30 days on PDA media, (e) chain of conidia, and (f) conidia from mycelia. The bar scale indicated 10 µm.
3.2 Amplification of ITS, nrLSU, nrSSU, Rpb1, and Tef1 gene
Isolated genomic DNA was amplified with the described primers; then, electrophoresis on 2.0% agarose gel showed a significant and clear band of gene ITS: 700 bps, nrLSU: 950 bps, nrSSU: 1,102 bps, Rpb1: 803 bps, and Tef1: 1,020 bps. The PCR product was sequenced. Sequencing signals of both strands of both target genes were unique and good for reading (data not shown). According to BLAST results, the ITS, nrLSU, nrSSU, Rpb1, and Tef1 of T011 were similar to ITS, nrLSU, nrSSU, Rpb1, and Tef1 of C. cicadae (Telemorph of I. cicadae) (Table 2).
BLAST results of T011 specimen’s ITS, nrLSU, nrSSU, Rpb1, and Tef1
| Target gene | BLAST description | Total score | Per. Ident. | E-value | Accession |
|---|---|---|---|---|---|
| nrLSU-F | Cordyceps cicadae | 1,509 | 100.00 | 0.0 | MH879588 |
| nrLSU-R | Cordyceps cicadae | 1,509 | 99.64 | 0.0 | MH879588 |
| nrSSU-F | Cordyceps cicadae | 1,109 | 100.00 | 0.0 | MH879636 |
| nrSSU-R | Cordyceps cicadae | 1,048 | 99.65 | 0.0 | MH879636 |
| ITS-F | Cordyceps cicadae | 1,000 | 99.82 | 0.0 | MT555324 |
| ITS-R | Cordyceps cicadae | 1,444 | 99.82 | 0.0 | MN128643 |
| Tef1-F | Cordyceps cicadae | 1,729 | 99.17 | 0.0 | MH879662 |
| Tef1-R | Cordyceps cicadae | 1,676 | 98.33 | 0.0 | MN576985 |
| Rpb1-F | Cordyceps cicadae | 1,247 | 100.00 | 0.0 | MN913552 |
| Rpb1-F | Cordyceps cicadae | 1,280 | 99.57 | 0.0 | MN576876 |
Note: F: forward sequence; R: reverse sequence; Per. Ident.: percentage of identity.
3.3 The systematic concatenated ITS, nrLSU, nrSSU, Rpb1, and Tef1 dataset and phylogeny analysis
Total of 62 sequences of ITS, nrLSU, nrSSU, Rpb1, and Tef1 belonged to order Hypocreales, families Clavicipitaceae (served as referent data), and 2 sequences belonged to order Hypocreales, genus Verticillium (served as outgroup) were collected from Genbank and listed in Table 3 and T011 sequence. According to 62 sequences, they were divided into three families (Cordycipitaceae, Clavicipitaceae, Ophiocordycipitaceae), and each family was also divided intro genus, including Cordycipitaceae (genus: Cordyceps, Beauveria, Simplicillium, Lecanicillium), Clavicipitaceae (genus: Claviceps, Balansia, Pochonia, Conoideocrella, Metapochonia, Metarhizium), and Ophiocordycipitaceae (genus: Drechmeria, Ophiocordyceps). The best-fit model of DNA evolution for the analyses was obtained using the jModelTest2. Results are shown from General Time Reversible and Gramma distributed with invariant Sites (G + I) with the following parameters: parameters = 109, BIC = 42628.811, lnL = −20671.999, (+I) = 0.450, (+G) = 0.466, R = 2.186, f(A) = 0.246, f(T) = 0.221, f(G) = 0.257, f(C) = 0.276, r(AT) = 0.030, r(AC) = 0.040, r(AG) = 0.110, r(TA) = 0.030, r(TC) = 0.260, r(TG) = 0.040, r(CA) = 0.040, r(CT) = 0.220, r(CG) = 0.050, r(GA) = 0.100, r(GT) = 0.330, and r(GC) = 0.040. This model was used to construct phylogenetic trees using maximum likelihood from concatenated data set. Phylogenetic analysis was presented in Figure 2. As the results, the Clavicipitaceae formed a strong monophyletic group and separated from the out group. All the species in our dataset formed threes clades that were previously reported. According to T011, the T011 multiple gene sequences (ITS, nrLSU, nrSSU, Rpb1, and Tef1) formed a group with referent sequences of C. cicadae, Cordyceps sp., and Isaria sp., belonged to the clade Clavicipitaceae, subclade Cordyceps, with the high supported bootstrap values: 100, 100, 100 for NJ, MP, ML method (Figure 2, blanket). Therefore, the molecular identification indicated that T011 was identified as I. cicadae (anamorph of C. cicadae).
