Home Crystal structure of (5,15-cis-bis(2-hydroxy-1-naphthyl)-10-phenyl-20-(4-hydroxyphenyl)-porphyrinato)-(pyridine)-zinc(ii) pyridine solvate, C67H47N7O3Zn
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Crystal structure of (5,15-cis-bis(2-hydroxy-1-naphthyl)-10-phenyl-20-(4-hydroxyphenyl)-porphyrinato)-(pyridine)-zinc(ii) pyridine solvate, C67H47N7O3Zn

  • Yang Liguo and Wang Xin EMAIL logo
Published/Copyright: April 1, 2017

Abstract

C67H47N7O3Zn, monoclinic, P21/c (no. 14), a = 11.8802(4) Å, b = 20.2309(6) Å, c = 22.3328(6) Å, β = 101.649(3)°, V = 5257.1(3) Å3, Z = 4, Rgt(F) = 0.0609, wRref(F2) = 0.1588, T = 298 K.

CCDC no.:: 1496561

The asymmetric unit of the title crystal structure is shown in the figure. Hydrogen atoms are omitted for clarity. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Red block
Size:0.08 × 0.06 × 0.04 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:5.3 cm−1
Diffractometer, scan mode:Bruker SMART, φ and ω
2θmax, completeness:50°, >99%
N(hkl)measured, N(hkl)unique, Rint:18274, 9239, 0.047
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 5932
N(param)refined:706
Programs:SHELX [7], Bruker programs [8]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Zn10.28970(4)0.20869(2)0.34416(2)0.02434(16)
N10.1432(3)0.25980(15)0.35462(15)0.0235(8)
N20.3819(3)0.26131(15)0.41738(14)0.0225(7)
N30.4223(3)0.13985(15)0.35772(15)0.0269(8)
N40.1837(3)0.13898(15)0.29387(15)0.0239(8)
N50.3264(3)0.26243(17)0.26753(16)0.0294(8)
N60.0791(4)0.3849(2)0.1554(2)0.0618(13)
O21.0135(3)0.21671(17)0.58032(17)0.0552(10)
H21.02910.18480.60320.083*
O30.2654(3)−0.07399(15)0.33739(17)0.0538(10)
H30.2651−0.03670.35170.081*
O40.1661(3)0.29550(14)0.54036(16)0.0426(8)
H40.11800.28520.56040.064*
C10.1372(3)0.31266(19)0.39204(18)0.0248(9)
C20.0229(4)0.3386(2)0.38058(19)0.0297(10)
H2A−0.00240.37500.39970.036*
C3−0.0409(4)0.3010(2)0.33738(19)0.0301(10)
H3A−0.11860.30660.32050.036*
C40.0335(3)0.25002(19)0.32191(18)0.0250(9)
C5−0.0015(3)0.1983(2)0.28026(18)0.0264(10)
C6−0.1268(4)0.1966(2)0.2491(2)0.0303(10)
C7−0.1597(4)0.2136(2)0.1877(2)0.0371(11)
H7−0.10410.22570.16580.045*
C8−0.2742(4)0.2127(2)0.1586(2)0.0466(14)
H8−0.29500.22470.11760.056*
C9−0.3582(5)0.1937(2)0.1905(3)0.0566(17)
H9−0.43510.19280.17100.068*
C10−0.3266(4)0.1765(3)0.2510(3)0.0591(16)
H10−0.38240.16360.27240.071*
C11−0.2113(4)0.1781(2)0.2807(2)0.0450(13)
H11−0.19100.16660.32180.054*
C120.0693(3)0.14677(19)0.26828(18)0.0259(10)
C130.0313(4)0.0912(2)0.22868(19)0.0300(10)
H13−0.04200.08510.20520.036*
C140.1206(4)0.0500(2)0.2319(2)0.0310(10)
H140.12070.00980.21170.037*
C150.2170(3)0.08000(19)0.27296(18)0.0254(9)
C160.3259(4)0.0517(2)0.28916(19)0.0281(10)
C170.3415(3)−0.0145(2)0.2608(2)0.0291(10)
C180.3837(3)−0.0183(2)0.20582(19)0.0269(10)
C190.4279(4)0.0381(2)0.1795(2)0.0338(11)
H190.42810.07910.19840.041*
C200.4693(4)0.0327(2)0.1277(2)0.0415(12)
H200.49850.07000.11200.050*
