Home Crystal structure of ent-1β,7α,11α-trihydroxy-7β,20-epoxykaur-16-en-15-one, C20H28O5
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Crystal structure of ent-1β,7α,11α-trihydroxy-7β,20-epoxykaur-16-en-15-one, C20H28O5

  • Lai-Xiang Xin , Jing-Jie Zhang EMAIL logo , Jiang-Hai Ye , Chen-Liang Zhao and Lu-Tai Pan
Published/Copyright: April 28, 2016

Abstract

C20H28O5, orthorhombic, P212121 (no. 19), a = 8.435(3) Å, b = 11.693(4) Å, c = 18.015(6) Å, V = 1776.9(11) Å3, Z = 4, Rgt(F) = 0.0364, wRref(F2) = 0.0933, T = 293(2) K.

CCDC no.:: 1472349

Tables 13 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless, block, size 0.24×0.25×0.27 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.92 cm−1
Diffractometer, scan mode:Bruker APEX II, φ and ω scan
2θmax:50°
N(hkl)measured, N(hkl)unique:8222, 3070
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2854
N(param)refined:235
Programs:SHELX [1]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomSitexyzUiso
H(1)4a0.42840.25790.20250.039
H(2A)4a0.45750.05880.20570.054
H(2B)4a0.59760.06750.14860.054
H(3A)4a0.69880.05520.26930.059
H(3B)4a0.60220.16390.29260.059
H(5)4a0.67920.35720.23290.035
H(6A)4a0.86790.46550.19620.040
H(6B)4a0.96840.35950.17060.040
H(9)4a0.51940.46310.16020.032
H(11)4a0.40290.38200.02210.040
H(12A)4a0.31470.60260.06840.052
H(12B)4a0.28970.5484−0.01020.052
H(13)4a0.49720.6586−0.04350.059
H(14A)4a0.73980.5571−0.03160.050
H(14B)4a0.61010.4594−0.0340.050
H(17A)4a0.61980.83540.11570.090
H(17B)4a0.50620.84640.04410.090
H(18A)4a0.97500.28880.28850.088
H(18B)4a0.92380.17410.32670.088
H(18C)4a0.81500.28240.33260.088
H(19A)4a1.00470.18260.16770.086
H(19B)4a0.86340.10900.13760.086
H(19C)4a0.95450.07050.20920.086
H(20A)4a0.70910.17860.06370.040
H(20B)4a0.60980.26710.01750.040
H(1O)4a0.380(3)0.172(2)0.0701(9)0.049
H(3O)4a1.044(2)0.464(2)0.074(1)0.051
H(5A)4a0.253(3)0.336(1)0.109(1)0.049
Table 3:

Fractional coordinates and atomic displacement parameters (Å2).

