Home Crystal structure of 2-(1-benzyl-3-phenyl-1H-pyrazol-5-yl)-5-(4-nitrobenzylthio)-1,3,4-oxadiazole, C25H19N5O3S
Article Open Access

Crystal structure of 2-(1-benzyl-3-phenyl-1H-pyrazol-5-yl)-5-(4-nitrobenzylthio)-1,3,4-oxadiazole, C25H19N5O3S

  • Xu-Wen Huang , Jin-Zong You , Wan-Min Ni , Yi-Ping Zhang , Qi Feng , Wen-Chang Xu , Sheng-Yue Tong , Tang-Qi Li and De-Qiang Qi EMAIL logo
Published/Copyright: March 4, 2017

Abstract

C25H19N5O3S, monoclinic, P21/c (no. 14), a = 16.715(2) Å, b = 11.2677(15) Å, c = 12.6490(17) Å, β = 110.818(2)°, V = 2226.7(5) Å3, Z = 4, Rgt(F) = 0.0424, wRref(F2) = 0.1037, T = 296 K.

CCDC no.:: 1532296

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless block
Size:0.20 × 0.12 × 0.10 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:8.7 cm−1
Diffractometer, scan mode:Bruker SMART, φ and ω
2θmax, completeness:51°, >99%
N(hkl)measured, N(hkl)unique, Rint:12567, 4152, 0.039
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2544
N(param)refined:307
Programs:Bruker programs [9], SHELX [10]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.69047(13)0.81330(19)0.57214(18)0.0507(5)
C20.73757(16)0.7629(2)0.67605(19)0.0640(6)
H20.70940.72840.71980.077*
C30.82537(17)0.7639(2)0.7144(2)0.0776(8)
H30.85600.72940.78380.093*
C40.86874(17)0.8148(3)0.6522(2)0.0805(8)
H40.92830.81560.67930.097*
C50.82338(16)0.8644(3)0.5496(2)0.0774(8)
H50.85220.89880.50660.093*
C60.73495(14)0.8636(2)0.5094(2)0.0642(6)
H60.70490.89720.43940.077*
C70.59664(13)0.81612(18)0.53056(17)0.0479(5)
C80.53994(13)0.87462(18)0.43681(16)0.0474(5)
H80.55370.92030.38440.057*
C90.45989(13)0.85112(18)0.43770(16)0.0441(5)
C100.37760(13)0.88568(18)0.35780(16)0.0445(5)
C110.29425(14)0.96622(19)0.20685(17)0.0503(5)
C120.40620(15)0.73272(19)0.57105(18)0.0561(6)
H12A0.42700.65840.60970.067*
H12B0.35420.71590.50740.067*
C130.38511(16)0.81563(19)0.65103(18)0.0532(6)
C140.30147(18)0.8438(2)0.6342(2)0.0721(7)
H140.25780.81360.57160.087*
C150.2814(2)0.9165(3)0.7093(3)0.0988(11)
H150.22460.93470.69720.119*
C160.3452(3)0.9615(3)0.8011(3)0.1047(12)
H160.33171.01000.85190.126*
C170.4290(3)0.9353(3)0.8188(2)0.0948(10)
H170.47230.96690.88090.114*
C180.44936(18)0.8619(2)0.7441(2)0.0696(7)
H180.50630.84370.75670.084*
C190.15511(15)1.0298(2)0.0300(2)0.0746(8)
H19A0.13431.04730.09080.090*
H19B0.13061.0882−0.02900.090*
C200.12273(14)0.9093(2)−0.01682(18)0.0599(6)
C210.07051(16)0.8456(3)0.0251(2)0.0717(7)
H210.05830.87520.08640.086*
C220.03604(16)0.7391(3)−0.0217(2)0.0731(7)
H220.00070.69670.00710.088*
C230.05456(14)0.6962(2)−0.11166(18)0.0597(6)
C240.10822(15)0.7555(3)−0.1537(2)0.0707(7)
H240.12140.7243−0.21370.085*
C250.14214(15)0.8615(3)−0.10595(19)0.0710(7)
H250.17890.9023−0.13370.085*
N10.55387(12)0.75836(16)0.58665(14)0.0540(5)
N20.47038(11)0.78019(15)0.52856(14)0.0489(4)
N30.30126(11)0.86406(17)0.35354(14)0.0555(5)
N40.24527(11)0.91708(18)0.25261(15)0.0594(5)
N50.01303(14)0.5867(2)−0.1677(2)0.0755(6)
O10.37939(8)0.95170(12)0.26730(11)0.0488(4)
O2−0.03015(15)0.5310(2)−0.12505(17)0.1072(7)
O30.02109(13)0.55763(19)−0.25589(18)0.1030(7)
S10.27062(4)1.04711(6)0.08351(5)0.0685(2)