C210.4694(4)−0.0275(3)0.0972(2)0.0503(14)
H210.4979−0.03040.06150.060*
C220.4267(4)−0.0822(2)0.1208(2)0.0407(12)
H220.4248−0.12220.10010.049*
C230.3855(4)−0.0796(2)0.17555(19)0.0281(10)
C240.3470(4)−0.1368(2)0.2019(2)0.0379(12)
H240.3467−0.17730.18230.045*
C250.3102(4)−0.1331(2)0.2562(2)0.0395(12)
H250.2873−0.17110.27390.047*
C260.3072(4)−0.0716(2)0.2849(2)0.0332(11)
C270.4211(4)0.07902(19)0.3296(2)0.0290(10)
C280.5308(4)0.0479(2)0.3480(2)0.0396(12)
H280.55230.00700.33490.048*
C290.5981(4)0.0894(2)0.3882(2)0.0409(12)
H290.67380.08200.40800.049*
C300.5291(3)0.1469(2)0.3942(2)0.0292(10)
C310.5654(3)0.20023(19)0.43381(18)0.0250(9)
C320.6867(3)0.19960(19)0.47056(19)0.0275(10)
C330.7173(4)0.1629(2)0.5234(2)0.0427(12)
H330.66290.13540.53530.051*
C340.8270(4)0.1659(2)0.5594(2)0.0460(13)
H340.84600.13980.59420.055*
C350.9078(4)0.2076(2)0.5434(2)0.0343(11)
C360.8798(4)0.2436(2)0.4901(2)0.0348(11)
H360.93490.27020.47780.042*
C370.7699(4)0.2402(2)0.4545(2)0.0339(11)
H370.75160.26570.41920.041*
C380.4943(3)0.25169(18)0.44582(18)0.0241(9)
C390.5268(3)0.29985(19)0.49340(19)0.0281(10)
H390.59900.30450.51850.034*
C400.4335(3)0.3369(2)0.49504(19)0.0295(10)
H400.42880.37170.52160.035*
C410.3422(3)0.31235(19)0.44768(19)0.0255(10)
C420.2296(3)0.33701(19)0.43668(18)0.0252(9)
C430.1996(3)0.3860(2)0.48109(19)0.0274(10)
C440.1642(4)0.3630(2)0.53182(19)0.0307(10)
C450.1311(4)0.4060(2)0.5746(2)0.0391(12)
H450.10820.38880.60890.047*
C460.1325(4)0.4725(2)0.5660(2)0.0414(12)
H460.11020.50050.59450.050*
C470.1679(4)0.4997(2)0.5139(2)0.0312(10)
C480.1675(4)0.5682(2)0.5031(2)0.0398(12)
H480.14530.59710.53100.048*
C490.1992(4)0.5928(2)0.4523(2)0.0402(12)
H490.19660.63810.44510.048*
C510.2357(4)0.4837(2)0.4190(2)0.0341(11)
H510.25810.45600.39030.041*
C520.2016(3)0.45571(19)0.47124(19)0.0267(10)
C530.1163(6)0.4340(4)0.2524(3)0.079(2)
H530.10840.43250.29300.095*
C540.0724(4)0.3859(3)0.2157(2)0.0471(13)
H540.03550.35130.23120.056*
C560.1277(5)0.4384(3)0.1319(3)0.0619(16)
H560.12900.44080.09050.074*
C570.1743(6)0.4884(3)0.1712(5)0.097(3)
H570.20670.52430.15490.117*
C580.1759(6)0.4886(3)0.2324(4)0.078(2)
H580.21250.52110.25870.094*
C590.1326(5)0.0551(3)0.4127(2)0.108(3)
H590.07120.03630.38550.130*
C600.1164(6)0.1126(3)0.4439(3)0.152(4)
H600.04430.13240.43760.182*
C610.2081(8)0.1407(2)0.4845(3)0.098(3)
H610.19720.17910.50540.118*
C620.3159(7)0.1112(3)0.4939(2)0.152(5)
H620.37720.12990.52110.183*
C630.3320(5)0.0536(3)0.4627(3)0.132(4)
H630.40420.03390.46900.158*
N70.2404(6)0.0256(2)0.4221(2)0.103(2)
C650.2358(4)0.5501(2)0.4109(2)0.0369(11)
H650.26060.56750.37720.044*
C670.3138(4)0.2350(3)0.2118(2)0.0418(12)
H670.28840.19150.20670.050*
C680.3369(5)0.2686(3)0.1615(2)0.0585(15)
H680.32870.24800.12360.070*
C690.3725(5)0.3339(3)0.1693(3)0.0644(18)
H690.38780.35800.13640.077*
C700.3848(5)0.3624(3)0.2253(3)0.0574(16)
H700.40930.40590.23140.069*
C710.3602(4)0.3254(2)0.2729(2)0.0425(12)
H710.36760.34560.31090.051*

