Startseite Crystal structure of tris(azido-κ1N)-(N-(2-aminoethyl)-N-methyl-1,3-propanediamine-κ3N,N′,N′′)cobalt(III), C7H19CoN12
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Crystal structure of tris(azido-κ1N)-(N-(2-aminoethyl)-N-methyl-1,3-propanediamine-κ3N,N′,N′′)cobalt(III), C7H19CoN12

  • Tianyu Li , Xindi Xu , Meifen Huang , Man Wang und Qiong Wu ORCID logo EMAIL logo
Veröffentlicht/Copyright: 10. Dezember 2020

Abstract

C7H19CoN12, monoclinic, P21/c (no. 14), a = 7.7111(2) Å, b = 10.9909(3) Å, c = 17.5650(4) Å, β = 113.7570(10)°, V = 1362.52(6) Å3, Z = 4, Rgt(F) = 0.0266, wRref(F2) = 0.0718, T = 150(2) K.

CCDC No.: 2039151

The molecular structure is shown in the Figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Black block
Size:0.22 × 0.20 × 0.18 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.27 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
θmax, completeness:26.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:22,308, 2793, 0.032
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2500
N(param)refined:182
Programs:Bruker [1], Olex2 [2], SHELX [3], [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.6913 (3)0.49484 (19)0.40998 (12)0.0374 (4)
H1A0.6076610.5369870.4301680.045*
H1B0.7841190.5526500.4076520.045*
C20.7900 (3)0.3924 (2)0.46808 (12)0.0420 (5)
H2A0.8831740.4257260.5193910.050*
H2B0.8564040.3424210.4429220.050*
C30.6518 (3)0.3141 (2)0.48757 (13)0.0404 (5)
H3A0.5730950.3670650.5044790.049*
H3B0.7235410.2628850.5348050.049*
C50.3977 (3)0.1765 (2)0.45522 (13)0.0416 (5)
H5A0.3418880.2413060.4754150.050*
H5B0.4764650.1284930.5029830.050*
C60.2380 (3)0.0955 (2)0.39753 (13)0.0427 (5)
H6A0.2882200.0398090.3685890.051*
H6B0.1877610.0475470.4303680.051*
C70.0808 (3)0.16932 (17)0.33484 (13)0.0359 (4)
H7A−0.0271530.1170700.3058010.043*
H7B0.0412360.2319530.3633560.043*
C80.6419 (3)0.1354 (2)0.40584 (14)0.0462 (5)
H8A0.5622830.0766960.3670030.069*
H8B0.7127870.0963440.4580990.069*
H8C0.7277220.1700150.3845530.069*
Co10.37356 (3)0.32842 (2)0.30814 (2)0.02593 (9)
N10.2817 (2)0.43493 (15)0.37329 (10)0.0322 (3)
N20.1175 (2)0.46119 (13)0.34301 (9)0.0299 (3)
N3−0.0416 (2)0.48680 (16)0.31647 (11)0.0373 (4)
N40.2337 (2)0.42656 (14)0.20873 (10)0.0330 (3)
N50.1770 (2)0.38121 (15)0.14043 (10)0.0351 (4)
N60.1192 (3)0.3438 (2)0.07346 (12)0.0558 (5)
N70.4575 (2)0.21847 (14)0.24158 (10)0.0322 (3)
N80.5645 (2)0.25360 (14)0.21172 (9)0.0328 (3)
N90.6675 (3)0.2825 (2)0.18226 (12)0.0492 (5)
N100.5809 (2)0.44538 (14)0.32626 (9)0.0302 (3)
H10A0.6716990.4057860.3072090.036*
H10B0.5258490.5154260.2888490.036*
N110.1436 (2)0.22663 (14)0.27400 (9)0.0308 (3)
H11A0.0368870.2773380.2369290.037*
H11B0.1592770.1601380.2392790.037*
N120.5229 (2)0.23305 (14)0.41799 (9)0.0315 (3)

Source of material

All chemicals were commercially available and used without further purification. The title compound was synthesized with the following procedure: 0.0081 mL N′,N-bis(3-aminopropyl)methylamine (0.05 mmol) was stirred in 20 mL methanol at room temperature for 5 min. Then, 0.012 g CoCl2⋅6H2O (0.05 mmol) was added to the above solution and the resulting brown mixture was further stirred for another 30 min. Then 0.05 g Ba(N3)2 (0.23 mmol) was added and stirred for 1 h and filtered. The blocked reddish brown crystals of the title compound were obtained after three days by slow evaporation.