The concatenated dataset of ITS, nrLSU, nrSSU, Rpb1, and Tef1 genes used for the construction of phylogenetic trees
| No. | Taxon | Genus | Accession | ||||
|---|---|---|---|---|---|---|---|
| nrLSU | nrSSU | Rbp1 | Tef1 | ITS | |||
| 1 | Balansia pilulaeformis | Balansia | AF543788 | AF543764 | DQ522365 | DQ522319 | JN049816 |
| 2 | Beauveria caledonica | Beauveria | AF339520 | AF339570 | EF469086 | EF469057 | HQ880817 |
| 3 | Beauveria scarabaeidicola | Beauveria | AF339524 | AF339574 | DQ522380 | DQ522335 | JN049827 |
| 4 | Beauveria staphylinidicola | Beauveria | EF468836 | EF468981 | EF468881 | EF468776 | — |
| 5 | Claviceps fusiformis | Claviceps | U17402 | DQ522539 | DQ522366 | DQ522320 | JN049817 |
| 6 | Claviceps paspali | Claviceps | U47826 | U32401 | DQ522367 | DQ522321 | JN049818 |
| 7 | Claviceps purpurea | Claviceps | AF543789 | AF543765 | AY489648 | AF543778 | KJ529004 |
| 8 | Claviceps purpurea | Claviceps | EF469075 | EF469122 | EF469087 | EF469058 | KX977396 |
| 9 | Conoideocrella luteorostrata | Conoideocrella | EF468850 | EF468995 | EF468906 | EF468801 | JN049859 |
| 10 | Conoideocrella luteorostrata | Conoideocrella | EF468849 | EF468994 | EF468905 | EF468800 | JN049860 |
| 11 | Cordyceps cardinalis | Cordyceps sp. | AY184963 | AY184974 | EF469088 | EF469059 | — |
| 12 | Cordyceps cf. pruinosa | Cordyceps | EF468820 | EF468965 | EF468868 | EF468760 | — |
| 13 | Cordyceps cf. pruinosa | Cordyceps | EF468821 | EF468966 | EF468869 | EF468762 | — |
| 14 | Cordyceps cf. pruinosa | Cordyceps | EF468823 | EF468968 | EF468871 | EF468761 | — |
| 15 | Cordyceps cicadae | Cordyceps | MH879588 | MH879636 | MH885438 | MH879662 | MF803085 |
| 16 | Cordyceps kyusyuensis | Cordyceps | EF468813 | EF468960 | EF468863 | EF468754 | EF368021 |
| 17 | Cordyceps militaris | Cordyceps | AY184966 | AY184977 | DQ522377 | DQ522332 | JN049825 |
| 18 | Cordyceps pruinosa | Cordyceps | AY184968 | AY184979 | DQ522397 | DQ522351 | JN049826 |
| 19 | Cordyceps sp. | MT239107 | — | MT268242 | MT268246 | MT192488 | |
| 20 | Drechmeria balanoides | Drechmeria | AF339539 | AF339588 | DQ522388 | DQ522342 | EF546660 |
| 21 | Drechmeria zeospora | Drechmeria | AF339589 | — | EF469091 | EF469062 | — |
| 22 | Isaria sp. | MT239106 | — | MT268241 | MT268245 | MT192487 | |
| 23 | Isaria sp. | MT555409 | — | — | MT637810 | MT555325 | |
| 24 | Lecanicillium antillanum | Lecanicillium | AF339536 | AF339585 | DQ522396 | DQ522350 | MH861888 |
| 25 | Lecanicillium fusisporum | Lecanicillium | AF339549 | AF339598 | EF468889 | EF468783 | MH859538 |
| 26 | Lecanicillium psalliotae | Lecanicillium | AF339559 | AF339608 | EF468890 | EF468784 | N049846 |
| 27 | Lecanicillium tenuipes | Lecanicillium | AF339526 | AF339576 | DQ522387 | DQ522341 | JN036556 |
| 28 | Metarhizium guizhouense | Metarhizium | AF543787 | AF543763 | DQ522383 | AF543775 | JN049829 |
| 29 | Pochonia chlamydosporia | Pochonia | DQ518758 | DQ522544 | DQ522372 | DQ522327 | JN049821 |
| 30 | Metapochonia bulbillosa | Metapochonia | AF339542 | AF339591 | EF468902 | EF468796 | EU999952 |
| 31 | Metapochonia rubescens | Metapochonia | AF339566 | AF339615 | EF468903 | EF468797 | MH862138 |
| 32 | Metarhizium anisopliae | Metarhizium | AF339530 | AF339579 | DQ522399 | AF543774 | JN049834 |
| 33 | Metarhizium carneum | Metarhizium | EF468842 | EF468989 | EF468895 | EF468788 | AY624170 |
| 34 | Metarhizium carneum | Metarhizium | EF468843 | EF468988 | EF468894 | EF468789 | AY624171 |
| 35 | Metarhizium flavoviride | Metarhizium | AF339531 | AF339580 | DQ522400 | DQ522353 | AF138271 |
| 36 | Ophiocordyceps acicularis | Ophiocordyceps | EF468805 | EF468950 | EF468852 | EF468744 | JN049820 |