Source of material

Dichloromethane was freshly distilled from CaH2 under a dry nitrogen atmosphere. Dipyrromethane [1], 2-methoxy-1-naphthylboronic acid [2] and n-hexadecyloxyl benzaldehyde [3] were prepared according to the published procedures. All other reagents and solvents were used as received. The complex ZnDNP was prepared according to the published procedures [4]. Suitable crystals of the title compound were obtained by slow diffusion of hexane into a solution of 1 in CHCl3/pyridine (100:1, v/v). The target compound ZnDNP was characterized by mass spectrometry, NMR spectroscopy, and electronic absorption spectroscopies in addition to elemental analysis. Crystal of ZnDNP was grown by liquid diffusion of hexane into a solution of ZnDNP in CHCl3/pyridine (100:1 v/v). 1H-NMR (CDCl3, 400 MHz, 293 K): δ 8.865 (m, 2H), 8.809 (m, 2H), 8.675 (m, 4H), 8.235 (d, 2H, J = 4.4 Hz), 8.205 (d, 2H, J = 4.4 Hz), 8.163 (d, 2H, J = 4.8 Hz), 8.043 (d, 2H, J = 4.8 Hz), 7.995 (M, 2H), 7.685 (m, 3H), 7.616 (d, 2H, J = 4.8 Hz), 7.306 (m, 2H), 7.107 (m, 2H), 6.972 (m, 2H), 6.785 (d, 2H, J = 8.0 Hz); 13C-NMR (CDCl3, 100 MHz, 293 K): δ 154.48, 150.84, 138.07, 135.64, 132.72, 131.20, 131.10, 130.41, 128.39, 127.64, 126.44, 123.03, 122.00, 117.55, 113.41, 110.93; UV-vis (CHCl3): λmax (log ϵ) 423 (5.62), 547 (4.43), 580 (3.80). MALDI-TOF-MS m/z calcd. for C52H34N4O3Zn: (M+) 826.2; Found: 826.5. Anal. Calcd. for C52H34N4O3Zn: C, 75.29; H, 3.50; N, 6.58. Found: C, 75.14; H, 3.45; N, 6.33.

Experimental details

The hydroxy H atoms were located in difference Fourier maps and their positions were refined with O—H bond-length restraints of 0.84(1) Å and with Uiso(H) = 1.2Ueq(O). The remaining H atoms were positioned in geometrically idealized positions and constrained to ride on their parent atoms, with C—H = 0.93 (aryl), and with Uiso(H) = 1.5Ueq(C).