Source of material

5-(1-Benzyl-3-phenyl-1H-pyrazol-5-yl)-1,3,4-oxadiazole-2-thiol (1.67 g, 5.0 mmol) and 4-nitrobenzyl chloride (0.86 g, 5.0 mmol) were mixed in acetonitrile (25 mL), K2CO3 (0.69 g, 5.0 mmol) was added and the mixture was stirred under reflux for 3 hours. The solution was concentrated by vacuum evaporation and the residue was poured onto crushed ice. The precipitate was collected by filtration, washed with water and cold ethanol to afford the title compound as white solid in 78.7% yield [1]. Crystals were obtained by slow evaporation of a solution in acetonitrile at room temperature.

Experimental details

All H atoms were placed in idealized positions and treated as riding on their parent atoms, with d(C—H) = 0.97 Å (methylene), Uiso(H) = 1.5Ueq(C) and d(C—H) = 0.93 Å (aromatic), Uiso(H) = 1.2Ueq(C).

Discussion

In recent years, 1,3,4-oxadiazoles have received much attention due to their application in fluoroscence dyes [2] and some pharmacological properties, such as enzyme inhibition, anti-convulsant, anti-inflammatory and anti-tumour activities [3], [4], [5], [6]. Pyrazole are as well known for their important biological and pharmaceutical activities [7]. The rational combination of 1,3,4-oxadiazole and pyrazole should provide excellent fluorescence properties and biological activities [8]. In continuation of our development of compounds containing two heterocycles, we report here the crystal structure of a pyrazolyl substituted 1,3,4-oxadiazole.

The core of the title compound consists of one pyrazolyl and one 1,3,4-oxadiazolyl moiety. The pyrazolyl ring (N1/N2/C9/C8/C7) and 1,3,4-oxadiazolyl ring (N3/N4/C11/O1/C10) are almost coplanar with an angle of 4.2° between them. The angle between the planes of the phenyl (C1/C2/C3/C4/C5/C6) and the pyrazolyl plane (N1/N2/C9/C8/C7) is 7.6°. The planes of the benzyl (C13/C14/C15/C16/C17) and the pyrazolyl moiety (N1/N2/C9/C8/C7) are twisted by an angle of 72.4°. Bond lengths and angles are in the expected ranges [1].

Acknowledgement

This work was supported by Project of Science and Technology Department of Zhejiang Province of China (No. 2017C33098).

References

1 Qi, D. Q.; Yu, C. M.; You, J. Z.; Yang, G. H.; Wang, X. J.; Zhang, Y. P.: Synthesis, crystal structures, fluorescence and xanthine oxidase inhibitory activity of pyrazole-based 1,3,4-oxadiazole derivatives. J. Mol. Struct. 1100 (2015) 421–428.10.1016/j.molstruc.2015.07.067Search in Google Scholar

2 Liu, Y.; Zong, L.; Zheng, L.; Wu, L.; Cheng, Y.: Fluorescent chemosensor for metal ions based on optically active polybinaphthyls and 1,3,4-oxadiazole. Polymer 48 (2007) 6799–6807.10.1016/j.polymer.2007.09.018Search in Google Scholar

3 Khan, M. T. H.; Choudhary, M. I.; Khan, K. M.; Rani, M.: Structure-activity relationships of tyrosinase inhibitory combinatorial library of 2,5-disubstituted-1,3,4-oxadiazole analogues. Bioorg. Med. Chem. 13 (2005) 3385–3395.10.1016/j.bmc.2005.03.012Search in Google Scholar PubMed

