Startseite Naturwissenschaften Crystal structure of N-(adamantan-1-yl)-5-(dimethylamino)naphthalene-1-sulfonamide, C22H28N2O2S
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Crystal structure of N-(adamantan-1-yl)-5-(dimethylamino)naphthalene-1-sulfonamide, C22H28N2O2S

  • Jacques Joubert EMAIL logo
Veröffentlicht/Copyright: 11. September 2019

Abstract

C22H28N2O2S, monoclinic, P21/n (no. 14), a = 9.2516(7) Å, b = 10.5122(8) Å, c = 19.7782(15) Å, β = 98.9530(10)°, V = 1900.1(2) Å3, Z = 4, Rgt(F) = 0.0356, wRref(F2) = 0.1004, T = 100(2) K.

CCDC no.: 1949154

The molecular structure is shown in the figure (H atoms are omitted for clarity). Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Source of materials

A solution of dansyl chloride (systematic name: 5-(dimethylamino)naphthalene-1-sulfonyl chloride) (1.0 eq.) and amantadine (systematic name: 1-aminoadamantane; 1.0 eq.) in dichloromethane (DCM) (10 mL) was stirred in a sealed tube under microwave irradiation conditions (150 W, 373 K, 150 psi) for 10 min. The solvent was evaporated under reduced pressure and the residue was purified via repeated crystallization from ethanol at room temperature to afford the product. Yield 95%; 1H-NMR (400 MHz, CDCl3) δ/ppm = 8.53–8.51 (dd, J = 6.3, 2.2 Hz, 1H), 8.32–8.29 (dd, J = 6.3, 2.1 Hz, 1H), 8.25–8.23 (dd, J = 6.3, 2.1 Hz, 1H), 7.58–7.50 (m, 2H), 7.19–7.17 (dd, J = 6.4, 2.1 Hz, 1H), 2.90 (s, 6H), 1.95 (s, 3H), 1.74 (s, 6H), 1.59–1.48 (m, 6H); 13C-NMR (100 MHz, CDCl3) δ/ppm = 151.6, 138.7, 130.0, 129.9, 129.6, 129.0, 128.0, 123.4, 119.2, 115.0, 55.5, 45.5, 43.0, 35.8, 29.5. The title compound (10.0 mg) was dissolved in ethanol, and the solvent was evaporated slowly at ambient conditions. Crystals formed over a period of 3 days.

Table 1:

Data collection and handling.

Crystal:Colourless shard
Size:0.40 × 0.20 × 0.06 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.19 mm−1
Diffractometer, scan mode:Bruker APEX-II DUO, φ and ω
θmax, completeness:30.5°, >99%
N(hkl)measured, N(hkl)unique, Rint:60522, 5782, 0.039
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 5118
N(param)refined:250
Programs:Bruker [1], SHELX [2], X-Seed [3], [4], WinGX/ORTEP [5]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.14508(12)0.61431(11)0.60688(6)0.0162(2)
H1A0.1111910.6323050.5578470.019*
H1B0.1891050.6929460.6286580.019*
C20.01439(13)0.57337(12)0.64151(7)0.0205(2)
H2−0.0605630.6426670.6366520.025*
C30.06800(14)0.54803(15)0.71770(7)0.0286(3)
H3A0.1121410.6262580.7398960.034*
H3B−0.0155600.5232130.7406130.034*
C40.18177(14)0.44104(16)0.72476(6)0.0274(3)
H40.2167180.4246950.7744180.033*
C50.31256(13)0.48128(14)0.69008(6)0.0212(2)
H5A0.3584140.5586990.7124840.025*
H5B0.3867890.4127010.6949240.025*
C60.25962(11)0.50790(10)0.61396(5)0.01121(18)
C7−0.05386(13)0.45170(12)0.60823(6)0.0189(2)
H7A−0.1380540.4260790.6305080.023*
H7B−0.0900660.4673740.5591630.023*
C80.05972(13)0.34525(11)0.61546(6)0.0188(2)
H80.0146430.2663120.5931450.023*
C90.19056(13)0.38521(11)0.58088(6)0.0167(2)
H9A0.1573590.3996100.5314320.020*
H9B0.2644730.3163700.5857650.020*
C100.11244(14)0.31939(14)0.69147(7)0.0266(3)
H10A0.1852340.2496440.6966650.032*
H10B0.0288970.2933180.7140870.032*
C110.42199(11)0.79573(10)0.55727(5)0.01079(18)
C120.40813(12)0.89081(10)0.60349(5)0.01268(19)
H120.4410360.8771550.6508680.015*
C130.34528(12)1.00857(10)0.58094(6)0.0145(2)
H130.3383421.0746400.6130510.017*
C140.29411(12)1.02813(10)0.51283(6)0.0138(2)
H140.2508691.1074550.4982610.017*
C150.30502(11)0.93113(10)0.46381(5)0.01112(18)
C160.25293(11)0.95183(10)0.39230(5)0.01220(19)
C170.28194(12)0.86282(11)0.34488(5)0.0138(2)
H170.2520560.8780570.2974140.017*
C180.35586(12)0.74932(11)0.36682(6)0.0143(2)
H180.3772070.6897260.3336410.017*
C190.39766(12)0.72296(10)0.43492(5)0.01245(19)
H190.4423770.6436910.4484140.015*
C200.37448(11)0.81346(10)0.48535(5)0.01025(18)
C210.02252(14)1.05688(13)0.38842(7)0.0240(3)
H21A−0.0328540.9953800.3573340.036*
H21B−0.0242751.1405610.3819790.036*
H21C0.0243241.0290990.4358460.036*
C220.17367(14)1.10701(12)0.30315(6)0.0187(2)
H22A0.2748741.1134150.2944880.028*
H22B0.1262401.1903640.2962210.028*
H22C0.1203771.0452400.2715020.028*
N10.38407(10)0.53698(9)0.57701(5)0.01117(16)
H10.3742(18)0.5081(17)0.5354(9)0.024(4)*
N20.17296(10)1.06525(9)0.37360(5)0.01513(18)
O10.54260(9)0.66769(8)0.66343(4)0.01504(16)
O20.61620(8)0.61719(8)0.55114(4)0.01376(15)
S10.50335(3)0.65063(2)0.59084(2)0.01044(7)

