Home Crystal structure of N,N′–bis(pyridin-4-ylmethyl)pyrazine-2,3-dicarboxamide dihydrate, C18H20N6O4
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Crystal structure of N,N′–bis(pyridin-4-ylmethyl)pyrazine-2,3-dicarboxamide dihydrate, C18H20N6O4

  • Zhaodong Wang EMAIL logo , Huanzhu Lin and Yanshuang Yang
Published/Copyright: March 23, 2017

Abstract

C18H20N6O4, monoclinic, Pc, a = 4.4412(8) Å, b = 14.100(3) Å, c = 15.206(3) Å, β = 95.920(4)°, V = 947.1(3) Å3, Z = 2, Rgt(F) = 0.0352, wRref(F2) = 0.0770, T = 296.15 K.

CCDC no.:: 1534854

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Yellow block
Size:0.28 × 0.22 × 0.16
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.0 cm−1
Diffractometer, scan mode:Bruker, φ and ω
2θmax, completeness:55.6°, >99%
N(hkl)measured, N(hkl)unique, Rint:5693, 2793, 0.022
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2326
N(param)refined:253
Programs:Bruker programs [8], SHELX [9, 10] , OLEX2 [11]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O10.0764(4)0.50400(13)0.69686(11)0.0456(4)
O2−0.1529(4)0.58860(11)0.50554(11)0.0450(5)
N10.4514(5)0.58862(14)0.64393(13)0.0382(5)
H10.55720.59680.60030.046*
N20.6937(7)0.93853(17)0.6340(2)0.0700(8)
N30.4427(6)0.36879(15)0.59609(14)0.0465(6)
N40.1944(5)0.38785(14)0.42142(14)0.0430(5)
N5−0.0888(5)0.55002(13)0.36457(12)0.0337(5)
H50.00440.51420.33040.040*
N60.1070(7)0.90226(17)0.3298(2)0.0646(8)
C10.2571(5)0.51721(15)0.64218(14)0.0308(5)
C20.4845(6)0.65575(17)0.71719(17)0.0432(6)
H2A0.64520.63430.76070.052*
H2B0.29830.65730.74530.052*
C30.5563(6)0.75401(17)0.68745(16)0.0388(6)
C40.4248(7)0.7919(2)0.6094(2)0.0530(7)
H40.28700.75650.57270.064*
C50.4986(9)0.8829(2)0.5858(2)0.0677(9)
H5A0.40590.90690.53280.081*
C60.8168(9)0.9011(2)0.7106(3)0.0740(11)
H60.95000.93840.74700.089*
C70.7571(7)0.8111(2)0.7383(2)0.0555(8)
H70.85230.78850.79160.067*
C80.2830(6)0.44608(16)0.56901(15)0.0316(5)
C90.4760(8)0.30252(18)0.53578(19)0.0535(8)
H90.58290.24760.55270.064*
C100.3573(7)0.31265(18)0.44917(18)0.0531(8)
H100.39210.26540.40880.064*
C110.1544(5)0.45461(15)0.48162(14)0.0305(5)
C12−0.0427(5)0.53776(16)0.45160(14)0.0310(5)
C13−0.2905(6)0.62335(16)0.32515(17)0.0390(6)
H13A−0.46980.62570.35650.047*
H13B−0.35420.60630.26430.047*
C14−0.1485(5)0.72047(17)0.32697(16)0.0375(6)
C15−0.1882(7)0.78357(19)0.39381(19)0.0520(7)
H15−0.30050.76650.43970.062*
C16−0.0596(9)0.8724(2)0.3919(2)0.0642(9)
H16−0.09180.91420.43720.077*
C170.1435(8)0.8410(2)0.2651(2)0.0640(9)
H170.25730.85990.22020.077*
C180.0205(7)0.7505(2)0.2614(2)0.0517(7)
H180.05230.71020.21480.062*
O40.2917(6)0.08204(14)0.41438(19)0.0796(7)
H4A0.31020.03070.39090.119*
H4B0.47550.09210.43990.119*
O30.8244(6)0.09840(15)0.52465(18)0.0794(7)
H3A0.84940.04380.55390.119*
H3B0.96980.09810.49330.119*

Source of material

All reagents and solvents for syntheses were purchased from commercial sources and used as received without further purification. The title compound was prepared by the condensation reaction of dimethyl pyrazine-2,3-dicarboxylate (3.92 g, 20 mmol) with 4-aminomethylpyridine (2.16 g, 20 mmol) under the reflux condition in 15 mL of methanol for 12 h. Followed by rotary evaporation to remove the solvent, a yellow solid was obtained. Recrystallization in CH3OH gave light yellow crystals.

Experimental details

The Uiso values of hydrogen atoms of the water molecules were set to 1.5Ueq(O) and the Uiso values of all other hydrogen atoms were set to 1.2Ueq(C).

Discussion

Pyrazine-based amide ligands have played a very important role in coordination chemistry [1, 2] . Some transition metal complexes of pyrazine-2,3-bisamide ligands were explored to construct supramolecular architectures such as molecular grids. For example, a symmetrical diamide ligand containing a central bridging pyrazinyl unit connected to two tetradentate binding pockets that forms bi- and tetranuclear copper(II) complexes have been reported [3], [4], [5], [6], [7]. The two amide hydrogens of these compounds can be deprotonated, allowing the anionic amidate N donor atoms to coordinate to a metal center. The neutral molecule forms a centrosymmetric dimer. Whereas in the presence of triethylamine, a tetranuclear copper(II) complex is formed, where the pyrazine unit bridges between metal centers [3]. In order to expand the research scope of pyrazine-2,3-bisamide ligand system, we prepared the title compound to investigate its transition metal chemistry.

The title structure consists of one central pyrazine and two pyridin-4-ylmethyl group connected by two amide group and two water molecules. The coordination modes of H2L could be more flexible due to two outside N atom from the pyridine. So, it may be used as a bridging ligand to construct metal complexes with 3D networks or metal organic frameworks.

H2L molecules are connected by hydrogen bonds. The water molecules are connected by hydrogen bonds to form a chain along [100].

Acknowledgement

The author would like to thank the talent introduction project of Chongqing University of Arts and Sciences(No⋅R2012CH12), and Science and technology research project of Chongqing Municipal Education Committee (No⋅KJ131215) for financial support.

References

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Received: 2016-9-27
Accepted: 2017-2-28
Published Online: 2017-3-23
Published in Print: 2017-5-24

©2017 Zhaodong Wang et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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