| 37 | Ophiocordyceps acicularis | Ophiocordyceps | EF468804 | EF468951 | EF468853 | EF468745 | |
| 38 | Ophiocordyceps aphodii | Ophiocordyceps | DQ518755 | DQ522541 | — | DQ522323 | — |
| 39 | Ophiocordyceps entomorrhiza | Ophiocordyceps | EF468809 | EF468954 | EF468857 | EF468749 | JN049850 |
| 40 | Ophiocordyceps melolonthae | Ophiocordyceps | DQ518762 | DQ522548 | DQ522376 | DQ522331 | KF937353 |
| 41 | Ophiocordyceps stylophora | Ophiocordyceps | EF468837 | EF468982 | EF468882 | EF468777 | — |
| 42 | Ophiocordyceps stylophora | Ophiocordyceps | DQ518766 | DQ522552 | DQ522382 | DQ522337 | JN049828 |
| 43 | Ophiocordyceps unilateralis | Ophiocordyceps | DQ518768 | DQ522554 | DQ522385 | DQ522339 | AY494596 |
| 44 | Ophiocordyceps variabilis | Ophiocordyceps | EF468839 | EF468985 | EF468885 | EF468779 | — |
| 45 | Ophiocordyceps variabilis | Ophiocordyceps | DQ518769 | DQ522555 | DQ522386 | — | — |
| 46 | Ophiocordyceps gracilis | Ophiocordyceps | EF468810 | EF468955 | EF468858 | EF468750 | HM119586 |
| 47 | Ophiocordyceps gracilis | Ophiocordyceps | EF468811 | EF468956 | EF468859 | EF468751 | JN049851 |
| 48 | Ophiocordyceps heteropoda | Ophiocordyceps | AY489722 | AY489690 | AY489651 | AY489617 | — |
| 49 | Ophiocordyceps heteropoda | Ophiocordyceps | EF468812 | EF468957 | EF468860 | EF468752 | JN049852 |
| 50 | Ophiocordyceps nigrella | Ophiocordyceps | EF468818 | EF468963 | EF468866 | EF468758 | JN049853 |
| 51 | Ophiocordyceps rhizoidea | Ophiocordyceps | EF468825 | EF468970 | EF468873 | EF467764 | JN049857 |
| 52 | Ophiocordyceps rhizoidea | Ophiocordyceps | EF468824 | EF468969 | EF468872 | EF468765 | GU723769 |
| 53 | Ophiocordyceps robertsii | Ophiocordyceps | EF468826 | — | — | EF468766 | AJ309335 |
| 54 | Ophiocordyceps sobolifera | Ophiocordyceps | KJ878898 | KJ878933 | KJ879013 | KJ878979 | KT281884 |
| 55 | Cordyceps ninchukispora | Cordyceps | EF468846 | EF468991 | EF468900 | EF468795 | AY245642 |
| 56 | Pochonia chlamydosporia | Pochonia | AF339544 | AF339593 | EF469098 | EF469069 | MH858871 |
| 57 | Simplicillium lamellicola | Simplicillium | AF339552 | AF339601 | DQ522404 | DQ522356 | MH854806 |
| 58 | Simplicillium lanosoniveum | Simplicillium | AF339554 | AF339603 | DQ522405 | DQ522357 | AJ292395 |
| 59 | Simplicillium lanosoniveum | Simplicillium | AF339553 | AF339602 | DQ522406 | DQ522358 | AJ292396 |
| 60 | Simplicillium obclavatum | Simplicillium | AF339517 | AF339567 | — | EF468798 | MH860859 |
| 61 | Tolypocladium longisegmentum | Tolypocladium | EF468816 | — | EF468864 | — | — |
| 62 | Tolypocladium fractum | Tolypocladium | DQ518759 | DQ522545 | DQ522373 | DQ522328 | — |
| 63 | Glomerella cingulata | Polycephalomyces | AF543786 | AF543762 | AY489659 | AF543773 | EU326204 |
| 64 | Glomerella cingulata | Polycephalomyces | U48428 | U48427 | DQ858454 | AF543772 | EU326192 |

Phylogenetic relationships among T011 and concatenated data set based on the analysis of ML method with bootstrap 1,000. The support values associated with each internal branch correspond to NJ, MP, ML method, indicating that T011 was closely related to C. cicadae (Teleomorph of I. cicadae).
4 Discussion
Morphology analysis indicated that T011 is Isaria cicadae, belonged to the family of Cordycipitaceae. Based on the morphology analysis, our specimen T011 shared the common features of Isaria cicadae Miq. Bull. Sci. phys. nat. Néerl.: 85 (1838) [17], including: (1) specimen grew in the soil, (2) parasite on the nymph of cicada, (3) synnemata were simple and erect with branching, white to cream, (4) colonies were floccose, white and turned into powdery with age, and (5) conidia: hyaline to white, cylindrical, large (T011: 4.7–6.5 × 2.6–3.1 mm, and referent: 3.5–8.0 × 1.5–3.5 µm).