Experimental details

Single-crystal X-ray intensity data were collected on a Bruker 3-circle Apex II DUO X-ray diffractometer equipped with an INCOATEC IμS HB microsource. Data collection and reduction were carried out using the Bruker software package APEX3 [1] using standard procedures. The structure was solved and refined using SHELX-2016 [2] employed within the X-Seed [3], [4] environment. Hydrogen atoms were placed in calculated positions using riding models. ORTEP-3 [5] was used to generate the publication material.

Comment

The title compound was investigated as part of an ongoing study into the development of adamantane conjugated fluorophores that could be used as potential neurobiological fluorescent ligands [6], [7]. The 5-dimethylamino-naphtalene sulfonyl (dansyl) moeity acts as the fluorophore [7], [8]. Continued development of fluorescent adamantane molecules is motivated by their good biological activity, e.g. as nitric oxide synthase inhibitors [6], [9], anti-oxidants [9], N-methyl-D-aspartate receptor antagonists and voltage-gated calcium channel blockers [7], [9], [10].

The bond lengths, angles and torsion angles of the adamantane ring system and the conjugated 5-dimethylamino-naphtalene sulfonyl moiety are consistent with previously published structures [11], [12], [13], [14]. The conformation of the investigated molecule is dependant on the sulfonylamide link, connecting the naphtalene ring and adamantane fragment. Two important torsion angles t1 [C6—N1—S1—C11, −77.19(10)°] and t2 [C12—C11—S1—N1, 115.88(9)°] describe the conformation of the molecule. Crystal packing analysis reveals that the molecules associate into cyclic dimers. These dimers are connected via a classical intermolecular hydrogen bond, N1—H1⋯O2i with an H⋯A distance of 2.38 Å, and an angle of 119.8°. Symmetry code: (i) −x + 1, −y + 1, −z + 1. The dimers are uniformly packed in the (ac) plane and create alternate stacking in the proximity of the (ac) plane.

