Home Physical Sciences Important impurity of Flupirtine – a single crystal study on ethyl (6-amino-5-((ethoxycarbonyl)amino)pyridin-2-yl)(4-fluorobenzyl)carbamate, C18H21FN4O4
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Important impurity of Flupirtine – a single crystal study on ethyl (6-amino-5-((ethoxycarbonyl)amino)pyridin-2-yl)(4-fluorobenzyl)carbamate, C18H21FN4O4

  • Kun-Yan Wang EMAIL logo and Xiao-Li Yang
Published/Copyright: May 31, 2017

Abstract

C18H21FN4O4, monoclinic, P21/n (no. 14), a = 9.4973(8) Å, b = 12.8420(11) Å, c = 15.3050(15) Å, β = 103.468(4)°, V = 1815.3(3) Å3, Z = 4, Rgt(F) = 0.0525, wRref(F2) = 0.1049, T = 296(2) K.

CCDC no.:: 1546441

The molecular structure of the title compound together with a symmetry related hydrogen bonded one is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless block
Size:0.29 × 0.18 × 0.12 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.1 cm−1
Diffractometer, scan mode:PHOTON100 CMOS, ω scans
2θmax, completeness:50.6°, 99%
N(hkl)measured, N(hkl)unique, Rint:9199, 3281, 0.061
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2147
N(param)refined:302
Programs:CAD-4 [1], XCAD-4 [2], SHELX [3, 4]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.7383(2)0.43485(17)0.66649(15)0.0192(5)
C20.7452(2)0.40704(18)0.75377(15)0.0225(5)
H20.83510.40530.79680.027*
C30.6167(2)0.38142(18)0.77762(15)0.0222(5)
H30.61810.36120.83750.027*
C40.4875(2)0.38551(17)0.71416(14)0.0182(5)
C50.4896(2)0.42064(17)0.62640(14)0.0176(5)
C60.9564(2)0.38959(19)0.61642(14)0.0227(5)
C70.9925(3)0.21082(19)0.59230(16)0.0296(6)
H7A1.08270.20750.64020.036*
H7B1.01850.22400.53430.036*
C80.9106(3)0.1107(2)0.58825(19)0.0411(7)
H8A0.88580.09840.64610.062*
H8B0.97060.05330.57530.062*
H8C0.82160.11490.54070.062*
C90.9180(3)0.57061(18)0.65325(16)0.0266(6)
H9A0.83550.61840.63160.032*
H9B0.99110.58460.61800.032*
C101.0958(3)0.6212(2)0.93177(18)0.0442(8)
C110.9614(3)0.6597(2)0.89452(18)0.0396(7)
H110.90780.69640.92990.048*
C120.9055(3)0.64393(19)0.80403(17)0.0306(6)
H120.81120.66890.77730.037*
C130.9836(2)0.59248(18)0.75109(16)0.0245(6)
C141.1210(3)0.5559(2)0.79206(18)0.0344(6)
H141.17670.52090.75700.041*
C151.1776(3)0.5699(2)0.88321(19)0.0425(7)
H151.27110.54440.91120.051*
F11.1522(2)0.63555(16)1.02208(11).0715(6)
N10.61415(19)0.44371(14)0.60388(12)0.0192(4)
N20.86732(19)0.46238(15)0.63776(12)0.0213(5)
N30.3536(2)0.35416(16)0.73026(13)0.0231(5)
H3A0.280(3)0.3542(19)0.6858(16)0.028*
N40.3666(2)0.42961(18)0.56009(14)0.0292(5)
H4A0.373(3)0.4639(19)0.5099(17)0.035*
H4B0.286(3)0.431(2)0.5725(16)0.035*
O10.89920(16)0.29366(12)0.61133(10)0.0270(4)
O21.07529(16)0.40864(13)0.60204(10)0.0293(4)
C16a0.3291(8)0.3220(8)0.8094(5)0.0302(16)
O3a0.1955(8)0.2802(12)0.942(6)0.0330(18)
O4a0.4105(7)0.3318(8)0.8818(3)0.0489(18)
C17a0.1434(7)0.2603(7)0.8769(4)0.0356(15)
H17Aa0.11190.32580.90070.043*
H17Ba0.22020.22780.92390.043*
C18a0.0173(12)0.1869(11)0.8466(10)0.040(2)
H18Aa−0.06110.22300.80460.060*
H18Ba−0.01730.16350.89890.060*
H18Ca0.04840.12660.81670.060*
C16′b0.3340(16)0.3099(15)0.8072(9)0.031(3)
O3′b0.1921(16)0.290(3)0.8021(13)0.033(2)
O4′b0.4290(13)0.2862(10)0.8722(7)0.032(2)
C17′b0.1713(13)0.2144(14)0.8734(8)0.038(2)
H17Cb0.21870.14710.86690.046*
H17Db0.21290.24250.93420.046*
C18′b0.013(2)0.201(3)0.859(2)0.045(5)
H18Db−0.03520.26850.84730.068*
H18Eb−0.00950.16970.91280.068*
H18Fb−0.02230.15460.80740.068*
  1. aOccupancy: 0.670(15); bOccupancy: 0.330(15).