Experimental details

The structure was solved with the Olex2 program [2] as an interface together with the SHELXT and SHELXL programs [3], [4]. All H atoms were placed in geometrically idealized positions and refined using a riding model.

Comment

The study on azide ligand have attracted increasing interest in the field of coodination chemistry and crystal engineering, not only because the predictable structures, but also the potential applications, such as magnetism and nonlinear optics [5], [6].

The asymmetric unit of the title structure contains one Co(III) atom, one N′,N-bis(3-aminopropyl)methylamine unit and three azide anions. The central Co(III) atom exhibits a distorted octahedral coordination geometry and is accomplished by three N atoms (N10, N11, N12) from N′,N-bis(3-aminopropyl) methylamine unit and three N atoms from azide anions (see the Figure). The bond lengths and angles are within the normal ranges and are comparable to related structures [7], [8], [9].


Corresponding author: Qiong Wu, Department of Chemical Science and Technology, Kunming University, Kunming, Yunnan 65200, P. R. China, E-mail:

Award Identifier / Grant number: 31760257

Funding source: Yunnan Local Undergraduate Universities

Award Identifier / Grant number: 2017FH001-002

Funding source: Academic and Technical Leaders of Yunnan Province

Award Identifier / Grant number: 2019HB098

  1. Author contribution: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Fund for Less Developed Regions of the National Natural Science Foundation of China (No. 31760257); Joint Basic Research Program (partial) of Yunnan Local Undergraduate Universities (2017FH001-002); The reserve Academic and Technical Leaders of Yunnan Province (2019HB098).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2020-10-21
Accepted: 2020-11-29
Published Online: 2020-12-10
Published in Print: 2021-03-26