References

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Received: 2019-06-12
Accepted: 2019-08-25
Published Online: 2019-09-11
Published in Print: 2019-11-26

©2019 Jacques Joubert, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

Artikel in diesem Heft

  1. Frontmatter
  2. Crystal structure of [aqua[2,2′-(1,2-phenylene)bis(1H-imidazole-4-carboxylato-5-carboxy)-κ4N3,N3,O4,O4] zinc(II)] monohydrate, C16H10N4O9Zn⋅H2O
  3. Crystal structure of ethyl 3-(4-methoxyphenyl)-5-methylcarbamoyl-1H-pyrazole-4-carboxylate, C15H17N3O4
  4. 7-(4-Fluorobenzylidene)-3-(4-fluorophenyl)-N-phenyl-3,3a,4,5,6,7-hexahydro-2H-indazole-2-carbothioamide–dimethylformamide (2/1), C27H23F2N3S, 0.5(C3H7NO)
  5. Crystal structure of 4,4′-(hydrazonomethylene)diphenol dihydrate, C13H16N2O4
  6. Crystal structure of 4-methoxyphenyl-3-phenylpropiolate, C16H12O3
  7. Crystal Structure of tris(tetrakis{1-vinyl-1H-imidazole-κN}copper(II)) bis[tri-μ2-bromido-tetrabromido-bis(1-vinyl-1H-imidazole-κN)tetracopper(I)], C80H96N32Cu11Br14
  8. Crystal structure of (E)-2-(3,6-bis(diethylamino)-9H-xanthen-9-yl)-N′-(quinoxalin-2-ylmethylene)benzohydrazide, C37H36N6O2
  9. Crystal structure of 4-(1-phenylimidazo[1,5-a]pyridin-3-yl)benzoic acid (C20H14N2O2)
  10. Crystal structure of 3-fluoro-3-methyl-1-((2-nitrophenyl)sulfonyl)-5,5-diphenylpiperidine, C24H23FN2O4S
  11. Crystal structure of dimethyl 3,12-dibenzyl-6,10-diphenyl-3,12-diazapentacyclo [6.3.1.02.7.04.11.05.9]-dodecane-7,11-dicarboxylate — acetone (2/1), C40H38N2O2 ⋅ 0.5C3H6O
  12. Crystal structure of poly[(μ2-2-(1H-1,2,4-triazol-1-yl)benzoato-κ4O:O′:N:N′)silver(I)] monohydrate, C9H8AgO3N3
  13. Crystal structure of poly[(μ2-9H-carbazole-3,6-dicarboxylate-κ4O1,O2:O3,O4)(μ2-1,3-di(pyridin-4-yl)propane-κ2N:N)cadmium(II)]monohydrate, C27H23N3O5Cd
  14. The synthesis and crystal structure of bis(2-(benzo[d]thiazol-2-yl)-5-methylbenzen-1-ido-κ2C,N)-(N,N′-diethyldithiocarbamato-κ2S,S′)iridium(III), C33H30N3S4Ir
  15. The crystal structure of 5-amino-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(trifluoromethylsulfonyl)-1H-pyrazole-3-carboxamide, C12H6N4Cl2F6O3S
  16. Synthesis and crystal structure of poly[(μ2-nitrato-κ4O,O′:O′,O′′)-nitrato-κO-(μ2-1,4-bis((1H-imidazol-1-yl)methyl)benzene-κ2N:N′)cadmium(II)], C14H14N6O6Cd
  17. Crystal structure of ethyl (Z)-(4-oxo-4-phenylbut-2-en-2-yl)glycinate, C14H17NO3
  18. Halogen bonds in the crystal structure of 5-bromo-3,4′-bipyridine – 1,4-diiodotetrafluorobenzene (2/1), C26H14Br2F4I2N4
  19. Crystal structure of bis(2,2′-bipyridine-κ2N,N′)-tetrakis(μ2-3-(phenylsulfonamido)propanoato-κ2O:O′)-bis(3-(phenylsulfonamido)propanoato-κ2O,O′)digadolinium(III) – 2,2′-bipyridine (1/1), C84H84Gd2N12O24S6
  20. Crystal structure of poly[aqua(μ2-2-amino-1,4-benzenedisulfonato-κ2O:O′)bis(μ2-pyrazin-κ2N:N′)silver(I)], C14H16Ag2N5O8S2
  21. The crystal structure of 1,6-di-tert-butyl-1,1,3,3,4,4,6,6-octamethyl-2,2,5,5-tetrakis (trimethylsilyl)hexasilane, C28H78Si10
  22. Crystal structure of discandium triruthenium tetrasilicide, Sc2Ru3Si4