To confirm the authenticity of T011 as Isaria cicadae, the construction of ITS, nrLSU, nrSSU, Rpb1, and Tef1-based phylogeny was performed. According to Mitchell et al. (1995), they suggested that molecular phylogenetic approaches to fungal evolution have proved valuable information toward the goals of understanding the relationship among the specific fungal groups [8]. Additionally, the use of fungal molecular data, including ITS, nrLSU, nrSSU, Rpb1, and Tef1, for the identification of fungi ushered in a new era of molecular phylogenetic sequence identification in kingdom Fungi [1,12]. In this study, the combination of ITS, nrLSU, nrSSU, Rpb1, and Tef1 genes were applied to strongly strengthen the identification of T011, which was classified as I. cicadae. According to phylogenetic analysis, phylogenetic analysis of ITS, nrLSU, nrSSU, Rpb1, and Tef1 yielded consistent topology in different taxa of Clavicipitaceae. The phylogenetic position of T011 was obtained and accepted at subclade level: Cordyceps. Notably, within this clade, the highly supported monophyletic group with referent C. cicadae was obtained with high bootstrap value (Bootstrap >95: NJ: 100; MP: 100; ML: 100) and separated this group from other referent taxon in subclade Cordyceps, such as C. ninchukispora, C. pruinosa, and C. kyusyuensis. Additionally, T011 formed the group with referent C. cicadae, Cordyceps sp., and Isaria sp. Among them, Cordyceps sp. and Isaria sp. were proposed using the ancient Chinese name “chanhua” (Cordyceps chanhua) [25]. Therefore, based on the phylogenetic analysis, the T011 was identified as the Isaria cicadae (anamorph of C. cicadae), which was strongly similar to Cordyceps chanhua. Therefore, we have successfully applied the phylogenetic analyses based on the concatenated dataset to strengthen the identification of T011, collected in the local coffee garden in Ea Knop Town – Ea Kar District, as I. cicadae (anamorph of C. cicadae).
5 Conclusion
We have successfully applied the phylogenetic analysis of multiple genes of ITS, nrLSU, nrSSU, Rpb1, and Tef1 to demimit sample T011, which was collected in Ea Knop Town – Ea Kar District, Đak Lak Province, was strongly supported as Isaria cicadae (anamorph of C. cicadae), which was similar to our preliminary identification. This is the first molecular record of Isaria cicadae in Vietnam.
Acknowledgments
We express our special thanks to National Foundation For Science and Technology Development (NAFOSTED), Vietnam, and Ho Chi Minh City Open University for the genuine support throughout this research work.
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Funding information: The research was funded by National Foundation For Science and Technology Development (NAFOSTED): 106-NN.06.2015.44, Vietnam, and Ho Chi Minh City Open University under the grant number E2019.06.3.
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Conflict of interest: The authors state no conflict of interest.
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Data availability statement: The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.
References
[1] Bruns TD, White TJ, Taylor JW. Fungal molecular systematics. Annu Rev Ecol Evol Syst. 1991;22:525–64.10.1146/annurev.es.22.110191.002521Search in Google Scholar
[2] Castlebury LA, Rossman AY, Sung G-H, Hyten AS, Spatafora JW. Multigene phylogeny reveals new lineage for Stachybotrys chartarum, the indoor air fungus. Mycol Res. 2004;108:864–72.10.1017/S0953756204000607Search in Google Scholar
[3] Hsu JH, Jhou BY, Yeh SH, Chen YI, Chen CC. Healthcare functions of Cordyceps cicadae. J Nutr Food Sci. 2015;5:432. 10.4172/2155-9600.1000432.Search in Google Scholar
[4] Kobayasi Y, Shimizu D. Monographic studies of Cordyceps 2: group parasitic on Cicadae. Bull Natl Sci Mus. 1963;6:286–314.Search in Google Scholar
[5] Li L, Zhang T, Li C, Xie L, Li N, Hou T, et al. Potential therapeutic effects of Cordyceps cicadae and Paecilomyces cicadae on adenine-induced chronic renal failure in rats and their phytochemical analysis. Drug Design Dev Ther. 2018;13:103–17. 10.2147/DDDT.S180543.Search in Google Scholar
[6] Liu T, Liu Z, Yao X, Huang Y, Qu Q, Shi X, et al. Identification of cordycepin biosynthesis-related genes through de novo transcriptome assembly and analysis in Cordyceps cicadae. R Soc Open Sci. 2018;5(12):181247. 10.1098/rsos.181247.Search in Google Scholar
