Home Physical Sciences A study on the coordination of cyclohexanocucurbit[6]uril with copper, zinc, and magnesium ions
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A study on the coordination of cyclohexanocucurbit[6]uril with copper, zinc, and magnesium ions

  • Jun Zheng , Lin Zhang , Xinan Yang , Yanmei Jin , Jie Gao and Peihua Ma EMAIL logo
Published/Copyright: December 7, 2021
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Abstract

Herein, we report the supramolecular complexes of cyclohexanocucurbit[6]uril (CyH6Q[6]) with Cu(ClO4)2, Zn(ClO4)2, and Mg(ClO4)2 in formic acid solution. The crystal structure was determined using single crystal X-ray diffraction. The analysis results showed that CyH6Q [6] formed a one-dimensional supramolecular chain with Cu(ClO4)2 and formed a supramolecular assembly with a mixture ratio of 2:3 with Zn(ClO4)2 and Mg(ClO4)2. In this system, ClO 4 induced CyH6Q[6] and metal ions to form supramolecular complexes through ion–dipole interactions.

Graphical abstract

1 Introduction

Cucurbit[n]uril [1,2,3,4,5,6,7,8,9,10,11,12,13] is the fourth generation of macrocyclic compounds after cyclodextrin, crown ether, and calixarene. In 1905, German chemists Behrend et al. obtained a white solid compound through the reaction of glycoluril and paraformaldehyde under acidic conditions [14]. However, because of the problem of solubility, it had not been further studied. It was not until 1981, when the Mock team determined its structure using single crystal X-ray diffraction, that the structure of substance was known [11]. It is a ring compound with a hydrophobic cavity having a neutral potential, two carbonyl ports with a negative potential, and an outer surface with a positive potential. Since then, various cucurbit[n]uril have been discovered one after another and are still being explored [1518].

However, because the cucurbit[n]uril itself can dissolve only in solutions of formic acid, concentrated acid, and concentrated alkali, the development of cucurbit[n]uril is greatly limited. Through the efforts of some researchers, some modified cucurbit[n]urils such as methyl-, hydroxyl-, cyclopentyl-, and cyclohexyl-substituted cucurbit[n]urils have been reported [1925]. In the presence of inducers, it is easy to form complexes with various metal ions due to the effect of the outer surface of cucurbit[n]uril [26]. Moreover, cyclohexyl alkyl groups have a stronger ability to bind metal ions due to their electron-pushing effects. Therefore, it leads to an increase in electron cloud density in the ports and an increase in electrostatic repulsion. This increases the cavity of the cucurbit[n]uril and has better performance than ordinary cucurbit[n]uril and the solubility is greatly improved. Therefore, cyclohexyl-substituted cucurbit[n]uril is a kind of cucurbit[n]uril with great generalizing significance. Kim’s research group, which was the first to introduce cyclohexyl into cucurbit[n]uril, reported a series of fully substituted cyclohexyl cucurbits. The experimental results show that fully substituted cyclohexyl cucurbit[5]uril and fully substituted cyclohexyl cucurbit[6]uril have good water solubility [27]. In the Key Laboratory of Macrocyclic and Supramolecular Chemistry of Guizhou Province, a series of Ln–CyH5Q[5] complexes formed by the interaction of fully substituted cyclohexyl cucurbit[5]uril with rare earth metal ions has been reported [28]. A series of Ln–CyH6Q[6] complexes formed by the interaction of fully substituted cyclohexyl cucurbit[6]uril with rare earth metal ions has been reported [29]. There are few studies on the supramolecular complexes constructed by CyH6Q[6] and metal perchlorates.

In this study, CyH6Q[6] (Figure 1) was used as the ligand with Cu(ClO4)2, Zn(ClO4)2, and Mg(ClO4)2 to construct three kinds of supramolecular complexes in formic acid solution. Finally, their structures were determined using single crystal X-ray diffraction.

