Home Physical Sciences Crystal structure of catena-poly[aqua-(μ2-hexamethylenetetramine-κ2N:N′)-bis(2,6-difluorobenzoato-κ2O:O′)cadmium(II)]monohydrate, C20H22CdF4N4O6
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Crystal structure of catena-poly[aqua-(μ2-hexamethylenetetramine-κ2N:N′)-bis(2,6-difluorobenzoato-κ2O:O′)cadmium(II)]monohydrate, C20H22CdF4N4O6

  • Yuan Hou-Qun , Wang Wen-Min , Huang Chang-Gan , Xiao Wei and Bao Guang-Ming EMAIL logo
Published/Copyright: July 29, 2017

Abstract

C20H22CdF4N4O6, orthorhombic, P212121 (no. 19), a = 7.475(3) Å, b = 12.246(5) Å, c = 24.615(11) Å, V =2253.0(17) Å3, Z = 4, Rgt(F) = 0.0245, wRref(F2) = 0.0706, T = 296(2) K.

CCDC no.:: 1009373

A part of the title crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless block
Size:0.28 × 0.24 × 0.19 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:10.5 cm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
2θmax, completeness:56.6°, >99%
N(hkl)measured, N(hkl)unique, Rint:13694, 5379, 0.029
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 5272
N(param)refined:332
Programs:Bruker programs [1], SHELX [2]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cd1−0.05369(2)0.280356(14)0.244183(7)0.02140(6)
O10.0575(3)0.23144(18)0.15766(9)0.0383(5)
C10.1827(4)0.3007(2)0.15616(10)0.0253(5)
O20.2120(3)0.36609(17)0.19342(8)0.0343(5)
C20.3018(4)0.3003(2)0.10697(10)0.0264(6)
C30.3096(4)0.3877(3)0.07116(12)0.0317(6)
F10.2027(3)0.47473(16)0.08168(9)0.0505(5)
C40.4179(5)0.3903(3)0.02646(14)0.0485(9)
H70.41720.44970.00300.058*
C50.5275(6)0.3026(4)0.01732(16)0.0635(11)
H80.60410.3035−0.01250.076*
C60.5270(6)0.2127(4)0.05133(15)0.0583(10)
H90.60250.15360.04510.070*
C70.4113(4)0.2140(3)0.09450(11)0.0367(6)
F20.4067(3)0.12527(16)0.12726(9)0.0527(6)
O3−0.2439(3)0.26013(17)0.31871(8)0.0367(5)
C8−0.1676(4)0.3296(2)0.34744(10)0.0259(5)
O4−0.0276(3)0.37923(16)0.33295(8)0.0311(4)
C9−0.2492(4)0.3550(2)0.40176(11)0.0290(6)
C10−0.4301(5)0.3750(3)0.40820(12)0.0366(7)
F3−0.5341(3)0.37500(19)0.36333(9)0.0528(5)
C11−0.5098(6)0.3999(3)0.45711(16)0.0533(10)
H10−0.63120.41570.45940.064*
C12−0.4026(6)0.4003(4)0.50239(15)0.0593(11)
H11−0.45380.41430.53610.071*
C13−0.2207(6)0.3803(3)0.49929(13)0.0523(10)
H12−0.14930.38160.53020.063*
C14−0.1490(5)0.3586(3)0.44894(12)0.0380(7)
F40.0286(3)0.3376(2)0.44587(8)0.0550(5)
N10.1461(3)0.14677(17)0.28256(8)0.0208(4)
C150.1637(4)0.1461(2)0.34344(10)0.0258(5)
H130.21030.21590.35550.031*
H140.04650.13620.35960.031*
N20.2827(3)0.05890(19)0.36178(9)0.0272(5)
C160.4609(4)0.0729(2)0.33745(10)0.0281(5)
H150.53930.01490.34990.034*
H160.51140.14200.34910.034*
N30.4503(3)0.07057(16)0.27768(9)0.0241(4)
C170.3298(3)0.1587(2)0.26042(10)0.0240(5)
H170.32390.15970.22110.029*
H180.37880.22810.27220.029*
C180.2091(4)−0.0461(2)0.34448(11)0.0256(5)
H190.0924−0.05630.36100.031*
H200.2866−0.10440.35700.031*
C190.0753(3)0.03885(19)0.26643(10)0.0210(5)
H210.06310.03660.22720.025*
H22−0.04280.02940.28210.025*
N40.1915(3)−0.05240(17)0.28418(9)0.0212(4)
C200.3738(3)−0.0350(2)0.26082(11)0.0243(5)
H230.4521−0.09350.27260.029*
H240.3667−0.03740.22150.029*
O5−0.2730(3)0.1654(2)0.21132(10)0.0402(5)
H5A−0.250(7)0.135(4)0.1824(12)0.09(2)*
H5B−0.339(6)0.135(4)0.2336(15)0.092(18)*
O60.1471(4)0.5586(2)0.38381(11)0.0479(6)
H6A0.109(10)0.498(3)0.394(4)0.22(5)*
H6B0.075(5)0.609(3)0.3872(19)0.071(16)*