[7] Luangsa-ard JJ, Hywel-Jones NL, Manoch L, Samson RA. On the relationships of Paecilomyces sect. Isarioidea species. Mycol Res. 2005;109(Pt 5):581–9. 10.1017/s0953756205002741.Search in Google Scholar
[8] Mitchell JI, Roberts PJ, Moss ST. Sequence or structure: a short review on the application of nucleic acid sequence information to fungal taxonomy. Mycologist. 1995;9:67–76. 10.1016/S0269-915X(09)80212-7.Search in Google Scholar
[9] Olatunji OJ, Feng Y, Olatunji OO, Tang J, Ouyang Z, Su Z. Neuroprotective effects of adenosine isolated from Isaria cicadae against oxidative and ER stress damages induced by glutamate in PC12 cells. Environ Toxicol Pharmacol. 2016;44:53–61. 10.1016/j.etap.2016.02.009.Search in Google Scholar PubMed
[10] Paterson RR. Cordyceps: a traditional Chinese medicine and another fungal therapeutic biofactory? Phytochemistry. 2008;69(7):1469–95. 10.1016/j.phytochem.2008.01.027.Search in Google Scholar PubMed PubMed Central
[11] Prayook S, Siripuk S, Panida L. First report of Cordyceps sp. isolated from Cicada in Northeastern Thailand and their characterizations. J Biol Sci. 2013;13:587–95. 10.3923/jbs.2013.587.595.Search in Google Scholar
[12] Raja HA, Miller AN, Pearce CJ, Oberlies NH. Fungal identification using molecular tools: a primer for the natural products research community. J Nat Products. 2017;80(3):756–70. 10.1021/acs.jnatprod.6b01085.Search in Google Scholar
[13] Rehner S. Primers for elongation factor 1-a (EF1-a). Beltsville, MD, USA: Insect Biocontrol Laboratory USDA, ARS, PSI; 2001. p. 4. 1p. Available online: http://ocid.NACSE.ORG/research/deephyphae/EF1primer.pdf.Search in Google Scholar
[14] Shi Z, Pan HJ, Fan LF. Advances in research of polysaccharides in Cordyceps species. Food Technol Biotechnol. 2009;47(3):304–12.Search in Google Scholar
[15] Sun YF, Sun Y, Wang ZA, Han RL, Lu HF, Zhang JL, et al. Isaria Cicadae conidia possess antiproliferative and inducing apoptosis properties in gynaecological carcinoma cells. Mycology. 2017;8(4):327–34. 10.1080/21501203.2017.1386243.Search in Google Scholar
[16] Sung GH, Hywel-Jones NL, Sung JM, Luangsa-Ard JJ, Shrestha B, Spatafora JW. Phylogenetic classification of Cordyceps and the clavicipitaceous fungi. Stud Mycol. 2007;57:5–59. 10.3114/sim.2007.57.01.Search in Google Scholar
[17] Vilgalys R, Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol. 1990;172:4238–46. 10.1128/jb.172.8.4238-4246.1990.Search in Google Scholar
[18] Vilgalys R, Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol. 1990;172:4238–46. 10.1128/jb.172.8.4238-4246.1990.Search in Google Scholar
[19] Weng SC, Chou CJ, Lin LC, Tsai WJ, Kuo YC. Immunomodulatory functions of extracts from the Chinese medicinal fungus Isaria cicadae. J Ethnopharmacol. 2002;83:79–85. 10.1016/s0378-8741(02)00212-x.Search in Google Scholar
[20] White TJ, Bruns T, Lee S, Taylor J. PCR protocols. San Diego: Academic Press, Inc; 1990. p. 315–22. 10.1016/B978-0-12-372180-8.50042-1.Search in Google Scholar
[21] Xiao JH, Zhong JJ. Secondary metabolites from Cordyceps species and their antitumor activity studies. Recent Pat Biotechnol. 2007;1(2):123–37. 10.2174/187220807780809454.Search in Google Scholar PubMed
[22] Xie H, Li X, Chen Y, Lang M, Shen Z, Shi L. Ethanolic extract of Cordyceps cicadae exerts antitumor effect on human gastric cancer SGC-7901 cells by inducing apoptosis, cell cycle arrest and endoplasmic reticulum stress. J Ethnopharmacol. 2019;231:230–40. 10.1016/j.jep.2018.11.028.Search in Google Scholar PubMed
[23] Zeng WB, Yu H, Ge F, Yang JY, Chen ZH, Wang YB, et al. Distribution of nucleosides in populations of Cordyceps cicadae. Molecules. 2014;19(5):6123–41. 10.3390/molecules19056123.Search in Google Scholar PubMed PubMed Central
[24] Zhang CB, Wang YL, Yi M, Dong DC, Su XQ. Identification and phylogenetic analysis of the strain isolated from infected Platylomia pieli in Mopan Mountain, Tianwang Town, Jiangsu province. Guangdong Agric Sci. 2013;40:152–4.Search in Google Scholar
[25] Li ZZ, Luan FG, Hywel-Jones Nigel L, Zhang SL, Chen MJ, Huang B, et al. Biodiversity of cordycipitoid fungi associated with Isaria cicadae Miquel II: teleomorph discovery and nomenclature of chanhua, an important medicinal fungus in China. Mycosystema. 2021;40(2):1–12.Search in Google Scholar
© 2021 Thuan Duc Lao et al., published by De Gruyter
This work is licensed under the Creative Commons Attribution 4.0 International License.