Figure 1 
               Crystal structure of CyH6Q[6]: (a) top view and (b) side view.
Figure 1

Crystal structure of CyH6Q[6]: (a) top view and (b) side view.

2 Experimental

2.1 General materials

All materials and reagents are analytically pure and purchased on the Aladdin platform, used without any further purification. The cyclohexanocucurbit[6]uril (CyH6Q[6]) was prepared and purified in accordance with a literature method [24]. The synthesis process of CyH6Q[6] is shown in Scheme 1.

Scheme 1 
                  The synthesis process of CyH6Q[6].
Scheme 1

The synthesis process of CyH6Q[6].

2.2 Preparation of complexes

A mixture of CyH6Q[6] (10 mg, 7.58 μmol) and Cu(ClO4)2·6H2O (5 mg, 13.49 μmol) in 3 mL of formic acid was heated until dissolution. The resultant solution was left to stand at room temperature. A week later, colorless prismatic crystals of complex 1 (C60H84Cl2CuN24O26) were obtained in 40% yield (based on CyH6Q[6]). The crystals of complex 2 (C40H56Cl2ZnN16O20) and complex 3 (C40H56Cl2MgN16O20) were obtained following the method described above for complex 1. The yield of complex 2 was about 50% and of complex 3 was about 46% based on CyH6Q[6].

2.2.1 Instrument characterization methods and test conditions

We selected crystals of an appropriate size and fixed them to a glass filament with Vaseline. Crystal data were collected using a Bruker D8 Venture X-ray single-crystal diffraction machine in scan mode using a graphite monochromatic Mo-K ray (λ = 0.71073 Å, μ = 0.828 mm−1) in ω-scan mode. Lorentz polarization and absorption corrections were applied. Structural solutions and full-matrix least-squares refinements based on F 2 were performed using the SHELXT-14 and SHELXL-14 program packages, respectively. All non-hydrogen atoms were refined anisotropically. Analytical expressions for the neutral-atom scattering factors were used and anomalous dispersion corrections were incorporated. Most of the water molecules in the compounds were omitted using the SQUEEZE option in the PLATON program. The main crystal structure parameters are shown in Table 1.

Table 1

Crystallographic parameters of complexes 1–3

Complex 1 2 3
Empirical formula C60H84Cl2CuN24O26 C40H56Cl2ZnN16O20 C40H56Cl2MgN16O20
Formula weight 1691.95 1217.27 1176.21
Crystal system Triclinic Triclinic Triclinic
Space group P P P
a [Å] 12.972(3) 12.755(4) 12.762(2)
b [Å] 15.551(3) 15.431(7) 15.463(3)
c [Å] 19.921(4) 21.533(7) 21.530(4)
α [°] 98.692(6) 91.857(16) 91.961(6)
β [°] 92.474(5) 98.189(9) 98.121(6)
γ [°] 105.477(6) 103.915(14) 103.958(6)
V3] 3813.7(13) 4062(3) 4071.6(12)
Z 2 3 3
D calcd. [g‧cm−3] 1.473 1.493 1.439
T [K] 273.15 273.15 273.15
μ [mm−1] 0.451 0.641 0.220
Parameters 1,031 1,073 1,075
R int 0.1037 0.0572 0.1069
R [I > 2σ(I)]a 0.0999 0.0814 0.1073
wR [I > 2σ(I)]b 0.2698 0.2424 0.3042
R (all data) 0.1493 0.0993 0.1565
wR (all data) 0.2980 0.2581 0.3417
GOF on F 2 1.081 1.041 1.203

aConventional R on Fhkl: ∑||F o| − |F c||/∑|F o|; bWeighted R on |Fhkl|2: ∑[w(F o 2F c 2)2]/∑[w(F o 2)2]1/2.