AtomSitexyzU11U22U33U12U13U23
C(1)4a0.4760(2)0.2196(2)0.15953(9)0.0290(9)0.0385(9)0.0295(8)−0.0038(7)0.0015(7)−0.0006(7)
C(2)4a0.5434(3)0.1071(2)0.1885(1)0.045(1)0.038(1)0.053(1)−0.0056(9)0.005(1)0.0093(9)
C(3)4a0.6587(3)0.1282(2)0.2518(1)0.046(1)0.050(1)0.052(1)−0.001(1)−0.001(1)0.021(1)
C(4)4a0.7999(2)0.2048(2)0.2299(1)0.034(1)0.048(1)0.040(1)0.0048(9)−0.0010(8)0.0153(9)
C(5)4a0.7329(2)0.3157(2)0.19289(9)0.0232(8)0.0358(9)0.0278(8)0.0018(7)0.0004(6)0.0004(7)
C(6)4a0.8665(2)0.3971(2)0.1658(1)0.0224(8)0.0399(9)0.0380(9)−0.0014(7)−0.0071(7)0.0055(7)
C(7)4a0.8386(2)0.4292(2)0.08551(9)0.0217(8)0.0361(9)0.0349(8)−0.0003(7)0.0010(7)0.0040(7)
C(8)4a0.6839(2)0.4958(2)0.07533(9)0.0201(8)0.0376(9)0.0325(8)0.0001(7)0.0012(7)0.0076(7)
C(9)4a0.5433(2)0.4263(1)0.11262(9)0.0192(8)0.0345(8)0.0267(7)−0.0002(7)−0.0001(6)−0.0004(7)
C(10)4a0.6050(2)0.3020(1)0.12999(8)0.0245(8)0.0311(8)0.0274(8)0.0021(7)0.0002(6)−0.0014(7)
C(11)4a0.3929(2)0.4364(2)0.0632(1)0.0219(8)0.044(1)0.0346(9)0.0007(7)−0.0020(7)0.0000(8)
C(12)4a0.3638(2)0.5552(2)0.0307(1)0.0244(9)0.060(1)0.047(1)0.0071(9)−0.0047(8)0.0113(9)
C(13)4a0.5161(2)0.6159(2)0.0025(1)0.035(1)0.063(1)0.049(1)0.008(1)0.0016(9)0.029(1)
C(14)4a0.6476(2)0.5256(2)−0.0067(1)0.0257(9)0.062(1)0.0380(9)0.0028(9)0.0027(8)0.0160(9)
C(15)4a0.6832(2)0.6152(2)0.1116(1)0.0253(9)0.0341(9)0.056(1)−0.0030(8)0.0050(9)0.0065(8)
C(16)4a0.5842(2)0.6908(2)0.0628(1)0.032(1)0.041(1)0.076(1)0.0035(8)0.008(1)0.021(1)
C(17)4a0.5685(3)0.8019(2)0.0755(2)0.054(1)0.048(1)0.124(2)0.007(1)0.010(2)0.027(2)
C(18)4a0.8865(3)0.2409(2)0.3011(1)0.046(1)0.081(2)0.049(1)0.000(1)−0.012(1)0.023(1)
C(19)4a0.9167(3)0.1351(2)0.1815(1)0.046(1)0.055(1)0.071(2)0.018(1)0.007(1)0.018(1)
C(20)4a0.6833(2)0.2591(2)0.05853(9)0.0287(9)0.0372(9)0.0330(9)0.0005(7)0.0043(7)−0.0028(7)
O(1)4a0.3475(2)0.1970(1)0.10901(7)0.0331(7)0.0508(8)0.0387(7)−0.0129(6)−0.0011(6)−0.0056(6)
O(2)4a0.8265(1)0.3233(1)0.04285(6)0.0274(6)0.0440(7)0.0355(6)0.0025(5)0.0086(5)−0.0020(5)
O(3)4a0.9621(1)0.4903(1)0.05328(8)0.0203(6)0.0529(8)0.0554(8)−0.0012(6)0.0027(6)0.0195(7)
O(4)4a0.7428(2)0.6430(1)0.17051(9)0.0480(8)0.0450(8)0.071(1)−0.0030(7)−0.0106(8)−0.0112(7)
O(5)4a0.2509(1)0.4092(1)0.10400(7)0.0189(6)0.0495(8)0.0530(8)−0.0001(6)0.0013(6)0.0038(7)

Source of material

The dried leaves and stems of isodon coetsa were extracted with ethyl acetate and filtered three times. The combined filtrate was concentrated and extracted with dichloromethane. The crude extract was separated by silica gel column with dichloromethane/acetone (8:2) and purified by reverse phase high pressure liquid chromatography to give the title compound Rabdocoetsin A. Colourless block-shaped crystals of this compound were obtained from recrystallization from methanol after three days [2].

Experimental details

The carbon-bound hydrogen atoms are positioned geometrically and constrained to ride on their parent atoms with C—H = 0.93 Å (aryl), C—H = 0.97 Å and Uiso(H) = 1.2Ueq(C) (methylene), and with C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C) (methyl). The hydrogen atoms at the OH groups are refined freely.

Discussion

Plants of isodon coetsa (Buch-Ham. ex D. Don) H. Hara, which have a wide range of treatment wounds and trauma as traditional chinese medicine is generally distributed in the Guizhou province [2, 3]. Its active ingredients have attracted more attention, particularly in the field of phytochemistry, according to the pharmacological applications. The bond lengths and angles which were derived from the title structure are within normal ranges. The title structure contains one alkenyl, one keto, and three methyl groups, respectively. It was distinctly identified by the distances d(C16—C17) = 1.326(4) Å, d(C15—O4) = 1.218(3) Å, d(C7—O3) = 1.389(2) Å, d(C1—O1) = 1.440(2) Å and d(C11—O5) = 1.440(2) Å. Especially, the oxo-bridge was determined by the distances d(C20—O2) = 1.450(2) Å, d(C7—O2) = 1.462(2) Å. The title compound contains one five-membered ring and three six membered rings (cf. the figure). One intramolecular hydrogen bond (O1⋯O5: 2.613(2) Å) and two crystallographically independent intermolecular ones (O1⋯O2′: 2.752(2) Å and O3⋯O5′′: 2.770(2) Å; ′ = 0.5+x, 0.5−y,−z; ′′ = 1+x, y, z) are present.