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- Invasive ductal carcinoma and small lymphocytic lymphoma/chronic lymphocytic leukemia manifesting as a collision breast tumor: A case report and literature review
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- Small cell neuroendocrine carcinoma expressing alpha fetoprotein in the endometrium
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- ITGB5 mutation discovered in a Chinese family with blepharophimosis-ptosis-epicanthus inversus syndrome
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Articles in the same Issue
- Biomedical Sciences
- Research progress on the mechanism of orexin in pain regulation in different brain regions
- Adriamycin-resistant cells are significantly less fit than adriamycin-sensitive cells in cervical cancer
- Exogenous spermidine affects polyamine metabolism in the mouse hypothalamus
- Iris metastasis of diffuse large B-cell lymphoma misdiagnosed as primary angle-closure glaucoma: A case report and review of the literature
- LncRNA PVT1 promotes cervical cancer progression by sponging miR-503 to upregulate ARL2 expression
- Two new inflammatory markers related to the CURB-65 score for disease severity in patients with community-acquired pneumonia: The hypersensitive C-reactive protein to albumin ratio and fibrinogen to albumin ratio
- Circ_0091579 enhances the malignancy of hepatocellular carcinoma via miR-1287/PDK2 axis
- Silencing XIST mitigated lipopolysaccharide (LPS)-induced inflammatory injury in human lung fibroblast WI-38 cells through modulating miR-30b-5p/CCL16 axis and TLR4/NF-κB signaling pathway
- Protocatechuic acid attenuates cerebral aneurysm formation and progression by inhibiting TNF-alpha/Nrf-2/NF-kB-mediated inflammatory mechanisms in experimental rats
- ABCB1 polymorphism in clopidogrel-treated Montenegrin patients
- Metabolic profiling of fatty acids in Tripterygium wilfordii multiglucoside- and triptolide-induced liver-injured rats
- miR-338-3p inhibits cell growth, invasion, and EMT process in neuroblastoma through targeting MMP-2
- Verification of neuroprotective effects of alpha-lipoic acid on chronic neuropathic pain in a chronic constriction injury rat model
- Circ_WWC3 overexpression decelerates the progression of osteosarcoma by regulating miR-421/PDE7B axis
- Knockdown of TUG1 rescues cardiomyocyte hypertrophy through targeting the miR-497/MEF2C axis
- MiR-146b-3p protects against AR42J cell injury in cerulein-induced acute pancreatitis model through targeting Anxa2
- miR-299-3p suppresses cell progression and induces apoptosis by downregulating PAX3 in gastric cancer
- Diabetes and COVID-19
- Discovery of novel potential KIT inhibitors for the treatment of gastrointestinal stromal tumor
- TEAD4 is a novel independent predictor of prognosis in LGG patients with IDH mutation
- circTLK1 facilitates the proliferation and metastasis of renal cell carcinoma by regulating miR-495-3p/CBL axis
- microRNA-9-5p protects liver sinusoidal endothelial cell against oxygen glucose deprivation/reperfusion injury
- Long noncoding RNA TUG1 regulates degradation of chondrocyte extracellular matrix via miR-320c/MMP-13 axis in osteoarthritis
- Duodenal adenocarcinoma with skin metastasis as initial manifestation: A case report
- Effects of Loofah cylindrica extract on learning and memory ability, brain tissue morphology, and immune function of aging mice
- Recombinant Bacteroides fragilis enterotoxin-1 (rBFT-1) promotes proliferation of colorectal cancer via CCL3-related molecular pathways
- Blocking circ_UBR4 suppressed proliferation, migration, and cell cycle progression of human vascular smooth muscle cells in atherosclerosis
- Gene therapy in PIDs, hemoglobin, ocular, neurodegenerative, and hemophilia B disorders
- Downregulation of circ_0037655 impedes glioma formation and metastasis via the regulation of miR-1229-3p/ITGB8 axis
- Vitamin D deficiency and cardiovascular risk in type 2 diabetes population
- Circ_0013359 facilitates the tumorigenicity of melanoma by regulating miR-136-5p/RAB9A axis
- Mechanisms of circular RNA circ_0066147 on pancreatic cancer progression
- lncRNA myocardial infarction-associated transcript (MIAT) knockdown alleviates LPS-induced chondrocytes inflammatory injury via regulating miR-488-3p/sex determining region Y-related HMG-box 11 (SOX11) axis
- Identification of circRNA circ-CSPP1 as a potent driver of colorectal cancer by directly targeting the miR-431/LASP1 axis
- Hyperhomocysteinemia exacerbates ischemia-reperfusion injury-induced acute kidney injury by mediating oxidative stress, DNA damage, JNK pathway, and apoptosis
- Potential prognostic markers and significant lncRNA–mRNA co-expression pairs in laryngeal squamous cell carcinoma
- Gamma irradiation-mediated inactivation of enveloped viruses with conservation of genome integrity: Potential application for SARS-CoV-2 inactivated vaccine development
- ADHFE1 is a correlative factor of patient survival in cancer
- The association of transcription factor Prox1 with the proliferation, migration, and invasion of lung cancer
- Is there a relationship between the prevalence of autoimmune thyroid disease and diabetic kidney disease?
