Home Physical Sciences Crystal structure of 3-(2-amino-1,3-selenazol-4-yl)-2H-chromen-2-one – dimethylformamide (1/1), C15H15N3O3Se
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Crystal structure of 3-(2-amino-1,3-selenazol-4-yl)-2H-chromen-2-one – dimethylformamide (1/1), C15H15N3O3Se

  • Nurul Zawani Alias , Wan Yaacob Wan Ahmad EMAIL logo , Nurul Izzaty Hassan , Bohari M. Yamin and Mohammad Fadzlee Ngatiman
Published/Copyright: May 4, 2017

Abstract

C15H15N3O3Se, triclinic, P1̅ (no. 2), a = 9.5686(7) Å, b = 12.3795(9) Å, c = 14.7854(11) Å, α = 93.844(2)°, β = 106.344(2)°, γ = 110.816(2)°, V = 1543.4(2) Å3, Z = 4, Rgt(F) = 0.0489, wRref(F2) = 0.1066, T = 300 K.

CCDC no.:: 1542163

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Dark red block
Size:0.50 × 0.49 × 0.48 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:24.5 cm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
2θmax, completeness:57°, >99%
N(hkl)measured, N(hkl)unique, Rint:52857, 7728, 0.082
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4768
N(param)refined:417
Programs:Bruker programs [1], SHELX [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Se10.68571(4)0.85803(3)0.33979(3)0.04634(12)
Se2−0.35364(4)0.06206(3)0.83165(3)0.05157(13)
O10.1012(3)0.44876(19)0.35694(18)0.0488(6)
O20.3386(3)0.4889(2)0.3510(2)0.0732(9)
O30.2536(3)0.47950(19)0.85285(17)0.0470(6)
O40.0094(3)0.4379(2)0.8474(2)0.0567(7)
O50.4493(4)0.8236(3)0.8821(3)0.0992(12)
O6−0.0475(4)0.1232(3)0.4061(3)0.0902(11)
N10.4604(3)0.8586(2)0.41660(18)0.0353(6)
N20.6505(4)1.0473(3)0.4351(2)0.0507(8)
N3−0.0459(3)0.0954(2)0.90750(18)0.0352(6)
N4−0.2162(4)−0.0862(3)0.9236(3)0.0527(8)
N50.2042(4)0.8100(3)0.8693(2)0.0508(8)
N60.1661(3)0.1283(3)0.3681(2)0.0486(7)
C1−0.0168(4)0.4795(3)0.3700(2)0.0420(8)
C2−0.1565(5)0.3905(4)0.3643(3)0.0583(10)
H2−0.16970.31230.35130.070*
C3−0.2765(5)0.4186(4)0.3780(3)0.0657(12)
H3−0.37100.35900.37540.079*
C4−0.2577(5)0.5349(4)0.3955(3)0.0643(11)
H4−0.34020.55320.40370.077*
C5−0.1186(4)0.6229(4)0.4009(3)0.0520(9)
H5−0.10690.70090.41320.062*
C60.0063(4)0.5974(3)0.3883(2)0.0384(7)
C70.1553(4)0.6830(3)0.3915(2)0.0353(7)
H70.17240.76220.40270.042*
C80.2717(4)0.6537(3)0.3789(2)0.0329(7)
C90.2459(4)0.5289(3)0.3615(3)0.0437(8)
C100.4216(4)0.7410(3)0.3776(2)0.0319(7)
C110.5888(4)0.9301(3)0.4054(2)0.0356(7)
C120.5199(4)0.7204(3)0.3351(2)0.0389(8)
H120.50590.64620.30690.047*
C130.3873(4)0.4553(3)0.8703(2)0.0418(8)
C140.5229(5)0.5437(4)0.8676(3)0.0588(10)
H140.52260.61550.85270.071*
C150.6585(5)0.5217(4)0.8878(3)0.0670(13)
H150.75160.57990.88690.080*
C160.6600(5)0.4152(4)0.9094(3)0.0615(11)
H160.75340.40270.92330.074*
C170.5239(4)0.3281(4)0.9102(3)0.0516(9)
H170.52490.25620.92400.062*
C180.3833(4)0.3469(3)0.8904(2)0.0390(8)
C190.2353(4)0.2617(3)0.8891(2)0.0364(7)
H190.22950.18720.89980.044*
C200.1040(4)0.2845(3)0.8732(2)0.0324(7)
C210.1131(4)0.4023(3)0.8570(2)0.0396(8)
C22−0.0482(4)0.1958(3)0.8702(2)0.0328(7)
C23−0.1867(4)0.0182(3)0.8956(2)0.0377(8)
C24−0.1914(4)0.1980(3)0.8289(2)0.0422(8)
H24−0.20700.26030.80210.051*
C250.0468(5)0.7364(4)0.8673(3)0.0719(13)
H25A0.03770.65650.86600.108*
H25B−0.02980.74060.81100.108*
H25C0.02810.76330.92350.108*
C260.2389(6)0.9318(4)0.8623(4)0.0859(16)
H26A0.33380.98060.91320.129*
H26B0.15260.95140.86730.129*
H26C0.25340.94430.80160.129*
C270.3141(5)0.7687(4)0.8796(4)0.0713(13)
H270.28690.69020.88550.086*
C280.1135(5)0.0022(3)0.3476(3)0.0674(12)
H28A0.0591−0.03150.39080.101*
H28B0.2032−0.01860.35550.101*
H28C0.0430−0.02740.28280.101*
C290.3144(5)0.2000(4)0.3568(4)0.0705(12)
H29A0.33600.28160.37570.106*
H29B0.30770.18480.29090.106*
H29C0.39790.18130.39640.106*
C300.0803(5)0.1763(4)0.3969(3)0.0680(12)
H300.12070.25800.41170.082*
H2A0.616(4)1.077(3)0.474(2)0.064(13)*
H4A−0.138(4)−0.093(4)0.964(3)0.088(16)*
H2B0.736(3)1.089(3)0.425(3)0.058(12)*
H4B−0.309(2)−0.129(3)0.923(3)0.064(13)*