© 2020 Tianyu Li et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. The crystal structure of 4-hydroxybenzene-1,3-diaminium dichloride, C6H10Cl2N2O
  4. The crystal structure of 3-chloropropylammonium chloride, C3H9Cl2N
  5. The crystal structure of 1-chloro-2-(dimethylamino)ethane hydrochloride, C4H11Cl2N
  6. Crystal structure of N-(2-(trifluoromethyl)phenyl)hexanamide, C13H16F3NO
  7. Redetermination of the crystal structure of para-toluidine, C7H9
  8. The crystal structure of bis(1,3-dihydroxy-2-methylpropan-2-aminium) carbonate, C9H24N2O7
  9. The crystal structure of 4-chloro-1-methylpiperidin-1-ium chloride, C6H13Cl2N
  10. Crystal structure of (Z)-3-(6-bromo-1H-indol-3-yl)-1,3-diphenylprop-2-en-1-one, C23H16BrNO
  11. The crystal structure of ethyl 2-amino-4-(3,5-difluorophenyl)-7,7-dimethyl-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carboxylate, C20H21F2NO4
  12. Crystal structure of 6,6'‐((1E,1'E)‐(propane‐1,3‐diylbis(azaneylylidene))bis(methaneylylidene))bis(3‐bromophenol), C34H32Br4N4O4
  13. The crystal structure of (E)-2-(2-((2-picolinoylhydrazono)methyl)phenoxy)acetic acid dihydrate, C15H17N3O6
  14. Crystal structure of (E)-4-bromo-N′-(3-chloro-2-hydroxybenzylidene)benzohydrazide, C14H10BrClN2O2
  15. Crystal structure of N,N′-bis(4-bromosalicylidene) ethylene-1,2-diaminopropan, C34H32Br4N4O4
  16. Crystal structure of 4-bromo-N′-[(3-bromo-2-hydroxyphenyl)methylidene]benzohydrazide methanol solvate, C15H14Br2N2O3
  17. The crystal structure of 1,2-bis(1H-benzo[d]imidazol-2-yl)ethane-1,2-diol — N-(2-aminophenyl)-3-(1H-benzo[d]imidazol-2-yl)-2,3-dihydroxypropanamide (1/1), C32H30N8O5
  18. The crystal structure of para-trifluoromethyl-aniline hemihydrate, C14H14F6N2O
  19. Redetermination of the crystal structure of 2-amino-2-methyl-propane-1,3-diole, C4H11NO2
  20. The crystal structure of methacholine chloride, C8H18ClNO2
  21. Crystal structure of 5,7,7-trimethyl-4,6,7,8-tetrahydrocyclopenta[g]isochromen-1(3H)-one, C15H18O2
  22. Crystal structure of poly[diammine-bis(μ4-4-hydroxypyridine-3-sulfonato-κ5N:O, O′:O′′:O′′)(μ2-pyrazinyl-κ2N:N′)tetrasilver(I)], C7H8Ag2N3O4S
  23. Crystal structure of ethyl (E)-5-(((3′,6′-bis(ethylamino)-3-oxospiro[isoindoline-1,9′-xanthen]-2-yl)imino)methyl)-2,4-dimethyl-1H-pyrrole-3-carboxylate — ethanol (1/1), C38H45N5O5
  24. Crystal structure of 4-bromo-N′-[(3-chloro-2-hydroxyphenyl)methylidene]benzohydrazide, C14H7Br2N2O2
  25. Redetermination of the crystal structure of 3,3,3-triphenylpropanoic acid, C21H18O2 – Deposition of hydrogen atomic coordinates
  26. Structure redetermination of dextromethorphan hydrobromide monohydrate, C18H28BrNO2 – localization of hydrogen atoms
  27. Crystal structure of tris(azido-κ1N)-(N-(2-aminoethyl)-N-methyl-1,3-propanediamine-κ3N,N′,N′′)cobalt(III), C7H19CoN12
  28. Crystal structure of tetraaqua-bis(1H-indazole-6-carboxylate-κN)cadmium (II), C16H18CdN4O8
  29. Crystal structure of dichloride-bis(1-propylimidazole-κ1N)zinc(II), C12H20Cl2N4Zn
  30. Crystal structure of (E)-resveratrol 3-O-β-D-xylopyranoside, C19H22O8
  31. Crystal structure of 3,3′-(1,2-phenylene-bis(methylene))bis(1-vinyl- 1H-imidazol-3-ium) bis(hexafluoro phosphate)(V), C18H20F12N4P2
  32. Crystal structure of diaqua[bis(benzimidazol-2-yl-methyl)amine-κ3N,N′,N″]-phthalato-κ1O-nickel(II)-methanol (1/2), C26H31N5NiO8
  33. Crystal structure of 6,7-difluoro-1-methyl-3-(trifluoromethyl)quinoxalin-2(1H)-one, C10H5F5N2O
  34. Crystal structure of dichlorido-bis(1-hexyl-1H-benzotriazole-k1N)zinc(II), C24H34N6Cl2Zn
