Home Physical Sciences Crystal structure of 3-(3-(pyridin-3-yl)ureido)benzoic acid, C13H11N3O3
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Crystal structure of 3-(3-(pyridin-3-yl)ureido)benzoic acid, C13H11N3O3

  • Qi-Long Zhang EMAIL logo , Hai-Fang Xie , Qing Yu and Xiao-Sheng Yang
Published/Copyright: August 23, 2019

Abstract

C13H11N3O3, Orthorhombic, Pna21 (no. 33), a = 9.2062(6) Å, b = 11.5258(7) Å, c = 11.5263(7) Å, V = 1223.04(13) Å3, Z = 4, Rgt(F) = 0.0377, wRref(F2) = 0.1006, T = 293(2) K.

CCDC no.: 1941327

The crystal structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless block
Size:0.25 × 0.23 × 0.21 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.10 mm−1
Diffractometer, scan mode:Bruker SMART, φ and ω-scans
θmax, completeness:25°, >99%
N(hkl)measured, N(hkl)unique, Rint:7453, 2045, 0.030
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1794
N(param)refined:172
Programs:Bruker programs [1], SHELX [2], SHELX [3], DIAMOND [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
N10.2743(3)0.3323(2)−0.0772(2)0.0384(6)
H10.18100.3286−0.07870.046*
N20.2597(3)0.1570(2)0.0141(2)0.0370(6)
H20.16820.17130.01780.044*
N30.4868(3)−0.0725(3)0.1415(3)0.0543(9)
O10.7452(3)0.4245(2)−0.2736(3)0.0641(9)
H1A0.82660.4289−0.30230.096*
O20.7441(3)0.6134(2)−0.3080(3)0.0695(9)
O30.4798(2)0.23308(19)−0.0301(3)0.0527(7)
C10.6841(4)0.5287(3)−0.2727(3)0.0476(9)
C20.5343(4)0.5312(3)−0.2218(3)0.0399(8)
C30.4749(3)0.4302(3)−0.1753(3)0.0374(7)
H30.52650.3609−0.17940.045*
C40.3390(3)0.4325(3)−0.1230(3)0.0361(7)
C50.2613(4)0.5353(3)−0.1212(3)0.0510(10)
H50.16930.5375−0.08810.061*
C60.3208(5)0.6346(3)−0.1688(4)0.0613(11)
H60.26860.7037−0.16710.074*
C70.4573(5)0.6320(3)−0.2187(3)0.0532(10)
H70.49660.6993−0.25020.064*
C80.3463(3)0.2411(3)−0.0308(3)0.0338(6)
C90.3070(3)0.0487(3)0.0550(3)0.0348(7)
C100.4423(4)0.0318(3)0.1048(3)0.0449(9)
H100.50420.09500.11310.054*
C110.3976(4)−0.1629(3)0.1312(4)0.0578(10)
H110.4304−0.23580.15380.069*
C120.2598(4)−0.1524(3)0.0886(4)0.0539(10)
H120.1979−0.21610.08680.065*
C130.2141(4)−0.0459(3)0.0486(3)0.0442(8)
H130.1215−0.03740.01750.053*

Source of materials

A solution of pyridine-3-isocyanate (4 mmol) in ethanol (15 mL) was added to a stirred ethanol solution (15 mL) of m-aminobenzoic acid (4 mmol) in a three-necked flask. The reaction mixture was refluxed for 4 h, then the solution was cooled to room temperature. The white precipitated residue was removed from the solution by filtration and then washed with ethanol and ether 3 times. Single crystals suitable for X-ray diffraction were obtained from an ethanol by slow evaporation at room temperature.

Experimental details

All hydrogen atoms were positioned geometrically, with the d(C—H) = 0.97–0.99 Å, Uiso(H) = 1.2 times Ueq(C) and Uiso(H) = 1.5 times Ueq(O).

Comment

Urea molecules are well studied in crystal engineering for the rational construction of supramolecular architectures and design of non-linear optical (NLO) materials for second harmonic generation (SHG) [5], [6].

In the crystal structure of the title compound, the pyridine ring and benzene ring are linked by an ureido moiety, forming a non-coplanar structure. The bond lengths and bond angles are in the normal ranges [7]. There are intramolecular hydrogen bonds (for example: C3—H3⋯O3) in the molecules. The carbonyl-oxygen atom in the carbamido group of one molecule forms hydrogen bonds (N1—H1⋯O3 and N2—H1⋯O3) with the two nitrogen atoms in the carbamido group of another molecule, which makes the molecule extended to form the one-dimensional polymeric (1D) structure. The three-dimensional (3D) structure is formed through the extension of the hydrogen bond (O1—H1A⋯N3) of the one-dimensional (1D) structure.

Funding source: Guizhou Province – Public Health and Preventive Medicine

Award Identifier / Grant number: NO.2017[85]

Funding source: Science and Technology Foundation of Guizhou Province

Award Identifier / Grant number: [2019]2792

Award Identifier / Grant number: [2018]5779–14

Funding statement: This work was supported by the first-class discipline construction project in Guizhou Province – Public Health and Preventive Medicine (NO.2017[85]), Science and Technology Foundation of Guizhou Province (grant number [2019]2792, grant number[2018]5779–14).

References

1. Bruker. APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, WI, USA (2012).Search in Google Scholar

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3. Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central

4. Brandenburg, K.: DIAMOND. Visual Crystal Structure Information System. Ver. 4.0. Crystal Impact, Bonn, Germany (2015).Search in Google Scholar

5. George, S.; Nangia, A.; Lam, C. K.; Mak, T. C. W.; Nicoud, J. F.: Crystal engineering of urea α-network via I⋯O2N synthon and design of SHG active crystal N-4-iodophenyl-N′-4′-nitrophenylurea. Chem. Commun. 10 (2004) 1202–1203.10.1039/B402050BSearch in Google Scholar

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7. Park, H.; Kim, J.; Kwon, E.; Kim, T. H.: Crystal structure of flucetosulfuron. Acta Crystallogr. E 73 (2017) 1439–1442.10.1107/S2056989017012737Search in Google Scholar PubMed PubMed Central

Received: 2019-06-30
Accepted: 2019-07-25
Published Online: 2019-08-23
Published in Print: 2019-12-18

©2019 Qi-Long Zhang et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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