  23. Crystal structure of poly[(μ2-4-amino-1,5-naphthalenedisulfonato-κ4O,N:O′, N′)bis(μ2-hexamethylenetetramino-κ2N;N′)silver(I)], {C22H30Ag2N9O6S2}n
  24. Crystal structure of diaqua[5,5′-dicarboxy-2,2′-(propane-1,3-diyl)bis(1H-imidazole-4-carboxylato-κ4O,O′,N,N′)]zinc(II) dihydrate, C13H18N4O12Zn
  25. The crystal structure of poly [(μ3-N1,N4-bis(pyridin-3-yl)cyclohexane-1,4-dicarboxamide-κ3-O:N:N′)-(p-toluenesulfonato-κ2O,O′)silver(I)], C25H27Ag1N4O5S
  26. The crystal structure of 1,2-bis(3-bromophenoxy) ethane, C14H12Br2O2
  27. The crystal structure of 4-(pyren-1-yl)butyl-3-nitrobenzoate, C27H21NO4
  28. Crystal structure of bis[(2-(4-chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylato-κ1O) (5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)]nickel(II), C40H60Cl2N4NiO8
  29. The crystal structure of 1,5-dinitro-2,3,4-trichlorobenzene, C6H1Cl3N2O4
  30. The crystal structure of the solid solution of 3,5-dinitropyrazole and 4-chlorine-3,5-dinitropyrazole, C3H1.24Cl0.76N4O4
  31. The cocrystal structure of 4-nitropyrazole — acetic acid (1/1), C5H7N3O4
  32. The crystal structure of propan-2-one O-(2,4,6-trinitrophenyl) oxime, C9H8N4O7
  33. The crystal structure of ethyl 2-(3-(2-ethoxy-2-oxoethyl)benzo[d] thiazol-2(3H)-ylidene)acetate, C15H17NO4S
  34. Crystal structure of (acetic acid-κ1O)-bis(μ2-2-chlorobenzoato-κ2O:O′)-(2-chlorobenzoato-κ1O)-(μ2-hydroxy-κ2O:O)-bis(1,10-phenanthroline-κ2N,N′)dimanganese(II) — methanol (1/1), C48H37Cl3Mn2N4O10
  35. Crystal structure of 3-methyl-2-phenyl-1,8-naphthyridine, C15H12N2
  36. Crystal structure of chlorido-(5-acetyl-2-(5-methylpyridin-2-yl)benzen-1-ido-κ2C,N)-pyridine-κN-palladium(II), C19H17ClN2OPd
  37. Crystal structure of (4-methyl-benzoato-κ2O,O′)-(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)nickel(II) perchlorate monohydrate, C24H45ClN4NiO7
  38. Crystal structure of (1,4,7,10,13,16-hexaoxacyclooctadecane-κ6O6) 1,2,3,4,5-pentamethyl-cyclopenta-2,4-dien-1-yl(potassium, rubidium) — ammonia (1/2), [K0.3Rb0.7(18-crown-6)]Cp*⋅2 NH3, C22H45K0.3N2O6Rb0.7
  39. Crystal structure of (3E,5E)-1-((4-fluorophenyl)sulfonyl)-3,5-bis(3-nitrobenzylidene)piperidin-4-one — dichloromethane (2/1), C51H38Cl2F2N6O14S2
  40. Crystal structure of (E)-N′-((1,6-dihydropyren-1-yl)methylene)isonicotinohydrazide — methanol (1/1), C24H19N3O2
  41. Crystal structure of poly[aqua(μ2-2-amino-1,4-benzenedisulfonato-κ3N,O:O′)-(μ4-hexamethylenetetramino-κ4N:N′:N′′:N′′′)disilver(I)] monohydrate, C12H21Ag2N5O8S2
  42. Crystal structure of bis(acridin-10-ium) 2,5-dihydroxyterephthalate — 2,5-dihydroxyterephthalic acid (1/1), C21H15NO6
  43. The crystal structure of 1,12-diazaperylene, C18H10N2
  44. Crystal structure of 1-(5-(4-chlorophenyl)-3-(2-fluorophenyl)-4,5-dihydro-1H-pyrazol-1-yl)ethan-1-one, C17H14N2OFCl
  45. Crystal structure of (4aR,6aR,6bR,10S,12aR)-10-acetoxy-1,2,3,4, 4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a, 12b,13,14b-icosahydro-2,2,4a,6b,9,9,12a-heptamethylpicene-6a-carboxylic acid, C32H50O4