  35. The crystal structre of 2-(4-bromophenyl)-2,3-dihydro-1H-naphtho[1,8-de][1,3,2]diazaborinine, C16H12BBrN2
  36. Crystal structure of diethyl 3,9-bis(4-fluorophenyl)-6,12-diphenyl-3,9-diazapentacyclo[6.4.0.02,7.04,11]dodecane-1,5-dicarboxylate, C40H36F2N2O4
  37. Crystal structure of (E)-7-methoxy-2-((5-methoxypyridin-3-yl)methylene)-3,4- dihydronaphthalen-1(2H)-one, C18H17NO3
  38. Crystal structure of (E)-2-chloro-6-(((1,3-dihydroxy-2-(oxidomethyl)propan-2-yl)imino)methyl)phenolate-κ3N,O,O’)manganese(IV), C22H24Cl2MnN2O8
  39. The crystal structure of α-(meta-methoxyphenoxy)-ortho-tolylic acid, C15H14O4
  40. The crystal structure of N-(2-chloroethyl)-N,N-diethylammonium chloride, C6H15Cl2N
  41. The crystal structure of tris(2,3,4,6,7,8,9,10-octahydro-1H-pyrimido[1,2-a]azepin-5-ium) trihydrodecavanadate(V), C27H54N6O28V10
  42. Crystal structure of 1,3-bis(octyl)benzimidazolium perchlorate C23H39ClN2O4
  43. Crystal structure of tetrakis[(Z)-(2-(1-(furan-2-yl)-2-methylpropylidene)-1-phenylhydrazin-1-ido-κ2N,N′)] zirconium(IV), C56H60N8O4Zr
  44. The crystal structure of 2-(naphthalen-2-yloxy)-4-phenyl-6-(prop-2-yn-1-yloxy)-1,3,5-triazine, C22H15N3O2
  45. The crystal structure of trimethylsulfonium tris(trifluoromethylsulfonyl)methanide, C7H9F9O6S4
  46. Crystal structure of 4-bromo-N′-[3,5-dichloro-2-hydroxyphenyl)methylidene]benzohydrazide methanol solvate, C15H13BrCl2N2O3
  47. The crystal structure of 4-(4-bromophenyl)-2-(3-(4-bromophenyl)-5-(4-fluorophenyl)-4,5-dihydro-1H-pyrazol-1-yl)thiazole, C24H16Br2FN3S
  48. The crystal structure of N-(adamantan-1-yl)-piperidine-1-carbothioamide, C16H26N2S
  49. The crystal structure of 1-phenyl-N-(4,5,6,7-tetrabromo-1,3-dioxoisoindolin-2-yl)-5-(thiophen-2-yl)-1H-pyrazole-3-carboxamide-dimethylformamide (1/1) C22H10Br4N4O3S
  50. The crystal structure of benzeneseleninic acid anhydride, C12H10O3Se2
  51. The crystal structure of diphenyalmine hydrochloride antimony trichloride co-crystallizate, C12H12Cl4NSb – Localization of hydrogen atoms
  52. The crystal structure of para-nitrobenzylbromide, C7H6BrNO2 – A second polymorph and correction of 3D coordinates
  53. Crystal structure of catena-poly[(5H-pyrrolo[3,2-b:4,5-b′]dipyridine-κ2N,N′)-(μ4-hexaoxidodivanadato)dizinc(II)],C10H9N3O6V2Zn
  54. Crystal structure of N,N′-(2-hydroxypropane-1,3-diyl)bis(pyridine-2-aldimine)-κ5N,N′,N′′,N′′′,O]-tris(nitrato-κ2O,O′) cerium(III), C15H16CeN7O10
  55. Synthesis and crystal structure of oktakis(dimethylsulphoxide-κ1O)gadolinium(III) [tetrabromido-μ2-bromido-μ2-sulfido-di-μ3-sulfido-μ4-sulfido-tetracopper(I)-tungsten(VI)], C16H48O8S12Br5Cu4GdW
  56. Crystal structure of {tris((1H-benzo[d]imidazol-2- yl)methyl)amine-κ4N,N′,N′′,N′′′}-(succinato-κ2O,O′)nickel(II) – methanol (1/4), C32H41N7NiO8
  57. Crystal structure of catena-poly[trans-tetraaqua(μ2-1,1′-(biphenyl-4,4′-diyl)bis(1H-imidazol)-k2N:N′)cobalt(II)] dinitrate – 1,1′-(biphenyl-4,4′-diyl)bis(1H-imidazol) – water (1/3/2), C72H68CoN18O12
  58. Crystal structure of bis(μ2-2-oxido-2-phenylacetate-κ3O:O,O′)-bis(1-isopropoxy-2-oxo-2-phenylethan-1-olato-κ2O,O′)-bis(propan-2-olato-κ1O)dititanium(IV), C44H52O14Ti2
  59. The crystal structure of 5-carboxy-2-(hydroxymethyl)-1H-imidazol-3-ium-4-carboxylate, C6H8N2O6
  60. The crystal structure of 2,6-dibromo-4-fluoroaniline, C6H4Br2FN
  61. The crystal structure of 4-chloro-N-(2-phenoxyphenyl)benzamide, C19H14ClNO2
  62. The crystal structure of 2-methyl-β-naphthothiazole, C12H9NS
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