Home Crystal structure of bis[4-(3-carboxy-6-fluoro-1-(4-fluorophenyl)-4-oxo-1,4-dihydroquinolin-7-yl)piperazin-1-ium] benzene-1,4-dicarboxylate (C20H18F2N3O3)2(C8H4O4), C48H40F4N6O10
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Crystal structure of bis[4-(3-carboxy-6-fluoro-1-(4-fluorophenyl)-4-oxo-1,4-dihydroquinolin-7-yl)piperazin-1-ium] benzene-1,4-dicarboxylate (C20H18F2N3O3)2(C8H4O4), C48H40F4N6O10

  • Zhe An , Ling Zhu and Xin-Hua Zhao EMAIL logo
Published/Copyright: January 20, 2016

Abstract

C48H40N6O10F4, monoclinic, C2/ca = 29.701(2) Å, b = 11.1940(8) Å, c = 13.1275(9) Å, β = 97.393(6)°, V = 4328.2(5) Å3, Z = 4, Rgt(F) = 0.0462, wRref(F2) = 0.1337, T = 296 K.

CCDC no.:: 1442758

The crystal structure is shown in the figure, Tables 13 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colorless, block, size 0.15×0.20×0.20 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.13 cm−1
Diffractometer, scan mode:CCD area detector, φ and ω scans
2θmax:50°
N(hkl)measured, N(hkl)unique:16056, 3811
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2440
N(param)refined:321
Programs:SHELX [2]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomSitexyzUiso
H(5)8f0.14390.72850.85650.054
H(6A)8f0.08840.86940.82040.061
H(6B)8f0.13560.92260.80190.061
H(8)8f0.22250.74701.18360.055
H(11)8f0.23550.40480.87500.058
H(13)8f0.19520.67250.71770.064
H(15)8f0.14870.64400.56360.075
H(16A)8f0.10991.11600.82540.068
H(16B)8f0.07601.05390.73980.068
H(17)8f0.13880.38820.83620.069
H(18A)8f0.04281.08771.02470.082
H(18B)8f0.09001.13480.99940.082
H(19)8f0.09310.25800.68000.082
H(20A)8f0.10000.94991.08400.079
H(20B)8f0.06520.89020.99880.079
H(24)8f0.00380.31810.40310.079
H(25)8f0.00600.52380.40290.084
H(1)8f0.293(1)0.433(3)1.174(3)0.12(1)
H(1M)8f0.033(1)1.150(3)0.855(2)0.075(8)
H(2M)8f0.022(1)1.003(3)0.855(2)0.11(1)
Table 3

Atomic displacement parameters (Å2).

