Home Synthesis and crystal structure of 1-((3R,10S,13S,17S)-10,13-dimethyl-3-(m-tolylamino)hexadecahydro-1H-cyclopenta[α]phenanthren-17-yl)ethan-1-one, C28H41NO
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Synthesis and crystal structure of 1-((3R,10S,13S,17S)-10,13-dimethyl-3-(m-tolylamino)hexadecahydro-1H-cyclopenta[α]phenanthren-17-yl)ethan-1-one, C28H41NO

  • Jin-Feng Zhao ORCID logo , Wen-Wen Zhang , Jiang-Hai Ye , Kang He EMAIL logo and Juan Zou EMAIL logo
Published/Copyright: April 13, 2023
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Zeitschrift für Kristallographie - New Crystal Structures
From the journal Zeitschrift für Kristallographie - New Crystal Structures Volume 238 Issue 3

Abstract

C28H41NO, triclinic, P 1 (no. 1), a = 6.3144(8) Å, b = 9.7315(13) Å, c = 10.5867(14) Å, α = 111.561(4)°, β =  96.486 ( 4 ) ∘ , γ = 97.128(4)°, V = 591.41(14) Å3, Z = 1, R g t (F) = 0.0579, w R r e f (F 2) = 0.1687, T = 273(2) K.