  46. The crystal structure of tetrachlorido-bis{1,3-bis(2,6-diisopropylphenyl)-1H-3λ4-imidazol-2-yl}-(μ2-pyrimidine-κ2N:N′)dipalladium(IV) — dichloromethane (1/2), C60H80Cl8N6Pd2
  47. The crystal structure of (E)-4-(7-methoxy-2-oxo-2H-chromen-8-yl)-2-methylbut-2-en-1-yl 4-nitrobenzoate, C22H19NO7
  48. Crystal structure of 3-methyl-N-(pyrimidin-5-ylmethyl)pyridin-2-amine, C11H12N4
  49. The crystal structure of 2,5-dichloroterephthalic acid dihydrate, C8H8Cl2O6
  50. The crystal structure of 2,4,6-tris[4-(1H-imidazol-1-yl)phenyl]-1,3,5-triazine — dimethylformamide (1/1), C33H28N10O
  51. Crystal structure of N-(adamantan-1-yl)-5-(dimethylamino)naphthalene-1-sulfonamide, C22H28N2O2S
  52. Crystal structure of poly[diaqua-(μ4-4-(3,5-dicarboxy-κ1O-phenoxy)phthalato-κ3O:O′:O′)cadmium(II)], C16H12CdO11
  53. Crystal structure of poly[diaqua-bis(μ2-3-((1H-imidazol-1-yl)methyl)benzoato-κ2N:O)manganese(II)], C22H22MnN4O6
  54. Crystal structure of 9-(3-phenoxyphenyl)-3,4,6,7,9,10-hexahydroacridine-1,8(2H,5H)-dione, C25H23NO3
  55. The crystal structure of poly[(μ3-2,4,6-tris[4-(1H-imidazol-1-yl)phenyl]-1,3,5-triazine-k3N:N′:N′′)-(nitrato-k2O,O)-(nitrato-k1O)zinc(II)] - N,N-dimethylacetamide (1/2), C38H39N13O8Zn
  56. Crystal structure of poly[(μ7-4-(3,5-dicarboxylatophenoxy)phthalato)-(1,10-phenanthroline-κ2N,N′)dizinc(II)], C28H14N2O9Zn2
  57. The crystal structure of methyl 2-(benzylamino)-5-(benzyloxy)benzoate, C22H21NO3
  58. Crystal structure of (1,4,8,11-tetraazacyclotetradecane)palladium(II) tetracyanoplatinate(II), C14H24N8PdPt
  59. Crystal structure of (pyridine-2-carboxylato-κ2N,O)-[2-(2-pyridyl)phenyl-κ2N,C1]palladium(II), C17H12N2O2Pd
  60. Crystal structure of (cyclohexane-1,4-diammonium) 4-[(4-carboxylatophenyl)disulfanyl]benzoate dimethylsulphoxide hydrate (1/1/1/1), [C6H16N2]2+[C14H8O4S2]2−⋅C2H6OS⋅H2O
  61. Crystal structure of the 2:1 co-crystal 2-[(2-carboxyphenyl)disulfanyl]benzoic acid – 3-bromobenzoic acid, 2(C14H10O4S2)⋅C7H5BrO2
  62. Crystal structure of chlorido-dimethyl-(phenylpiperazine-1-carbodithioato-κ2S,S′)tin(IV), C13H19ClN2S2Sn
  63. Crystal structure of (N-n-butyl, N-methyl-dithiocarbamato-κ2 S,S′)-chlorido-dimethyl-tin(IV), C8H18ClNS2Sn
  64. Crystal structure of (2,2′-bipyridyl)bis(4-bromobenzyl)dibromidotin(IV), C24H20Br4N2Sn
  65. Crystal structure of (2,2′-bipyridyl)bis(4-chlorobenzyl)dichloridotin(IV), C24H20Cl4N2Sn
  66. Crystal structure of N-methyl-N-phenyl(methylsulfanyl)carbothioamide, C9H11NS2
  67. Crystal structure of 4-phenylpiperazin-1-ium (4-phenylpiperazin-1-yl)carbothioylsulfanide, [C10H15N2][C11H13N2S2]
  68. Crystal structure of catena-{di-aqua-sodium [n-butyl(methyl)carbamothioyl]sulfanide}n, [C6H16NNaO2S2]n
  69. Crystal structure of (2-([1,1-bis(hydroxymethyl)-2-oxyethyl]iminomethyl)-5-(n-decyl)phenolato)-dimethyl-tin(IV), C23H39NO5Sn
  70. Crystal structure of 4-chloro-N′-[(1E)-(3-ethoxy-2-hydroxyphenyl)methylidene]benzohydrazide – a Z′ = 3 structure, C16H15ClN2O3
Heruntergeladen am 6.12.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2019-0404/html
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