Award Identifier / Grant number: 81160496

Funding statement: The authors gratefully acknowledge support from The National Natural Science Foundation of China [No.81160496] and the Science and Technology Fund of Guizhou [No.LH(2014)7333].

Acknowledgements.

The authors gratefully acknowledge support from The National Natural Science Foundation of China [No.81160496] and the Science and Technology Fund of Guizhou [No.LH(2014)7333].

References

1. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar

2. Xu, Y. L.; Kubo, I.: Diterpenoid constituents from rabdosia coetsa. Phytochemistry 34 (1993) 576–578.10.1016/0031-9422(93)80051-SSearch in Google Scholar

3. Wu, C. Y.; Li, H. W.: In flora reipublicae popularis sinicae. Beijing Academic Press, Beijing 66 (1977) 494.Search in Google Scholar

Received: 2015-12-24
Accepted: 2016-4-5
Published Online: 2016-4-28
Published in Print: 2016-9-1

©2016 Lai-Xiang Xin et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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  70. Crystal structure of 1α,7β-dihydroxy-11β-acetoxy-ent-7β,20-epoxykaur-16-en-15-one, C22H30O6
  71. Crystal structure of 7β,14β,15β-trihydroxy-1α-acetoxy-7α,20-epoxy-ent-kaurane, C22H32O6
  72. Crystal structure of ent-1β,7α,11α-trihydroxy-7β,20-epoxykaur-16-en-15-one, C20H28O5
  73. Crystal structure of poly-[tetraaquabis(μ8-benzene-1,2,4,5-tetracarboxylato-1κ3O4:O6:O8:2κ4O2:O2:O5:O5:3κ4O1:O3:O5:O7)(di-μ3-hydroxido)-pentazinc(II)] decahydrate, C20H34O32Zn5
  74. Crystal structure of 1-(4-methylthiazol-2-yl)-3-propylthiourea, C8H13N3S2
  75. Crystal structure of 2-((dimethylamino)methylene)-5,5-Dimethylcyclohexane-1,3-dione, C11H17NO2
  76. Crystal structure of poly[1,4-bis(2-methylbenzimidazol)butane-κ2N:N′)bis(4,4′-oxybis(benzoato-κ4O,O′:O′′,O′′′)dicadmium] monohydrate, C48H38Cd2N4O10
  77. Crystal structure of 2-(3-(benzofuran-2-yl)-5-(4-fluorophenyl)-4,5-dihydro-1H-pyrazol-1-yl)-4-(4-chlorophenyl)thiazole, C26H17ClFN3OS
  78. Crystal structure of bis(μ3-isophthalato-κ3O:O′:O′′)(μ2-1,4-\ bis((2-propyl-1H-benzo[d]imidazol-1-yl)methyl)benzene-κ2N:N′)dizinc(II), C22H19N2O4Zn
  79. Crystal structure of poly[bis(adipate-κ4O,O′:O′′, O′′′)(1,4-bis(2-methyl-1H-benzo[d]imidazol-1-yl)benzene-κ2N:N′)dizinc(II), C36H38N4O8Zn2
  80. Crystal structure of N-(2-(2-oxoindolin-4-yl)ethyl)-N-propylpropan-1-aminium tetraphenylborate, C40H45BN2O
  81. Crystal structure of 1-(2,3-dihydro-4-methyl-3-phenyl-2-thioxothiazol-5-yl)-1-ethanone, C12H11NOS2
  82. Crystal structure of 3-(adamantan-1-yl)-1-[(4-benzylpiperazin-1-yl)methyl]-4-[(E)-(2,6-difluorobenzylidene)amino]-1H-1,2,4-triazole-5(4H)-thione, C31H36F2N6S
  83. Crystal structure of 6-(4-chlorophenyl)-3-(thiophen-2-yl)-[1,2,4]triazolo[3,4-b][1,3,4]-thiadiazole, C13H7ClN4S2
  84. Crystal structure of bis(ethanaminium) poly[bis(hexaselenido-κ2Se1,Se6)palladate(II)], C4H16N2PdSe12
  85. Crystal structure of 2-(3-(benzofuran-2-yl)-5-phenyl-4,5-dihydro-1H-pyrazol-1-yl)-4-phenylthiazole, C26H19N3OS