CCDC no.: 2246864

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.23 × 0.20 × 0.18 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.07 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θ max, completeness: 35.6°, 98%
N(hkl)measured, N(hkl)unique, R int: 29,665, 10,643, 0.050
Criterion for I obs, N(hkl)gt: I obs > 2σ(I obs), 4969
N(param)refined: 275
Programs: Olex2 [1], Bruker [2], SHELX [3], Diamond [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
C1 0.3977 (3) 0.3899 (3) 0.4830 (2) 0.0580 (5)
C2 0.4134 (4) 0.2901 (3) 0.3364 (3) 0.0660 (6)
C3 0.5357 (4) 0.3772 (3) 0.2645 (2) 0.0626 (6)
C4 0.7569 (4) 0.4556 (3) 0.3507 (2) 0.0636 (6)
C5 0.7349 (3) 0.5587 (2) 0.4958 (2) 0.0532 (5)
C6 0.9502 (4) 0.6565(3) 0.5788 (2) 0.0655 (6)
C7 0.9194 (4) 0.7696 (3) 0.7155 (3) 0.0623 (6)
C8 0.8023 (3) 0.6947 (2) 0.7991 (2) 0.0482 (4)
C9 0.5854 (3) 0.5940 (2) 0.7120 (2) 0.0455 (4)
C10 0.6183 (3) 0.4744 (2) 0.5742 (2) 0.0452 (4)
C11 0.4537 (3) 0.5303 (3) 0.7978 (2) 0.0574 (5)
C12 0.4256 (3) 0.6487 (3) 0.9350 (2) 0.0586 (5)
C13 0.6450 (3) 0.7380 (2) 1.0210 (2) 0.0506 (5)
C14 0.7597 (3) 0.8082 (2) 0.9327 (2) 0.0510 (5)
C15 0.9502 (4) 0.9224 (3) 1.0348 (3) 0.0683 (6)
C16 0.8640 (5) 0.9831 (3) 1.1697 (3) 0.0742 (8)
C17 0.6437 (4) 0.8823 (3) 1.1511 (2) 0.0630 (6)
C18 0.7770 (4) 0.6357 (3) 1.0651 (3) 0.0619 (5)
C19 0.7492 (4) 0.3612 (3) 0.6009 (3) 0.0597 (5)
C20 0.6025 (5) 0.8535 (4) 1.2784 (3) 0.0785 (8)
C21 0.3787 (5) 0.7898 (5) 1.2826 (3) 0.0927 (10)
C22 0.3938 (4) 0.2477 (3) 0.0107 (2) 0.0582 (5)
C23 0.2002 (4) 0.3021 (3) 0.0190 (3) 0.0659 (6)
C24 0.0503 (5) 0.2646 (3) −0.1018 (3) 0.0733 (7)
C25 0.0917 (5) 0.1728 (3) −0.2267 (3) 0.0751 (8)
C26 0.2823 (4) 0.1180 (3) −0.2354 (2) 0.0662 (6)
C27 0.4297 (4) 0.1554 (3) −0.1170 (3) 0.0619 (5)
C28 0.3295 (7) 0.0177 (4) −0.3736 (3) 0.0950 (10)
H2 0.286160 0.861779 1.285845 0.139*
H2A 0.268610 0.245986 0.284028 0.079*
H3 −0.009967 0.147496 −0.306053 0.090*
H4 −0.078205 0.302238 −0.097239 0.088*
H5 0.557943 0.117436 −0.122952 0.074*
H6 0.466386 0.059277 −0.387947 0.143*
H7 0.217260 0.011219 −0.445791 0.143*
H10 0.454228 0.455106 0.259918 0.075*
H11 1.048614 0.593444 0.594993 0.079*
H12 0.836240 0.840490 0.698906 0.075*
H13 1.059874 0.825148 0.768663 0.075*
H14 0.994145 1.002413 1.004148 0.082*
H15 1.073146 0.874494 1.045246 0.082*
H16 0.845375 1.086204 1.191010 0.089*
H17 0.964709 0.980306 1.244709 0.089*
H18 0.692383 0.585540 1.110549 0.093*
H19 0.907108 0.695209 1.127129 0.093*
H20 0.814098 0.562491 0.985159 0.093*
H23 0.307670 0.462744 0.479629 0.070*
H24 0.487086 0.208983 0.338372 0.079*
H26 0.326338 0.328399 0.525568 0.070*
H27 0.670504 0.308897 0.647208 0.090*
H28A 0.886728 0.413822 0.657458 0.090*
H28 0.334774 −0.080802 −0.374485 0.143*
H29 0.771896 0.290263 0.514628 0.090*
H30 0.500138 0.660506 0.686808 0.055*
H31 0.337780 0.716762 0.917205 0.070*
H32 0.350606 0.599686 0.986402 0.070*
H33 0.326434 0.699976 1.201641 0.139*
H34 0.378566 0.766365 1.363154 0.139*
H35 0.528986 0.932510 1.127728 0.076*
H36 0.660551 0.866654 0.906250 0.061*
H37 0.894672 0.630465 0.822186 0.058*
H38 1.014484 0.709055 0.526429 0.079*
H39 0.641409 0.627665 0.483713 0.064*
H40 0.842402 0.381166 0.356432 0.076*
H41 0.831871 0.514158 0.306941 0.076*
H42 0.170539 0.362625 0.103765 0.079*
H111 0.311500 0.480399 0.743701 0.069*
H112 0.524789 0.455315 0.816455 0.069*
N1 0.5544 (4) 0.2855 (3) 0.1254 (2) 0.0758 (6)
H1 0.673167 0.251874 0.112315 0.091*
O1 0.7441 (5) 0.8789 (4) 1.3745 (3) 0.1231 (10)

1 Source of material

In methanol (10 mL) with 5α-pregnane-3,20-dione (1.6 mmol) and m-methylaniline (1.3 mmol) and 1 drop of acetic acid, the reaction was stirred for 24 h at room temperature. Then sodium borohydride (3.9 mmol) was added to stir for 3 h and the solid product was obtained by reduced pressure. Using ethyl acetate for extraction, add dilute sodium hydroxide to adjust the organic solvent as weak alkaline, then combined organic layer was dried over anhydrous Na2SO4, the crude product was obtained by evaporation under reduced pressure, and then the colorless and transparent crystals were obtained by recrystallization using methanol. 47% yield. Elemental analysis calcd. (%) for C28H41NO: C, 82.50; H, 10.14; N, 3.44; O, 3.92.