Source of material

3-(2-Bromo-acetyl)-chromen-2-one (0.05 mol) and selenourea (0.05 mol) were dissolved in 5 mL methanol-water (1 : 1) contaning 0.08 g NaF. The mixture was stirred at room temperature for 30 minutes. After the completion of the reaction, water (10 mL) was added to the reaction mixture and extracted with ethyl acetate. The organic layer was dried over anhydrous Na2SO4. The solvent was evaporated under reduced pressure and the resulting product was further purified by column chromatography (hexane:ethyl acetate, 7 : 3) [3, 4] . Single crystals suitable for X-ray structure analysis were obtained by dissolving the compound in methanol and DMF. Then, the solvents were concentrated using a rotary evaporator. The mixture was cooled to room temperature and allowed to rest overnight. The title compound formed reddish brown parallelepipeds in a yield of 50%.

Experimental details

The C—H atoms were constrained to an ideal geometry, with C—H distances of 0.93–0.96 Å. The Uiso values of the hydrogen atoms of the methyl groups were set to 1.5Ueq(Cmethyl) and the Uiso values of all other hydrogen atoms were set to 1.2Ueq(C). Nitrogen-bound hydrogen atoms were refined freely.

Comment

Organoselenium compounds have attracted great interest due to their potential application as anticancer, antioxidant, enzyme modulators, antitumors, antimicrobials, antihypertensive agents and cytokine inducers [3], [4], [5]. The title compound also constitutes a coumarin moiety [6], which is known to exhibit wide range of medical applications such as an inhibitor of Alzheimer’s disease [7]. In continuation of our interest in the development of organoselenium compounds, herein we report the structure of a coumaryl 1,3-selenazole.

The asymmetric unit of the crystal structure contains two independent C12H8N2O2Se molecules and two molecules of dimethylformamide (cf. the figure). All bond lengths in the molecule are within normal ranges. The C—Se lengths are in the range of 1.851(3)–1.891(3) Å. The coumarin ring and the 2-amino-1,3-selenazole ring are syn-periplanar to each other with a torsion angle of C(9)—C(8)—C(10)—C(12) to be 20.9(5)°. In addition, classical hydrogen bond exists between 3-(2-amino-1,3-selenazol-4-yl)-2H-chromen-2-one and DMF molecules.

Acknowledgement

The authors would like to thank the Ministry of Higher Education Malaysia, and the Universiti Kebangsaan Malaysia and Universiti Teknologi MARA (UiTM) Perlis for research grant DIP-2015-015 and FRGS/1/2015/SG01/UITM/03/1.

References

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3 Kieliszek, M.; Blazejak, S.: Selenium: significance and outlook for supplementation. Nutrition 29 (2013) 713–718.10.1016/j.nut.2012.11.012Search in Google Scholar PubMed

4 Fernandes, A. P.; Gandin, V.: Selenium compounds as therapeutic agents in cancer. Biochim. Biophys. Acta 1850 (2015) 1642–1660.10.1016/j.bbagen.2014.10.008Search in Google Scholar PubMed

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Received: 2016-11-16
Accepted: 2017-4-12
Published Online: 2017-5-4
Published in Print: 2017-7-26

©2017 Nurul Zawani Alias et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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  61. Corrigendum
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