AtomSitexyzU11U22U33U12U13U23
C(1)8f0.19156(8)0.6441(2)0.9539(2)0.044(1)0.043(1)0.038(1)−0.002(1)0.004(1)0.002(1)
C(2)8f0.24802(8)0.5542(2)1.0889(2)0.044(1)0.046(2)0.045(1)−0.005(1)0.004(1)0.011(1)
C(3)8f0.21565(8)0.6477(2)1.0528(2)0.045(1)0.043(1)0.038(1)−0.006(1)0.004(1)0.005(1)
C(4)8f0.25530(8)0.4650(2)1.0153(2)0.046(1)0.042(1)0.048(1)−0.000(1)0.002(1)0.007(1)
C(5)8f0.16040(8)0.7337(2)0.9215(2)0.046(1)0.050(2)0.037(1)0.003(1)−0.000(1)0.001(1)
C(6)8f0.10990(9)0.9332(2)0.8398(2)0.053(2)0.060(2)0.040(1)0.010(1)0.008(1)0.002(1)
C(7)8f0.17117(8)0.5328(2)0.7910(2)0.046(1)0.049(2)0.039(1)0.008(1)0.002(1)−0.005(1)
C(8)8f0.20756(8)0.7435(2)1.1169(2)0.053(2)0.048(2)0.034(1)−0.006(1)−0.000(1)0.003(1)
C(9)8f0.15343(8)0.8302(2)0.9834(2)0.047(1)0.045(2)0.040(1)0.000(1)0.008(1)0.001(1)
C(10)8f0.17823(8)0.8304(2)1.0823(2)0.057(2)0.045(2)0.037(1)−0.001(1)0.006(1)−0.007(1)
C(11)8f0.23054(8)0.4657(2)0.9204(2)0.049(2)0.041(1)0.055(1)0.004(1)0.004(1)−0.000(1)
C(12)8f0.28807(9)0.3662(2)1.0409(2)0.049(2)0.048(2)0.068(2)−0.001(1)0.000(1)0.008(1)
C(13)8f0.17452(8)0.6096(2)0.7104(2)0.052(2)0.058(2)0.049(1)0.001(1)0.004(1)−0.002(1)
C(14)8f0.1177(1)0.4988(3)0.6105(2)0.051(2)0.094(2)0.047(2)0.009(2)−0.006(1)−0.016(2)
C(15)8f0.14711(9)0.5926(3)0.6187(2)0.063(2)0.079(2)0.044(1)0.013(2)0.004(1)0.004(1)
C(16)8f0.08758(9)1.0527(2)0.8123(2)0.059(2)0.060(2)0.053(1)0.007(1)0.010(1)0.010(1)
C(17)8f0.14092(9)0.4392(2)0.7811(2)0.059(2)0.060(2)0.052(2)−0.007(1)0.003(1)−0.003(1)
C(18)8f0.0673(1)1.0727(3)0.9843(2)0.077(2)0.069(2)0.061(2)0.018(2)0.013(1)−0.009(1)
C(19)8f0.11360(9)0.4212(3)0.6885(2)0.053(2)0.077(2)0.073(2)−0.012(2)0.002(1)−0.018(2)
C(20)8f0.0883(1)0.9517(3)1.0115(2)0.071(2)0.079(2)0.049(1)0.018(2)0.018(1)0.005(1)
C(21)4e00.5446(3)0.250.053(2)0.044(2)0.074(3)00.003(2)0
C(22)4e00.2969(3)0.250.055(2)0.046(2)0.058(2)00.004(2)0
C(23)4e00.1632(3)0.250.056(2)0.051(2)0.066(2)00.010(2)0
C(24)8f0.0026(1)0.3593(2)0.3412(2)0.086(2)0.053(2)0.058(2)−0.002(2)0.003(1)0.001(1)
C(25)8f0.0033(1)0.4824(3)0.3410(2)0.088(2)0.057(2)0.064(2)−0.009(2)0.002(2)−0.011(1)
C(26)4e00.6794(4)0.250.080(3)0.054(3)0.104(4)00.030(3)0
F(1)8f0.17314(5)0.9258(1)1.1440(1)0.090(1)0.060(1)0.0457(8)0.0112(8)−0.0014(7)−0.0143(7)
F(2)8f0.09118(6)0.4814(2)0.5194(1)0.082(1)0.156(2)0.062(1)−0.001(1)−0.0241(9)−0.026(1)
N(1)8f0.19934(7)0.5493(2)0.8886(1)0.051(1)0.043(1)0.041(1)0.005(1)−0.0007(9)−0.0022(9)
N(2)8f0.12528(7)0.9269(2)0.9502(1)0.057(1)0.051(1)0.036(1)0.013(1)0.0082(9)0.0017(9)
N(3)8f0.04981(8)1.0741(2)0.8737(2)0.058(1)0.047(1)0.057(1)0.011(1)0.007(1)0.000(1)
O(1)8f−0.00709(7)0.1107(2)0.3310(1)0.089(1)0.053(1)0.078(1)0.006(1)0.027(1)0.010(1)
O(2)8f0.0001(1)0.7313(2)0.3328(2)0.182(3)0.060(2)0.138(2)−0.044(2)0.053(2)−0.030(2)
O(3)8f0.30467(6)0.3581(2)1.1396(2)0.069(1)0.064(1)0.064(1)0.009(1)−0.011(1)0.015(1)
O(4)8f0.29905(7)0.2965(2)0.9782(2)0.078(1)0.062(1)0.083(1)0.021(1)0.001(1)−0.004(1)
O(5)8f0.26781(6)0.5546(2)1.1797(1)0.060(1)0.067(1)0.0443(9)0.0059(9)−0.0085(8)0.0090(8)