2 Comment

The pregnant steroid alkaloid is the main active component of the Sarcococca ruscifolia and its Sarcococca hookeriana, this type of compound has antibacterial, antitumor and significant anticholinesterase inhibition [5], [6], [7]. A series of progesterone alkaloids were isolated from S.  ruscifolia with inhibitory activity on tumor cells [8], [9], [10]. In order to find high-efficient and low-toxic pregnane steroidal alkaloid derivatives, we have prepared several pregnane steroid alkaloids by modifying the C-3 position of a ring to convert pregnane into alkaloid derivatives [11], [12], [13]. For purpose of continuing to synthesize more of these compounds, we introduced m-methylaniline at the C-3 position to obtain the novel compound 1-((3R,10S,13S,17S)-10,13-dimethyl-3-(m-tolylamino)hexadecahydro-1H-cyclopenta[α]phenanthren-17-yl)-ethan-1-one.

The title compound consists of three six-membered rings, a five-membered ring, two methyl groups, and an m-methylaniline. All parameters are in the normal structure range, methyl substituents C10 and C13 on atoms are in the β configuration, m-methylaniline in a plane with a root mean square value of 1.441(3) Å. The carbonyl group is confirmed by distance d(C20–O1) = 1.205(3) Å.

Corresponding authors: Kang He and Juan Zou, Guizhou University of Traditional Chinese Medicine, Guiyang 550025, P.R. China, E-mail: ,

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Key Projects of Guizhou Basic Research Program [grant number Qiankehejichu–ZK (2022) key 046], the Science and Technology Tip-top Talent Foundation of Universities in Guizhou Province [grant number Qianjiaoke–KY (2021) 034].

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2023-03-07
Accepted: 2023-03-24
Published Online: 2023-04-13
Published in Print: 2023-06-27

© 2023 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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https://doi.org/10.1515/ncrs-2023-0105
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Articles in the same Issue