3 Results and discussion

3.1 Description of the crystal structure of complexes 1–3

Complex 1 exhibited the triclinic P1̄ space group. The asymmetric unit structure contained one CyH6Q[6] molecule, two counter ClO 4 ions, two central Cu2+ ions, and four coordinating water molecules (Figure 2a). One central Cu2+ ion of the complex was coordinated by one carbonyl oxygen atom (O1) and two water molecules (O1W and O2W) from the ligand CyH6Q[6] molecule. The coordination bond length of Cu1–O1 was 2.356 Å. In addition, the coordination bond lengths of Cu1–O1W and Cu1–O2W were 1.975 and 1.978 Å, respectively. Another central Cu2+ ion of the complex was coordinated by one carbonyl oxygen atom (O7) and two water molecules (O3W and O4W) from the ligand CyH6Q[6] molecule. The coordination bond length of Cu2–O7 is 2.288 Å. In addition, the coordination bond lengths of Cu2–O3W and Cu2–O4W were 1.980 and 1.971 Å, respectively. The bond angle around Cu2+ was between 86.74° and 91.97° (Figure 2b). The port of CyH6Q[6] and Cu2+ was bridged by coordination bonds to form a one-dimensional supramolecular chain (Figure 2b). The ion–dipole interaction between counter ClO 4 ions and the positive potential outer surface of the CyH6Q[6] leads to distance of 2.589–2.700 Å (Figure 2c). Complex 1 formed a two-dimensional stacking model in the presence of coordination and ion dipoles as shown in Figure 2d.

Figure 2 
                  Crystal structure of complex 1: (a) asymmetric unit, (b) coordinate bond, (c) ion–dipole interaction, and (d) two-dimensional structure viewed along the a-axis.
Figure 2

Crystal structure of complex 1: (a) asymmetric unit, (b) coordinate bond, (c) ion–dipole interaction, and (d) two-dimensional structure viewed along the a-axis.

Complex 2 exhibited the triclinic P1̄ space group. The asymmetric unit structure contained one CyH6Q[6] molecule, three counter ClO 4 ions, two central Zn2+ ions, five coordinating water molecules, and one coordinating chloride ion (Figure 3a). One central Zn2+ ion of the complex was coordinated by one carbonyl oxygen atom (O1) and two water molecules (O4W and O5W) from the ligand CyH6Q[6] molecule. The coordination bond length of Zn1–O1 was 2.146 Å. In addition, the coordination bond lengths of Zn1–O4W and Zn1–O5W were 2.027 and 2.074 Å, respectively. Another central Zn2+ ion of the complex was coordinated by two carbonyl oxygen atoms (O7 and O8), one chloride ion (Cl14), and three water molecules (O1W, O2W, and O3W) from the ligand CyH6Q[6] molecule. The coordination bond lengths of Zn2–O7 and Zn2–O8 were 2.077 and 2.153 Å, respectively. The coordination bond length of Zn2–Cl14 was 2.187 Å. In addition, the coordination bond lengths of Zn2–O1W, Zn2–O2W, and Zn2–O3W were 2.108, 2.033, and 2.043 Å, respectively. The bond angle around Zn2+ was between 84.20° and 98.66° (Figure 3b). In fact, because of this outer surface interaction of the cucurbit[n]uril, the ion–dipole interaction between counter ClO 4 ions and the positive potential outer surface of the CyH6Q[6] produces distance of 2.388–3.179 Å (Figure 3c). Complex 2 formed a two-dimensional stacking model in the presence of coordination and ion dipoles as shown in Figure 3d. Complex 2 was different from complexes 1 and 3 in that it not only coordinates with carbonyl oxygen and water molecules but also with chloride ions.

Figure 3 
                  Crystal structure of complex 2: (a) asymmetric unit, (b) coordinate bond, (c) ion–dipole interaction, and (d) two-dimensional structure viewed along the b-axis.
Figure 3

Crystal structure of complex 2: (a) asymmetric unit, (b) coordinate bond, (c) ion–dipole interaction, and (d) two-dimensional structure viewed along the b-axis.