Source of material

A mixture of Mg(CH3COO)2 · 4H2O (0.25 mmol), sarafloxacin (0.5 mmol), 1,4-benzenedicarboxylic acid (0.25 mmol), sodium hydroxide (1 mmol), and water (15 mL) was stirred for 30 min in air. The mixture was then transferred to a 25-mL Teflon-lined hydrothermal autoclave reactor. The reactor was heated to 433 K for 96 h under autogenous pressure. After cooling, colorless single crystals of title compound suitable for X-ray analysis were obtained.

Discussion

Sarafloxacin (HSara), C20H17F2N3O3 (systematic name 6-fluoro-1-(4-fluorophenyl)-4-oxo-7-(piperazin-1-yl)-1,4-dihydro-quinoline-3-carboxylic acid), is a member of the fluoroquinolone family of antibiotics, widely used in veterinary clinical practice because of its wide antibiotic spectrum and its excellent bactericidal activity [1].

Our interest in sarafloxacin and related fluoroquinolones is focused on their potential as multidentate/bridging ligands in coordination chemistry. Our aim is trying to prepare a corresponding magnesium(II) complex, but the title compound was obtained.

The title structure is built up from mono protonated sparfloxacin cations and 1,4-benzenedicarboxylate anions in the ratio 2:1. There are two intermolecular N - H⋯O hydrogen bonds from the positively charged piperazinium ring towards the carboxylate groups of two counter anions.


Corresponding author: Xin-Hua Zhao, School of Public Health, Guangdong Pharmaceutical University, Guangzhou 510310, People's Republic of China, e-mail:

Acknowledgements:

The author acknowledge financial support from the Talent Introduction Funds of Department of Education of Guangdong Province (grant No. 201242) and the Talent Introduction Funds of Guangdong province (grant No. 2009–109).

References

1. Andersson, M. I.; MacGowan, A. P. Development of the quniolones. J. Antimicrob. Chemother. 51, (2003) 1–11.10.1093/jac/dkg212Search in Google Scholar PubMed

2. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64, (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

Received: 2015-5-7
Accepted: 2015-12-16
Published Online: 2016-1-20
Published in Print: 2016-3-1