Discussion

In the title structure the Zn center is five-coordinated by four pyrrole nitrogen atoms of porphyrin and one pyridine nitrogen atom, forming slightly distorted rectangular pyramid coordination geometry. The bond distance of Zn—N(pyridine) (2.145(3) Å) is longer than the mean Zn–N(porphyrin) bond distance (2.073(3) Å), both are similar to the corresponding reported values for other pyridine–Zn–porphyrin systems [5]. Due to the axial coordination of pyridine ligand, the Zn center deviates from the N4 mean plane (0.34 Å) and points to the axial pyridine ligand. As expected, the two naphthyl rings are almost perpendicular to the plane defined by the four nitrogen atoms of the porphyrin with a dihedral angle of 89.61° and 79.54°. This indicates a highly restricted rotational freedom of the 2-hydroxynaphthyl group due to the large steric hindrance effects. Notably, another pyridine molecule also binds to the porphyrin host via hydrogen bonding of N(pyridine)–HO(2-hydroxynaphthyl). Furthermore, a one-dimensional (1D) supramolecular double-chain structure can be observed in the crystal of the title compound ZnDNP, the linkages include: 1) hydrogen bondings of O(2-hydroxynaphthyl)⋯HO(4-hydroxyphenyl) and N(pyridine)⋯HO(2-hydroxylnaphthyl), with distances of 1.970(6) and 2.080(5) Å respectively. Here, the hydroxyl of naphthyl are both, hydrogen bonding donor and acceptor. 2) π-π stacking interactions of pyridine-porphyrin and pyridine-pyridine, with inter-ring distances of 3.249 and 3.359 Å, respectively. The above observations imply that the porphyrin ZnDNP can be a receptor with multiple binding sites and multiform intermolecular interactions [6].

Acknowledgement

This work was supported by the Key Scientific Research Projects of Colleges and Universities, Henan Province (Nos. 16A150001, 16A430012).

References

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Received: 2016-9-17
Accepted: 2017-2-17
Published Online: 2017-4-1
Published in Print: 2017-5-24

©2017 Yang Liguo et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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  45. Crystal structure of 3,3-dimethyl-3,4-dihydro-1H-benzo[c]chromene-1,6(2H)-dione, C15H14O3
  46. Crystal structure of bis(2-(2-hydroxymethyl)pyridine-κ2N,O)-bis(pivalato-κO)nickel(II), C22H32N2NiO6
  47. Crystal structure of (1,10-phenanthroline-κ2N,N′)-bis(1H-pyrazole-3-carboxylato-κ2N,O)manganese(II) trihydrate, C20H20N6O7Mn
  48. The crystal structure of 3-aminopropan-1-aminium iodide, C3H11N2I
  49. Crystal structure of ethyl 1-(4-chlorophenyl)-5-methyl-1H-1,2,3-triazole-4 carboxylate, C12H12ClN3O2
  50. Crystal structure of 4,4′-((1Z,1′Z)-2,2′-(2,5-diethoxy-1,4-phenylene)bis(ethene-2,1-diyl))dipyridine, C24H24N2O2
  51. Crystal structure of (16S)-12,16-epoxy-11,14-dihydroxy-17(15/16)-abeo-3a,18-cyclo-8,11,13-abietatrien-7-one, C20H24O4
  52. Crystal structure of aquadichlorido(2,4,6-tri-2-pyridyl-1,3,5-triazine-κ3N,N′,N′′)nickel(II) monohydrate, C18H16Cl2N6NiO2
  53. Crystal structure of catena-poly[dichlorido-(μ-ethane-1,2-diyl-bis-(pyridyl-4-carboxylate-κN:N′)mercury(II)], C15H14Cl2HgN2O4
  54. Crystal structure of methyl 2-acetamido-5-chlorbenzoate, C10H10ClNO3
  55. Crystal structure of tetrakis(μ2-3,3-dimethylacrylato-κ2O,O′)-bis(2-aminopyrimidine-κN) dicopper(II), C28H38Cu2N6O8
  56. Crystal structure of 3-amino-8-methoxy-1-phenyl-1H-benzo[f]chromene-2-carbonitrile, C21H16N2O2
  57. Crystal structure of 4-(2-ammonioethyl)morpholin-4-ium dichloride monohydrate, C6H18Cl2N2O2
  58. Crystal structure of 1-(3-((5-bromo-2-hydroxybenzylidene)amino)phenyl)ethanone O-benzyl oxime, C22H19BrN2O2
  59. Crystal structure of 2-(4-(dimethylamino)-2-fluorophenyl)-1,3-bis(1H-1,2,4-triazol-1-yl)propan-2-ol monohydrate, C15H20FN7O2
  60. Crystal structure of 4-bromo-2-(1H-pyrazol-3-yl)phenol, C9H7BrN2O
  61. Crystal structure of 1,2,3,4,5-pentamethyl-1,3-cyclopentadiene, C10H16
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