  1. Frontmatter
  2. New Crystal Structures
  3. Crystal structure of phenyl(3,3-dichloro-1,3-dihydro-2H-pyrrolo[2,3-b]pyridin-2-one)methanone, C7H4Cl2N2O
  4. Crystal structure of poly[diaqua-bis(μ 2-1,4-diaminobutane-N:N′)cobalt(II)] dichloride, C8H28Cl2CoN4O2
  5. Synthesis and crystal structure of (4aR,7S)-7-hydroxy-7-isopropyl-1,1-dimethyldecahydro-2H,6H-8a,4a-(epoxymethano)phenanthren-12-one, C20H32O3
  6. The crystal structure of 1-(2-chlorobenzyl)-3-(3,5-dichlorophenyl)urea, C14H11Cl3N2O
  7. Crystal structure of tetrapropylammonium-1,3,5-thiadiazole-5-amido-2-carbamate – 1,2,4-thiadiazole-3,5-diamine – water (1/1/1), C17H37N9O3S2
  8. Tetrabutylammonium 1,3,5-thiadiazole-5-amido-2-carbamate—1,2,4-thiadiazole-3,5-diamine— water (1/1/1), C21H45N9O3S2
  9. The crystal structure of ((E)-2,4-dichloro-6-(((2-hydroxy-5-nitrophenyl)imino)methyl)phenolato-κ 3 N,O,O′)tris(pyridine-κN)manganese(II), C28H21Cl2MnN5O4
  10. The crystal structure of aqua-bis{2-bromo-6-((2-(2-phenylacetyl)hydrazineylidene)methyl)phenolato-κ3 N,O,O′}-dimethylformamide-κ1 O-erbium(III) chloride – dimethylformamide – water (1/2/1), C39H49N7O9Br2ClEr
  11. Crystal structure of (diaqua-bis(phenanthroline-K 2 N,N′)-tetrakis(m 2-3,4,5,6-tetrafluorophthalato-K 4 O,O:O′:O″;K 2 O:O′)dierbium (III) phenanthroline (1/2), C80H38Er2F16N8O18
  12. Crystal structure of (E)-7-methoxy-2-(4-methoxy-2-(trifluoromethyl)benzylidene)-3,4-dihydronaphthalen-1(2H)-one, C20H17F3O3
  13. The crystal structure of 4–(4,4,5,5–tetramethyl–1,3,2–dioxaborolan–2–yl)morpholine, C10H20BNO3
  14. The crystal structure of catena–poly[aqua(1-naphthoato-κ 2 O,O′)-(μ-1-naphthoato-κ 4 O:O,O′:O′)lead(II)], C22H16O5Pb
  15. The crystal structure of 1-(4-chlorophenyl)-3-cycloheptylurea, C14H19ClN2O
  16. The crystal structure of 4-(pyren-1-yl)butyl-4-nitrobenzoate, C27H21NO4
  17. Crystal structure of cyclo-(bis(µ2-3,3′-(1H-imidazole-3-ium-1,3-diyl)dipropionato-κ4 O,O′:O″,O″′)-dinitrato-κ2 O,O′-tetraoxido-diuranium(VI) C18H22N6O18U2
  18. The crystal structure of catena-[nitrato-κ 2 O,O′-(μ 3-3-iodobenzene-1,2-dicarboxylato-κ 4 O:O′:O″,O‴)-(2,2′:6′,2″-terpyridine-κ 3 N,N′,N″)lanthanum(III)], C23H14IN4O7La
  19. Redetermination of crystal structure of [bis(pyridin-2-ylmethyl)amine-κ 3 N,Nʹ,Nʺ]chloridopalladium(II) chloride monohydrate
  20. Crystal structure of catena-poly[triaqua-[bis(m2-4-(1H-1,2,4-triazol-1-yl)benzoato-k2O:O')-(4-(1H-1,2,4-triazol-1-yl)benzoato-k1O)-praseodymium (III) monohydrate], C27H26N9O10Pr
  21. Crystal structure of trans-diaqua-bis(methyl methylcarbamohydrazonothioato-κ2 N,N′) nickel(II) iodide semihydrate, C6H22N6O2NiS2I2·0.5H2O
  22. The crystal structure of 2-(2-fluoro-4-methyl-5-((2,2,2-trifluoroethyl)thio)phenyl)isoindolin-1-one, C17H13F4NOS
  23. The crystal structure of di-μ-1-naphthylacetato-κ 3 O,O′:O;κ 3 O:O,O′-bis[(1-naphthylacetato-κ 2 O,O′)(2,2′-bipyridine-κ 2 N,N′)lead(II)] monohydrate, C68H54N4O9Pb2
  24. Crystal structure of tetrapropylammonium guanidinium 4,4′-sulfonyldibenzoate monohydrate, C27H44N4O7S
  25. Crystal structure of bis(tetrapropylammonium) terephthalate – 1-(diaminomethylene)thiourea – water (1/2/4) C18H40N5O4S