Source of material

The title compound can be easily synthesized according to a known patent [5]. To a solution of 2,3-diamino-6-(4-fluorobenzylamino)pyridine (10 g, 43.11 mmol) in degassed ethyl acetate (100 mL) were added ethyl carbonochloridate (5.6 g, 51.73 mmol) and triethylamine (5.7 g, 56.03 mmol) slowly in 1 h. The mixture was stirred under nitrogen for 4 h at 40 °C before the solvent was removed in vacuum. The crude product was purified by flash chromatography on silica gel eluting with 0% increasing to 5% methanol in dichloromethane. The product was obtained as a pale yellow solid (811.3 mg, 5%). In a typical experiment 0.1 g of the title compound was dissolved in 6 mL methanol. Evaporation at room temperature yielded colourless crystals of the title compound.

Experimental details

All hydrogen atoms were identified in difference Fourier syntheses. The hydrogen atoms were placed on calculated positions with the SHELX program (AFIX 43, 23 or 137 option) [4] and refined using a riding model: N—H = 0.86 Å, C—H = 0.93 and 0.96 Å for aromatic and CH3 H atoms, respectively, with Uiso(H) = k times Ueq(N,C), where k = 1.5 for CH3 H atoms and k = 1.2 for other H atoms.

Comment

The title compound, is an important impurity of Flupirtine. It is a by-product of chloroacetylation of the synthetic protocol [5]. Flupirtine is an aminopyridine that acts as a centrally acting non-opioid analgesic. This drug has been originally used as an analgesic for acute and chronic pain. It has been shown that Flupiritine is a neuronal potassium channel opener (SNEPCO) [6].

The bond lengths and angles in the title structure are within normal ranges [7]. The title compound is composed of two rings, a 4-fluoro phenyl moiety (C10—C11—C12—C13—C14—C15) and a pyridyl core (C1—C2—C3—C4—C5—N1). The latter is not exactly planar. The dihedral angle between the two ring systems is 45.4(2)°. In the crystal of the title compound, there are intermolecular N–H⋯N hydrogen bonds which link adjacent molecules pairwise. In the crystal structure, there are additional weak π-π stacking interactions.

Acknowledgement

This work is supported by PhD Research Startup Foundation of Jinling Institute of Technology (JIT-B-201323, JIT-B-201211, JIT-B-201601). We also thank the Center of Testing and Analysis, Nanjing University.

References

1 Enraf-Nonius. CAD-4 Software. Version 5.0. Enraf-Nonius, Delft, The Netherlands (1985).Search in Google Scholar

2 Harms, K.; Wocadlo, S.: XCAD4. University of Marburg, Germany (1995).Search in Google Scholar

3 North, A. C. T.; Phillips, D. C.; Mathews, F. S.: A semi-empirical method of absorption correction. Acta Crystallogr. A24 (1968) 351–359.10.1107/S0567739468000707Search in Google Scholar

4 Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

5 Martin, S. J.; Garnett, A.: Process for the preparation of flupirtine maleate. WO 2012/004391 A1.Search in Google Scholar

6 Kumar, R.; Kesheri, U. P.; Sharma, J.: Flupirtine: a mini review. J. Drug Deliv. Ther. 3 (2013) 113–116.10.22270/jddt.v3i6.705Search in Google Scholar

7 Allen, F. H.; Kennard, O.; Watson, D. G.; Brammer, L.; Orpen, A. G.; Taylor, R.: Tables of bond lengths determined by X-ray and neutron diffraction. J. Chem. Soc. Perkin Trans. 2 (1987) S1–S19.10.1039/p298700000s1Search in Google Scholar

Received: 2016-12-21
Accepted: 2017-5-3
Published Online: 2017-5-31
Published in Print: 2017-7-26

©2017 Kun-Yan Wang et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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  1. Cover and Frontmatter
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  53. Important impurity of Flupirtine – a single crystal study on ethyl (6-amino-5-((ethoxycarbonyl)amino)pyridin-2-yl)(4-fluorobenzyl)carbamate, C18H21FN4O4
  54. Crystal structure of ethyl 3-(4-methoxyphenyl)-1-(2-(4-methoxyphenyl)-2-oxoethyl)-1H-pyrazole-5-carboxylate, C22H22N2O5
  55. Crystal structure of 2,3,9,10-tetramethoxy-5,6-dihydroisoquinolino[2,1-b]isoquinolin-7-ium 5-hydroxy-3-(4-hydroxyphenyl)-4-oxo-4H-chromen-7-olate methanol solvate, C37H35N1O10
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  57. Crystal structure of (8-hydroxy-5-nitroquinolinium) perchlorate – 8-hydroxy-5-nitroquinoline (1/1), C18H13ClN4O10
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  60. Crystal structure of the triclinic modification of 1-methyl-4-nitroimidzole, C4H5N3O2
  61. Corrigendum
  62. Crystal structure of 4-bromo-2-(1H-pyrazol-3-yl)phenol, C9H7BrN2O
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