Source of materials

An aqueous solution (10 mL) of 2,6-difluorobenzoic acid (110 mg, 0.70 mmol), NaHCO3 (60 mg, 0.70 mmol), and hexamethylenetetramine (50 mg, 0.36 mmol) was mixed with an ethanolic solution (10 mL) of Cd(NO3)2⋅6H2O (250 mg, 0.81 mmol). The resulting colorless solution was allowed to stand at room temperature to give colorless needle crystals within two weeks (yield 66 mg, 31%).

Experimental details

H atoms bound to C atoms were places in calculated positions and refined as riding on their parent atoms, with C—H = 0.93 Å (aromatic), C—H = 0.96 Å (methylene), C—H = 0.97 Å (ethylene), with Uiso(H) = 1.2 Ueq(C) for all H atoms. H atoms bound to water molecules were found from the Fourier difference map.

Comment

Coordination polymers have received much attention in recent years because of their potential applications such as catalysis, separation, gas storage, luminescence, and magnetism [3], [4], [5]. The traditional strategy of construction of coordination polymers is the self-assembly of organic molecules and metal ions. Bi- or polytopic molecules such as anionic aromatic acids and neutral N-containing heterocyclic molecules are usually used as organic ligands for extending the structures. Among various aromatic acids, the “parent” acid, namely, benzoic acid or its substituted derivatives, have been utilized rather rarely in literature because it has only one carboxyl group, although some polynuclear clusters have been reported so far [6], [7], [8]. The fluorine substituted molecules are good candidates for construction of functional coordination polymers, because they are more stable to oxidation and show enhanced thermal stability [9]. Usage of pentafluorobenzoate as ligand has been reported in some studies, while only few complexes with 2,6-difluorobenzoate (dfba) as ligand have been reported [10, 11] . On the other hand, for the N-heterocyclic ligands, hexamethylenetetramine (hmt), which has four coordinating N atoms, is a good neutral bridging ligand, not only because it has various coordination modes that span from terminal monodentate to μ2-, μ3-, or μ4-bridging mode; but also because it can act as hydrogen bonding acceptor to generate supramolecular networks [12, 13] .

The asymmetric unit of the title complex contains one Cd2+ ion, two dfba ligands, one hmt ligand, one coordinated and one not coordinated water molecule. The Cd2+ ion is seven coordinated in a distorted pentagonal bipyramidal geometry with four oxygen atoms from two dfba ligands, two nitrogen atoms from two hmt molecules, and one water molecule. N1 and N4i are located at the axial positions, and O1, O2, O3, O4, and O5 are in the equatorial plane. It is obviously that the distances of Cd1—O2 (2.571(2) Å) and Cd1—O4 (2.506(2) Å) are longer than those of Cd1—O1, Cd1—O3, and Cd1—O5 (av. 2.307(2) Å). The carboxyl groups of two dfba ligands adopt chelating coordination modes. Each hmt ligand bridges two Cd2+ ions through N1 and N4 atoms with the Cd⋯Cd distance of 6.182 Å to form a chain along b. The uncoordinated water molecule is hydrogen bonded with the water ligand (O5—H5A⋯O6 = 2.842(4) Å), and two oxygen atoms of different carboxylate groups (O6—H6B⋯O1 = 2.803(4), O6—H6A⋯O4 = 2.845(4) Å). The neighboring chains along a are hydrogen bonded with each other through the coordinated water molecules and the nitrogen atoms of hmt ligands (O5—H5B⋯N3 = 2.881(3) Å) to form a 2D network.

Award Identifier / Grant number: 20112BBF60024

Award Identifier / Grant number: 20151BAB204014

Funding statement: This work was supported by the National Nature Foundation of China [No. 21461011 and 31560712], the Natural Science Foundation of Jiangxi Province [No. 20112BBF60024, 20151BAB204014].

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Received: 2017-2-21
Accepted: 2017-7-13
Published Online: 2017-7-29
Published in Print: 2017-9-26

©2017 Yuan Hou-Qun et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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