  26. Crystal structure of (E)-7-fluoro-2-(4-morpholinobenzylidene)-3,4-dihydronaphthalen-1(2H)-one, C21H20FNO2
  27. The crystal structure of poly[diaqua-bis(μ 3-5-bromobenzene-1,3-dicarboxylato-κ 3 O,O,O′)-(μ 2-1,3-bis-(4-pyridyl)-propane-κ 2 N,N′)-dizinc(II))] – 5-bromobenzene-1,3-dicarboxylic acid [2/1], C37H29Br3N2O14Zn2
  28. The crystal structure of 2-bromo-1,3-phenylene bis(4-methylbenzenesulfonate), C20H17BrO6S2
  29. Crystal structure of europium dichromium icosaaluminum, EuCr2Al20
  30. The crystal structure of N′1,N′3-di((E)-benzylidene) isophthalohydrazide dihydrate, C 22 H 22 N 4 O 4
  31. Crystal structure of 7α,11α-dihydroxy-15-oxo-ent-kauran-16-en-19,6β-olide, C20H26O5
  32. Crystal structure of 4-chloro-N′-[(1E)-pyridin-3-ylmethylidene]benzohydrazide, C13H10ClN3O
  33. The crystal structure of (Z)-3-(1-(2-((E)-4-isopropylbenzylidene)hydrazinyl)ethylidene) chroman-2,4-dione, C21H20N2O3
  34. Crystal structure of E-7-fluoro-2-(2-(trifluoromethyl)benzylidene)-3,4-dihydronaphthalen-1(2H)-one, C18H12F4O
  35. Crystal structure of bis(6-aminopyridine-2-carboxylato–k2O,N)-bis(N,N-dimethylformamide-k1 O)zinc(II), C18H24N6O6Zn
  36. Crystal structure of 5-(adamantan-1-yl)-3-[(4-{[2-(trifluoromethyl)phenyl]-methyl}piperazin-1-yl)methyl]-1,3,4-oxadiazole-2(3H)-thione, C25H31F3N4OS
  37. Crystal structure of tetrapropylammonium bicarbonate–1-(diaminomethylene)thiourea – water (2/2/1), C30H72N10O7S2
  38. Crystal structure of tris(2,2′-bipyridine-κ2 N,N′)iron(II) triiodide – dichloromethane (2/1), C61H50Cl2Fe2I12N12
  39. Crystal structure of 2-amino-3-[2-(1,3,3-trimethyl-1,3-dihydro-indol-2-ylidene)-ethylideneamino]-but-2-enedinitrile, C17H17N5
  40. The crystal structure of 1-(2-chlorophenyl)-3-cycloheptylurea, C14H19ClN2O
  41. Crystal structure of potassium bis(pentaselenido-κ 2 Se 1,Se 5)palladate(II), K2[Pd(Se5)2]
  42. The crystal structure of 5,10-bis(2-methoxyethyl)-5,10-dihydro-[1,2,3,4]tetrathiocino[5,6-b:8, 7-b′]diindole, C22H22N2O2S4
  43. The crystal structure of 4-(4-iodophenyl)-5H-1,2,3-dithiazole-5-thione, C8H4INS3
  44. Crystal structure of bis{μ2-(4-acetyl-phenoxy)acetato-κ2 O:O′}-bis{μ2-(4-acetyl-phenoxy)acetato-κ3 O,O′:O)- bis{(4-acetyl-phenoxy)acetato-κ2 O,O′}-bis(phenanthrolin-κ2 N,N′)didysprosium(III) tetrahydrate, C84H78N4O28Dy2
  45. Crystal structure of Eu2Pd3.37(1)Zn13.63(1)
  46. Crystal structure of 2-methoxy-4-(methoxy-carbonyl)phenyl 2-chloro-4-fluorobenzoate, C16H12ClFO5
  47. Crystal structure of catena-poly[bis(μ2-dicyanamide-κ2 N:N′)-bis(4-vinylpyridine-κN)-copper(II)], C18H14CuN8
  48. The crystal structure of iguratimod-dimethylformamide (1/1), C17H14N2O6S·C3H7NO
  49. Synthesis and crystal structure of 1-((3R,10S,13S,17S)-10,13-dimethyl-3-(m-tolylamino)hexadecahydro-1H-cyclopenta[α]phenanthren-17-yl)ethan-1-one, C28H41NO
  50. The crystal structure of diaqua-bis(4-bromo-2-formylphenoxy)zinc(II), C14H12Br2O6Zn
  51. The crystal structure of tetra(1-ethylimidazole-κ 1 N)-[μ 4-imidazole-4,5-dicarboxylato-κ 4 O, N, O′, N′]-trioxido-divanadium, C25H33N10O7V2
  52. The crystal structure of (E)-N′-(1-(4-fluorophenyl)propylidene)-2-hydroxybenzohydrazide, C16H15FN2O2
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