Home Crystal structure of cyclo[tetra(μ2-cyanido)-tetracyanido-bis(1,4,7,10-tetraazacyclododecane-κ4N,N′,N′′,N′′′)dinickel(II)dipalladium(II)] hexahydrate, C24H52N16Ni2O6Pd2
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Crystal structure of cyclo[tetra(μ2-cyanido)-tetracyanido-bis(1,4,7,10-tetraazacyclododecane-κ4N,N′,N′′,N′′′)dinickel(II)dipalladium(II)] hexahydrate, C24H52N16Ni2O6Pd2

  • Kwang Ha ORCID logo EMAIL logo
Published/Copyright: October 2, 2019

Abstract

C24H52N16Ni2O6Pd2, monoclinic, P21/c (no. 14), a = 8.6416(3) Å, b = 14.2237(5) Å, c = 15.5573(5) Å, β = 93.8054(12)°, V = 1908.02(11) Å3, Z = 2, Rgt(F) = 0.0312, wRref(F2) = 0.0915, T = 223(2) K.

CCDC no.: 1952876

The molecular structure is shown in the figure (Only the asymmetric unit is labelled). Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Purple rod
Size:0.20 × 0.15 × 0.10 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.96 mm−1
Diffractometer, scan mode:PHOTON 100 CMOS, φ and ω
θmax, completeness:26.1°, >99%
N(hkl)measured, N(hkl)unique, Rint:51951, 3786, 0.039
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3419
N(param)refined:226
Programs:Bruker [1], SHELX [2], ORTEP-3 [3], PLATON [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Pd10.86507(3)0.57290(2)0.42425(2)0.02344(10)
Ni10.50742(4)0.28563(3)0.36438(3)0.01641(11)
N10.3688(3)0.16644(19)0.35914(18)0.0227(6)
H10.30310.16940.40880.027*
N20.3430(3)0.3350(2)0.26613(19)0.0254(6)
H20.31000.39950.28020.030*
N30.6291(3)0.2550(2)0.25602(19)0.0255(6)
H30.58870.19550.23030.031*
N40.6761(3)0.1908(2)0.42167(19)0.0266(6)
H40.72450.21870.47530.032*
N50.6426(3)0.4039(2)0.3880(2)0.0273(6)
N60.3761(3)0.3316(2)0.4640(2)0.0278(6)
N71.0757(4)0.7496(3)0.4377(2)0.0442(9)
N81.0824(5)0.4854(3)0.2955(3)0.0476(9)
C10.2639(4)0.1695(3)0.2803(2)0.0324(8)
H1A0.17520.12770.28630.039*
H1B0.31880.14900.23050.039*
C20.2087(4)0.2702(3)0.2678(3)0.0331(8)
H2A0.14490.27530.21350.040*
H2B0.14460.28790.31480.040*
C30.4154(5)0.3355(3)0.1821(2)0.0348(9)
H3A0.38550.39290.15030.042*
H3B0.37800.28150.14760.042*
C40.5914(5)0.3310(3)0.1963(3)0.0416(10)
H4A0.63800.31940.14150.050*
H4B0.63170.39060.22010.050*
C50.7898(5)0.2408(3)0.2877(3)0.0400(10)
H5A0.83510.30080.30750.048*
H5B0.84990.21710.24100.048*
C60.7973(4)0.1723(3)0.3600(3)0.0373(9)
H6A0.89990.17570.39070.045*
H6B0.78370.10860.33680.045*
C70.5901(5)0.1045(3)0.4424(3)0.0359(9)
H7A0.54090.11330.49680.043*
H7B0.66250.05160.44950.043*
C80.4669(5)0.0825(2)0.3709(3)0.0308(8)
H8A0.51550.06750.31740.037*
H8B0.40450.02840.38680.037*
C90.7241(4)0.4652(2)0.4044(2)0.0233(7)
C100.2862(4)0.3665(2)0.5039(2)0.0231(7)
C111.0005(4)0.6835(3)0.4363(2)0.0280(8)
C121.0065(4)0.5157(3)0.3459(3)0.0295(8)
O10.1713(4)0.0869(3)0.4848(3)0.0646(10)
H110.09900.08650.51830.097*
H120.13160.04450.45280.097*
O20.6062(5)0.0786(4)0.1519(3)0.0975(19)
H210.69790.06130.14620.146*
H220.54410.04190.12500.146*
O30.9449(8)0.4401(3)0.1203(3)0.1043(19)
H310.92690.38220.12320.156*
H320.95960.44730.17380.156*

Source of material

To a solution of K2Pd(CN)4⋅xH2O (0.1191 g; 0.413 mmol in anhydrous basis) in H2O (20 mL) were added 1,4,7,10-tetraazacyclododecane⋅4HCl (0.1028 g, 0.323 mmol) and Ni(CH3CO2)2⋅4H2O (0.0856 g, 0.344 mmol), followed by refluxing for 3 h. After cooling, the formed precipitate was separated by filtration, washed with H2O and acetone, and dried at 50 °C, to give a pale blue powder (0.1282 g). From the filtrate and washing solution was obtained a small amount of a purple powder. Purple cystals suitable were obtained by the slow evaporation from H2O at 60 °C.