- Immunoregulatory function of Dictyophora echinovolvata spore polysaccharides in immunocompromised mice induced by cyclophosphamide
- T cell epitopes of SARS-CoV-2 spike protein and conserved surface protein of Plasmodium malariae share sequence homology
- Anti-obesity effect and mechanism of mesenchymal stem cells influence on obese mice
- Long noncoding RNA HULC contributes to paclitaxel resistance in ovarian cancer via miR-137/ITGB8 axis
- Glucocorticoids protect HEI-OC1 cells from tunicamycin-induced cell damage via inhibiting endoplasmic reticulum stress
- Prognostic value of the neutrophil-to-lymphocyte ratio in acute organophosphorus pesticide poisoning
- Gastroprotective effects of diosgenin against HCl/ethanol-induced gastric mucosal injury through suppression of NF-κβ and myeloperoxidase activities
- Silencing of LINC00707 suppresses cell proliferation, migration, and invasion of osteosarcoma cells by modulating miR-338-3p/AHSA1 axis
- Successful extracorporeal membrane oxygenation resuscitation of patient with cardiogenic shock induced by phaeochromocytoma crisis mimicking hyperthyroidism: A case report
- Effects of miR-185-5p on replication of hepatitis C virus
- Lidocaine has antitumor effect on hepatocellular carcinoma via the circ_DYNC1H1/miR-520a-3p/USP14 axis
- Primary localized cutaneous nodular amyloidosis presenting as lymphatic malformation: A case report
- Multimodal magnetic resonance imaging analysis in the characteristics of Wilson’s disease: A case report and literature review
- Therapeutic potential of anticoagulant therapy in association with cytokine storm inhibition in severe cases of COVID-19: A case report
- Neoadjuvant immunotherapy combined with chemotherapy for locally advanced squamous cell lung carcinoma: A case report and literature review
- Rufinamide (RUF) suppresses inflammation and maintains the integrity of the blood–brain barrier during kainic acid-induced brain damage
- Inhibition of ADAM10 ameliorates doxorubicin-induced cardiac remodeling by suppressing N-cadherin cleavage
- Invasive ductal carcinoma and small lymphocytic lymphoma/chronic lymphocytic leukemia manifesting as a collision breast tumor: A case report and literature review
- Clonal diversity of the B cell receptor repertoire in patients with coronary in-stent restenosis and type 2 diabetes
- CTLA-4 promotes lymphoma progression through tumor stem cell enrichment and immunosuppression
- WDR74 promotes proliferation and metastasis in colorectal cancer cells through regulating the Wnt/β-catenin signaling pathway
- Down-regulation of IGHG1 enhances Protoporphyrin IX accumulation and inhibits hemin biosynthesis in colorectal cancer by suppressing the MEK-FECH axis
- Curcumin suppresses the progression of gastric cancer by regulating circ_0056618/miR-194-5p axis
- Scutellarin-induced A549 cell apoptosis depends on activation of the transforming growth factor-β1/smad2/ROS/caspase-3 pathway
- lncRNA NEAT1 regulates CYP1A2 and influences steroid-induced necrosis
- A two-microRNA signature predicts the progression of male thyroid cancer
- Isolation of microglia from retinas of chronic ocular hypertensive rats
- Changes of immune cells in patients with hepatocellular carcinoma treated by radiofrequency ablation and hepatectomy, a pilot study
- Calcineurin Aβ gene knockdown inhibits transient outward potassium current ion channel remodeling in hypertrophic ventricular myocyte
- Aberrant expression of PI3K/AKT signaling is involved in apoptosis resistance of hepatocellular carcinoma
- Clinical significance of activated Wnt/β-catenin signaling in apoptosis inhibition of oral cancer
- circ_CHFR regulates ox-LDL-mediated cell proliferation, apoptosis, and EndoMT by miR-15a-5p/EGFR axis in human brain microvessel endothelial cells
- Resveratrol pretreatment mitigates LPS-induced acute lung injury by regulating conventional dendritic cells’ maturation and function
- Ubiquitin-conjugating enzyme E2T promotes tumor stem cell characteristics and migration of cervical cancer cells by regulating the GRP78/FAK pathway
- Carriage of HLA-DRB1*11 and 1*12 alleles and risk factors in patients with breast cancer in Burkina Faso
- Protective effect of Lactobacillus-containing probiotics on intestinal mucosa of rats experiencing traumatic hemorrhagic shock
- Glucocorticoids induce osteonecrosis of the femoral head through the Hippo signaling pathway
- Endothelial cell-derived SSAO can increase MLC20 phosphorylation in VSMCs
- Downregulation of STOX1 is a novel prognostic biomarker for glioma patients
- miR-378a-3p regulates glioma cell chemosensitivity to cisplatin through IGF1R
- The molecular mechanisms underlying arecoline-induced cardiac fibrosis in rats
- TGF-β1-overexpressing mesenchymal stem cells reciprocally regulate Th17/Treg cells by regulating the expression of IFN-γ
- The influence of MTHFR genetic polymorphisms on methotrexate therapy in pediatric acute lymphoblastic leukemia
- Red blood cell distribution width-standard deviation but not red blood cell distribution width-coefficient of variation as a potential index for the diagnosis of iron-deficiency anemia in mid-pregnancy women
- Small cell neuroendocrine carcinoma expressing alpha fetoprotein in the endometrium
- Superoxide dismutase and the sigma1 receptor as key elements of the antioxidant system in human gastrointestinal tract cancers
- Molecular characterization and phylogenetic studies of Echinococcus granulosus and Taenia multiceps coenurus cysts in slaughtered sheep in Saudi Arabia
- ITGB5 mutation discovered in a Chinese family with blepharophimosis-ptosis-epicanthus inversus syndrome