©2016 Zhe An et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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  69. Crystal structure of (E)-2,4-dibromo-6-(((2-nitrophenyl)imino)methyl)phenol, C13H8Br2N2O3
  70. The crystal structure of 6-chloro-2,4-diphenylquinoline
  71. Crystal structure of (E)-2-(((1,10-phenanthrolin-5-yl)imino)methyl)-5-methylphenol monohydrate, C20H15N3O·H2O
  72. Crystal structure of tris(3-(2-pyridyl)pyrazole)zinc(II)tetrachlorido zincate(II), C24H21Cl4N9Zn2
  73. Crystal structure of 4-chloro-N,N-diethyl-6-(piperidin-1-yl)-1,3,5-triazin-2-amine, C12H20ClN5
  74. The crystal structure of 4-allyl-5-benzyl-2,4-dihydro-3H-1,2,4-triazol-3-one, C12H13N3O
  75. Crystal structure of diethyl 2-(((2-(pyridin-3-ylthio)phenyl)amino)methylene)malonate, C19H20N2O4S
  76. Crystal structure of fac-tricarbonyl(2-(isopropylimino)methyl-5-methylphenolatido-κ2N,O)(pyridine-κN)rhenium(I), C19H19N2O4Re
  77. Crystal structure of 1,3,6,8-tetrakis(p-tolylthio)pyrene, C44H34S4
  78. Crystal structure of catena-poly-(diaqua-(μ2-1,2-bis(4-pyridyl)ethene-κ2N:N′)-(4-methylphthalato-κ2O,O′)-cobalt(II)trihydrate, C21H26CoN2O9
  79. Crystal structure of tetraethylammonium fac-tricarbonyl(hexafluoroacetylacetonato-κ2O,O′)-(nitrato-κO)rhenium(I), C16H21O8N2F6Re
  80. Crystal structure of 3-(thiophen-2-yl)-5-(p-tolyl)-4,5-dihydro-1H-pyrazole-1-carboxamide
  81. Crystal structure of bis(1-ethyl-3-methylimidazolium) tetrabromidocadmate(II), [C6H11N2]2[CdBr4]
  82. Crystal structure of N′-(adamantan-2-ylidene)-isonicotinohydrazide, C16H19N3O
  83. Crystal structure of trans-tetraaquabis(4-(pyridin-4-ylsulfonyl)pyridine-κN)cobalt(II) diperchlorate dihydrate, C20H28Cl2CoN4O18S2
  84. Crystal structure of (Z)-4-(furan-2-yl(p-tolylamino)methylene)-3-methyl-1-p-tolyl-1H-pyrazol-5(4H)-one, C23H21N3O2
  85. Crystal structure of 2-[(4-fluorobenzyl)sulfanyl]-4-(2-methylpropyl)-6-oxo-1,6-dihydropyrimidine-5-carbonitrile, C16H16FN3OS
  86. Crystal structure of poly[octaaqua-tris(benzene-1,2,4,5-tetracarboxylato)tetralanthanum(III)] hexahydrate, C30H34La4O38
  87. Crystal structure of trans-tetraaqua-bis(4,4′-sulfonyldipyridine-κN)zinc(II) diperchlorate dihydrate, C20H28Cl2ZnN4O18S2
  88. Crystal structure of 4-nitro-thiophene-2-carboxylic acid, a structure with a Z′ = 4, C5H3NO4S
  89. Crystal structure of dirubidium trimercury(II) tetraselenide, Rb2Hg3Se4
  90. Crystal structure of 5-(adamantan-1-yl)-3-[(4-chloroanilino)methyl]-2,3-dihydro-1,3,4-oxadiazole-2-thione, C19H22ClN3OS
  91. Crystal structure of hexaaquamagnesium(II) 5,5′-bitetrazole-1,1′-diolate, C2H12N8O8Mg
  92. The crystal structure of catena-poly[(μ2-1,1′-benzene-1,4-diylbis(1H-benzimidazole-κ2N:N′)silver(I)] nitrate, C20H14N5AgO3
  93. The crystal structure of 1-(2-(4-chlorophenoxy)-4-chlorophenyl)ethanone, C14H10Cl2O2
  94. The crystal structure of 3,5-dinitro-1,3,5-oxadiazinane, C3H6N4O5
  95. Crystal structure of methyl 5-methoxy 1H-indole-2-carboxylate, C11H11NO3
  96. Crystal structure of (Z)-1-(((3-acetyl-2-hydroxyphenyl)amino)methylene)naphthalen-2(1H)-one, C19H15NO3
  97. Crystal structure of (Z)-5-(4-chlorobenzylidene)-2-thioxothiazolidin-4-one —dimethylsulfoxide (1:1), C12H12ClNO2S3
  98. Crystal structure of 5,5′-((4-(trifluoromethyl)phenyl)methylene)bis(1,3-dimethylpyrimidine-2,4,6(1H,3H,5H)-trione) – diethylamine – dichloromethane (1/1/1) C25H32Cl2F3N5O6
  99. Crystal structure of 2-(dimethylsulfanylidene)-N-(4-methoxyphenyl)-3-oxo-3-phenylpropanamide
  100. Crystal structure of (1,10-phenanthroline-κ2N,N′)bis(thiocyanato-κN)platinum(II), C14H8N4PtS2
  101. Crystal structure of di(μ2-chlorido)bis[2-(2-pyridyl)phenyl-κ2N,C1]dipalladium(II), C22H16Cl2N2Pd2
  102. Crystal structure of trans-dibromidodi(pyridine-κN)palladium(II), PdBr2(C5H5N)2
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