Experimental details

Hydrogen atoms were positioned geometrically and allowed to ride on their parent atoms with d(C—H) = 0.98 Å, d(N—H) = 0.99 Å and Uiso(H) = 1.2Ueq(C,N) with the help of the SHELXL program (AFIX 23 or 13 options) [2]. The H atoms of the solvent water molecules were located from difference maps then allowed to ride on their parent O atom in the final cycles of refinement with d(O—H) = 0.84 Å. The highest peak (1.18 e Å−3) and the deepest hole (−0.52 e Å−3) in the difference Fourier map are located 0.27 Å and 0.49 Å from the atoms Ni1 and Pd1, respectively.

Comment

The crystal structures of the related cyanido-bridged complexes [(cyclen)Ni(μ2-NC)2M(CN)2]2⋅6H2O (cyclen = 1,4,7,10-tetraazacyclododecane; M = Pt, Ni) and [(cyclen)Mn(μ2-NC)2Ni(CN)2]2⋅6H2O have been determined previously [5].

The title complex has a cyclic tetranuclear structure, in which four cis-cyanido ligands of two Pd(II) units [Pd(CN)4]2− are linked to two Ni(II) units [Ni(cyclen)]2+, and is isostructural with the previously reported complexes. In the complex, each Pd(II) ion is coordinated in a slightly distorted square-planar environment by four C atoms from four CN ligands, whereas each Ni(II) ion is six-coordinated in a distorted octahedral coordination geometry by four N atoms of a tetradentate cyclen ligand and two N atoms derived from two mutually cis-positioned bridging CN ligands. The linking of two Pd units and two Ni units forms a slightly puckered 12-membered square structure, and an inversion center is located at the center of the square; the asymmetric unit contains one half of the compound. The Pd—C and C≡N bond lengths are almost equal with d(Pd—C) = 1.960(4)–1.973(3) Å and d(C≡N) = 1.139(5)–1.143(5) Å), respectively. Two of the Ni—N(cyclen) bonds [Ni1—N2/4 = 2.135(3) and 2.137(3) Å] are slightly longer than the other Ni—N(cyclen) bonds [Ni1—N1/3 = 2.074(3) and 2.091(3) Å] and the Ni—N(cyanido) bonds [Ni1—N5/6 = 2.067(3) and 2.086(3) Å]. In the crystal structure, the complex and solvent water molecules are linked by extensive intermolecular N—H⋯O, N—H⋯N, O—H⋯O and O—H⋯N hydrogen bonds with distances of 2.796(7)–3.318(5) Å between the donor and acceptor atoms, forming a three-dimensional network [4].

Funding source: Chonnam National University

Award Identifier / Grant number: 2018-3317

Funding statement: This study was financially supported by Chonnam National University (Grant number: 2018-3317). The author thanks the KBSI, Seoul Center, for the X-ray data collection.

References

1. Bruker. APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, WI, USA (2009).Search in Google Scholar

2. Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central

3. Farrugia, L. J.: ORTEP-3 for Windows-a version of ORTEP-III with a graphical user interface (GUI). J. Appl. Crystallogr. 30 (1997) 565.10.1107/S0021889897003117Search in Google Scholar

4. Spek, A. L.: Single-crystal structure validation with the program PLATON. J. Appl. Crystallogr. 36 (2003) 7–13.10.1107/S0021889802022112Search in Google Scholar

5. Yeung, W.-F.; Kwong, H.-K.; Lau, T.-C.; Gao, S.; Szeto, L.; Wong, W.-T.: Cyano-bridged molecular squares: synthesis and structures of [Ni(cyclen)]2[Pt(CN)4]2⋅6H2O, [Ni(cyclen)]2[Ni(CN)4]2⋅6H2O and [Mn(cyclen)]2[Ni(CN)4]2⋅6H2O. Polyhedron 25 (2006) 1256–1262.10.1016/j.poly.2005.09.004Search in Google Scholar

Received: 2019-08-09
Accepted: 2019-09-11
Published Online: 2019-10-02
Published in Print: 2019-12-18

©2019 Kwang Ha, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  81. A redetermination of the crystal structure of catena-poly[(bis(O,O′-isopropyl dithiophosphato-κ2S,S′)-(μ2-1,2-bis(3-pyridylmethylene)hydrazine-κ2N,N′)cadmium(II)], {C24H38CdN4O4P2S4}n
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