Complex 3 exhibited the triclinic P1̄ space group. The asymmetric unit structure contained one CyH6Q[6] molecule, three counter ClO 4 ions, two central Mg2+ ions, and six coordinating water molecules (Figure 4a). One central Mg2+ ion of the complex was coordinated by one carbonyl oxygen atom (O1) and two water molecules (O1W and O2W) from the ligand CyH6Q[6] molecule. The coordination bond length of Mg1–O1 was 2.092 Å. In addition, the coordination bond lengths of Mg1–O1W and Mg1–O2W were 2.033 and 2.068 Å, respectively. Another central Mg2+ ion of the complex was coordinated by two carbonyl oxygen atoms (O7 and O12) and four water molecules (O3W, O4W, O5W, and O6W) from the ligand CyH6Q[6] molecule. The coordination bond lengths of Mg2–O7 and Mg2–O12 were 2.062 and 2.113 Å, respectively. In addition, the coordination bond lengths of Mg2–O3W, Mg2–O4W, Mg2–O5W, and Mg2–O6W were 2.080, 2.070, 2.045, and 2.033 Å, respectively. The bond angle around Mg2+ was between 85.59° and 92.47° (Figure 4b). In fact, because of this outer surface interaction of CyH6Q[6], the ion–dipole interaction between counter ClO 4 ions and the positive potential outer surface of CyH6Q[6] results in distance of 2.419–3.215 Å (Figure 4c). Complex 3 formed a two-dimensional stacking model in the presence of coordination and ion dipoles (Figure 4d). The coordination configurations of complexes 3 and 2 were similar. The difference was that the central Mg2+ of complex 3 did not form coordination bonds with chloride ions, whereas the central Mg2+ of complex 2 formed coordination bonds with chloride ions.

Figure 4 
                  Crystal structure of complex 3: (a) asymmetric unit, (b) coordinate bond, (c) ion–dipole interaction, and (d) two-dimensional structure viewed along the b-axis.
Figure 4

Crystal structure of complex 3: (a) asymmetric unit, (b) coordinate bond, (c) ion–dipole interaction, and (d) two-dimensional structure viewed along the b-axis.

4 Conclusion

Complexes 1–3 were constructed using CyH6Q[6] and Cu(ClO4)2, Zn(ClO4)2, and Mg(ClO4)2, respectively, in formic acid aqueous solution. The experimental results showed that complex 1 formed a two-dimensional stacking model in the presence of coordination and ion–dipole interaction. The coordination configurations of complexes 3 and 2 were similar. The difference was that the central Mg2+ of complex 3 did not form coordination bonds with chloride ions, whereas the central Zn2+ of complex 2 formed coordination bonds with chloride ions. Complex 2 was different from complexes 1 and 3 in that it not only coordinated with carbonyl oxygen and water molecules but also with chloride ions. This study further helped to fill the research gap of CyH6Q[6]. At the same time, it provided a theoretical basis for cucurbit[n]urils in the fields of carrier catalyst, collection, precipitation, adsorption, enrichment, and recovery.


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  1. Funding information: This work was supported by the National Natural Science Foundation of China (Grant No. 21762011), Guizhou Science and Technology Planning Project (Guizhou Science and Technology Cooperation Platform Talent [2017]5788) and the Guizhou Province Graduate Education Innovation Project (No. YJSCXJH [2020] 188).

  2. Author contributions: Jun Zheng: writing – original draft, writing – review and editing, methodology, formal analysis; Lin Zhang: writing – original draft, formal analysis; Xinan Yang: visualization, project administration; Yanmei Jin: resources, writing – review and editing, supervision, data curation; Jie Gao: resources, writing – review and editing, supervision, data curation; Peihua Ma: writing – review and editing.

  3. Conflict of interest: Authors state no conflict of interest.

  4. Data availability statement: The X-ray crystallographic data for structures reported in this study have been deposited in the Cambridge Crystallographic Data Center under accession numbers CCDC: 2055928 (1), 2055951 (2), and 2055947 (3). These data can be obtained free of charge via https://www.ccdc.cam.ac.uk//data_request/cif.