- ACTB and GAPDH appear at multiple SDS-PAGE positions, thus not suitable as reference genes for determining protein loading in techniques like Western blotting
- Facilitation of mouse skin-derived precursor growth and yield by optimizing plating density
- 3,4-Dihydroxyphenylethanol ameliorates lipopolysaccharide-induced septic cardiac injury in a murine model
- Downregulation of PITX2 inhibits the proliferation and migration of liver cancer cells and induces cell apoptosis
- Expression of CDK9 in endometrial cancer tissues and its effect on the proliferation of HEC-1B
- Novel predictor of the occurrence of DKA in T1DM patients without infection: A combination of neutrophil/lymphocyte ratio and white blood cells
- Investigation of molecular regulation mechanism under the pathophysiology of subarachnoid hemorrhage
- miR-25-3p protects renal tubular epithelial cells from apoptosis induced by renal IRI by targeting DKK3
- Bioengineering and Biotechnology
- Green fabrication of Co and Co3O4 nanoparticles and their biomedical applications: A review
- Agriculture
- Effects of inorganic and organic selenium sources on the growth performance of broilers in China: A meta-analysis
- Crop-livestock integration practices, knowledge, and attitudes among smallholder farmers: Hedging against climate change-induced shocks in semi-arid Zimbabwe
- Food Science and Nutrition
- Effect of food processing on the antioxidant activity of flavones from Polygonatum odoratum (Mill.) Druce
- Vitamin D and iodine status was associated with the risk and complication of type 2 diabetes mellitus in China
- Diversity of microbiota in Slovak summer ewes’ cheese “Bryndza”
- Comparison between voltammetric detection methods for abalone-flavoring liquid
- Composition of low-molecular-weight glutenin subunits in common wheat (Triticum aestivum L.) and their effects on the rheological properties of dough
- Application of culture, PCR, and PacBio sequencing for determination of microbial composition of milk from subclinical mastitis dairy cows of smallholder farms
- Investigating microplastics and potentially toxic elements contamination in canned Tuna, Salmon, and Sardine fishes from Taif markets, KSA
- From bench to bar side: Evaluating the red wine storage lesion
- Establishment of an iodine model for prevention of iodine-excess-induced thyroid dysfunction in pregnant women
- Plant Sciences
- Characterization of GMPP from Dendrobium huoshanense yielding GDP-D-mannose
- Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia
- Identification of leaf rust resistance genes Lr34 and Lr46 in common wheat (Triticum aestivum L. ssp. aestivum) lines of different origin using multiplex PCR
- Investigation of bioactivities of Taxus chinensis, Taxus cuspidata, and Taxus × media by gas chromatography-mass spectrometry
- Morphological structures and histochemistry of roots and shoots in Myricaria laxiflora (Tamaricaceae)
- Transcriptome analysis of resistance mechanism to potato wart disease
- In silico analysis of glycosyltransferase 2 family genes in duckweed (Spirodela polyrhiza) and its role in salt stress tolerance
- Comparative study on growth traits and ions regulation of zoysiagrasses under varied salinity treatments
- Role of MS1 homolog Ntms1 gene of tobacco infertility
- Biological characteristics and fungicide sensitivity of Pyricularia variabilis
- In silico/computational analysis of mevalonate pyrophosphate decarboxylase gene families in Campanulids
- Identification of novel drought-responsive miRNA regulatory network of drought stress response in common vetch (Vicia sativa)
- How photoautotrophy, photomixotrophy, and ventilation affect the stomata and fluorescence emission of pistachios rootstock?
- Apoplastic histochemical features of plant root walls that may facilitate ion uptake and retention
- Ecology and Environmental Sciences
- The impact of sewage sludge on the fungal communities in the rhizosphere and roots of barley and on barley yield
- Domestication of wild animals may provide a springboard for rapid variation of coronavirus
- Response of benthic invertebrate assemblages to seasonal and habitat condition in the Wewe River, Ashanti region (Ghana)
- Molecular record for the first authentication of Isaria cicadae from Vietnam
- Twig biomass allocation of Betula platyphylla in different habitats in Wudalianchi Volcano, northeast China
- Animal Sciences
- Supplementation of probiotics in water beneficial growth performance, carcass traits, immune function, and antioxidant capacity in broiler chickens
- Predators of the giant pine scale, Marchalina hellenica (Gennadius 1883; Hemiptera: Marchalinidae), out of its natural range in Turkey
- Honey in wound healing: An updated review
- NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block
- Radiotherapy for the treatment of pulmonary hydatidosis in sheep
- Retraction
- Retraction of “Long non-coding RNA TUG1 knockdown hinders the tumorigenesis of multiple myeloma by regulating microRNA-34a-5p/NOTCH1 signaling pathway”
- Special Issue on Reuse of Agro-Industrial By-Products
- An effect of positional isomerism of benzoic acid derivatives on antibacterial activity against Escherichia coli
- Special Issue on Computing and Artificial Techniques for Life Science Applications - Part II
- Relationship of Gensini score with retinal vessel diameter and arteriovenous ratio in senile CHD
- Effects of different enantiomers of amlodipine on lipid profiles and vasomotor factors in atherosclerotic rabbits
- Establishment of the New Zealand white rabbit animal model of fatty keratopathy associated with corneal neovascularization
- lncRNA MALAT1/miR-143 axis is a potential biomarker for in-stent restenosis and is involved in the multiplication of vascular smooth muscle cells