  86. Crystal structure of poly-[bis(μ3-5-hydroxyisophtalato-κ3O:O′:O′′)(μ2-1,4-bis(2-ethylbenzimidazol-1-ylmethyl)benzene-κ2N:N′)dizinc(II)], C40H30N4O5Zn2
  87. Crystal structure of poly-[(μ-1,4-bis(2-ethylbenzimidazol-1-ylmethyl)benzene-κ2N:N′)-bis(μ4-2,2′-(1,3-phenylene)diacetate-κ4O:O′:O′′:O′′′)dizinc(II)], C44H38N4O8Zn2
  88. Crystal structure of 5,17-bis-cyano-25,26,27,28-tetrapropyloxy-calix[4]arene, C42H46N2O4
  89. Crystal structure of poly-[μ-1,4-bis(2-ethylbenzimidazol-1-ylmethyl)benzene-κ2N:N′)-bis(μ3-5-hydroxyisophthalate(2–)-κ3O,O′:O′′)dicadmium(II)] monohydrate, C64H54N8O11Cd2
  90. Crystal structure of poly-[μ-1,4-bis(2-ethylbenzimidazol-1-ylmethyl)benzene-κ2N:N′)-bis(μ4-4,4′-sulfonyldibenzoato-κ4O:O′:O′′:O′′′)dicadmium(II)] monohydrate, C52H42N4O14Cd2
  91. Crystal structure of poly-[bis(μ4-adipato-κ4O:O′:O′′:O′′′)(μ2-1,4-bis((2-ethyl-1H-benzo[d]imidazol-1-yl)methyl)benzene-κ2N:N′)dizinc(II)], C38H42N4O8Zn2
  92. Crystal structure of (2-(2-chlorophenyl)-5-methyl-1,3-dioxan-5-yl)methanol, C12H15ClO3
  93. Crystal structure of 2-(4-Bromophenyl)-5-ethyl-1,3-dioxane-5-carboxylic acid, C13H15BrO4
  94. Crystal structure of (2-(4-bromophenyl)-5-ethyl-1,3-dioxan-5-yl)methanol, C13H17BrO3
  95. Crystal structure of 3-((1,3,5,7-tetraoxo-6-(pyridin-3-ylmethyl)-3,3a,4,4a,5,6,7,7a,8,8a-decahydro-4,8-ethenopyrrolo[3,4-f]isoindol-2(1H)-yl)methyl)pyridin-1-ium-κN-trichloridocobalt(II) hemihydrate, C24H22Cl3CoN4O4.5
  96. Crystal structure of 4-chloro-4′,6′-dichloro-2,2′-[propane-1,3-diyldioxybis(nitrilomethylidyne)]-diphenol, C17H14Cl3N2O4
  97. Crystal structure of 2-amino-4-(3-trifluoromethylphenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carbonitrile, C17H13F3N2O2
  98. Crystal structure of bis(benzoato-κO)bis(4,4′-((1H-1,2,4-triazol-1-yl)methylene)dibenzonitrile-κN)zinc(II), C48H32N10O4Zn
  99. Crystal structure of 3-methyl-2H-chromen-2-one, C10H8O2
  100. Crystal structure of catena-poly-[aqua-(2-carboxy-5-(3-carboxy-5-carboxylatophenoxy)benzoato-κO)(μ2-4,4′-di(1H-imidazol-1-yl)-1,1′-biphenyl-κ2N:N′)cobalt(II)], C34H24N4O10Co
  101. Crystal structure of 4,4′-di(1H-imidazol-1-yl)-1,1′-biphenyl, C36H28N8
  102. Crystal structure of 1-(3-chloropropyl)piperidin-1-ium tetraphenylborate, C32H37BClN
  103. Crystal structure of dimethyl 5-(benzylamino)isophthalate, C17H17NO4
  104. Crystal structure of dimethyl 5-(dibenzylamino)isophthalate, C24H23NO4
  105. Crystal structure of N-(adamantan-1-yl)-4-phenylpiperazine-1-carbothioamide, C21H29N3S
  106. Crystal structure of (2,2′(cyclohexane-1,2-diylbis(nitrilo(E)methylylidene))diphenolato-κ4O,O′,N,N′)dimethanolmanganese(III) bromide, C22H28BrMnN2O4
  107. Crystal structure of 3,5,7-tris(morpholinomethyl)tropolone·0.67 hydrate, C22H33N3O5·0.67H2O
  108. Crystal structure of biphenyl-2,3′,5,5′-tetracarboxylic acid – 4,4′-biphenyl-4,4′-diyldipyridine (3/2), C49H34N3O8
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