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Received: 2021-07-10
Revised: 2021-10-19
Accepted: 2021-11-02
Published Online: 2021-12-07

© 2021 Jun Zheng et al., published by De Gruyter

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  54. Fe3+ and Ce3+ modified nano-TiO2 for degradation of exhaust gas in tunnels
  55. Analysis of enzyme activity and microbial community structure changes in the anaerobic digestion process of cattle manure at sub-mesophilic temperatures
  56. Synthesis of greener silver nanoparticle-based chitosan nanocomposites and their potential antimicrobial activity against oral pathogens
  57. Baeyer–Villiger co-oxidation of cyclohexanone with Fe–Sn–O catalysts in an O2/benzaldehyde system
  58. Increased flexibility to improve the catalytic performance of carbon-based solid acid catalysts
  59. Study on titanium dioxide nanoparticles as MALDI MS matrix for the determination of lipids in the brain
  60. Green-synthesized silver nanoparticles with aqueous extract of green algae Chaetomorpha ligustica and its anticancer potential
  61. Curcumin-removed turmeric oleoresin nano-emulsion as a novel botanical fungicide to control anthracnose (Colletotrichum gloeosporioides) in litchi
  62. Antibacterial greener silver nanoparticles synthesized using Marsilea quadrifolia extract and their eco-friendly evaluation against Zika virus vector, Aedes aegypti
  63. Optimization for simultaneous removal of NH3-N and COD from coking wastewater via a three-dimensional electrode system with coal-based electrode materials by RSM method
  64. Effect of Cu doping on the optical property of green synthesised l-cystein-capped CdSe quantum dots
  65. Anticandidal potentiality of biosynthesized and decorated nanometals with fucoidan
  66. Biosynthesis of silver nanoparticles using leaves of Mentha pulegium, their characterization, and antifungal properties
  67. A study on the coordination of cyclohexanocucurbit[6]uril with copper, zinc, and magnesium ions
  68. Ultrasound-assisted l-cysteine whole-cell bioconversion by recombinant Escherichia coli with tryptophan synthase
  69. Green synthesis of silver nanoparticles using aqueous extract of Citrus sinensis peels and evaluation of their antibacterial efficacy
  70. Preparation and characterization of sodium alginate/acrylic acid composite hydrogels conjugated to silver nanoparticles as an antibiotic delivery system
  71. Synthesis of tert-amylbenzene for side-chain alkylation of cumene catalyzed by a solid superbase
  72. Punica granatum peel extracts mediated the green synthesis of gold nanoparticles and their detailed in vivo biological activities
  73. Simulation and improvement of the separation process of synthesizing vinyl acetate by acetylene gas-phase method
  74. Review Articles
  75. Carbon dots: Discovery, structure, fluorescent properties, and applications
  76. Potential applications of biogenic selenium nanoparticles in alleviating biotic and abiotic stresses in plants: A comprehensive insight on the mechanistic approach and future perspectives
  77. Review on functionalized magnetic nanoparticles for the pretreatment of organophosphorus pesticides
  78. Extraction and modification of hemicellulose from lignocellulosic biomass: A review
  79. Topical Issue: Recent advances in deep eutectic solvents: Fundamentals and applications (Guest Editors: Santiago Aparicio and Mert Atilhan)
  80. Delignification of unbleached pulp by ternary deep eutectic solvents
  81. Removal of thiophene from model oil by polyethylene glycol via forming deep eutectic solvents
  82. Valorization of birch bark using a low transition temperature mixture composed of choline chloride and lactic acid
  83. Topical Issue: Flow chemistry and microreaction technologies for circular processes (Guest Editor: Gianvito Vilé)
  84. Stille, Heck, and Sonogashira coupling and hydrogenation catalyzed by porous-silica-gel-supported palladium in batch and flow
  85. In-flow enantioselective homogeneous organic synthesis
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