4 Singh, P.; Jangra, P. K.: Oxadiazoles: a novel class of anti-convulsant agents. Der Chemica Sinica 1 (2010) 118–123.Search in Google Scholar

5 Kadi, A. A.; El-Brollosy, N. R.; Al-Deeb, O. A.; Habib, E. E.; Ibrahim, T. M.; El-Emam, A. A.: Synthesis, antimicrobial, and anti-inflammatory activities of novel 2-(1-adamantyl)-5-substituted-1,3,4-oxadiazoles and 2-(1-adamantylamino)-5-substituted-1,3,4-thiadiazoles. Eur. J. Med. Chem. 42 (2007) 235–242.10.1016/j.ejmech.2006.10.003Search in Google Scholar PubMed

6 Bondock, S.; Adel, S.; Etman, H. A.; Badria, F. A.: Synthesis and antitumor evaluation of some new 1,3,4-oxadiazole-based heterocycles. Eur. J. Med. Chem. 48 (2012) 192–199.10.1016/j.ejmech.2011.12.013Search in Google Scholar PubMed

7 Schmidt, A.; Dreger, A.: Recent advances in the chemistry of pyrazoles. Properties, biological activities, and syntheses. Curr. Org. Chem. 15 (2011) 1423–1463.10.2174/138527211795378263Search in Google Scholar

8 Qi, D. Q.; Yu, C. M.; You, J. Z.; Yang, G. H.; Wang, X. J.; Zhang, Y. P.: Synthesis, crystal structures, fluorescence and xanthine oxidase inhibitory of sulfur-containing pyrazole derivatives incorporated with oxadiazole and triazole. Phosphorus Sulfur Silicon Relat. Elem. 191 (2016) 70–75.10.1080/10426507.2015.1085047Search in Google Scholar

9 Bruker. APEX2, SAINT and SADABS. Brucker AXS Inc., Madison, Wisconsin, USA, (2009).Search in Google Scholar

10 Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

Received: 2016-8-31
Accepted: 2017-2-14
Published Online: 2017-3-4
Published in Print: 2017-5-24

©2017 Xu-Wen Huang et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Articles in the same Issue

  1. Cover and Frontmatter
  2. Crystal structure of 2,5-diiodo-4-nitro-1H-imidazole hemihydrate, C6H4I4N6O5
  3. Crystal structure of catena-poly[μ2-2,2′-(1,3-phenylene)diacetato-κ4O,O′:O′′,O′′′)-(μ2-1,6-bis(2-methyl-1H-benzo[d]imidazol-1-yl)hexane-κ2N:N′)cadmium(II)], C32H34CdN4O4
  4. Crystal structure of poly[aqua-(2,2′-bipyridine-κN,N′)-(μ4-5,5′-(hexane-1,6-diyl)-bis(oxy)diisophthalato κ8O1,O2:O3,O4:O5,O6:O7,O8)manganese(II)], C21H21MnN2O7
  5. Crystal structure of poly-[(μ2-((1,3-bis(benzimidazol-1-yl)propane-κ2N:N′)(μ2-4-tert-butyl-phthalato-κ2O:O′)cobalt(II)] monohydrate, C29H30CoN4O5
  6. Crystal structure of 2-amino-4-(3,4,5-trimethoxy-phenyl)-5-(oxo-5,6,7,8-tetrahydro-4H-chromene)-3-carbonitrile – ethanol (1/1), C21H26N2O6
  7. Crystal structure of ethyl 1-benzyl-5-phenyl-1H-pyrazole-3-carboxylate, C19H18N2O2
  8. Crystal structure of 2-(1-benzyl-3-phenyl-1H-pyrazol-5-yl)-5-(4-nitrobenzylthio)-1,3,4-oxadiazole, C25H19N5O3S
  9. Structure and photochromism of 1,2-bis[2-methyl-5-(2-chlorophenyl)-3-thienyl]-3,3,4,4,5,5-hexafluorocyclopent-1-ene, C27H16Cl2F6S2
  10. The crystal structure of the Schiff base (E)-2,6-diisopropyl-N-(pyridin-4-ylmethylene)aniline, C18H22N2
  11. Crystal structure of (E)-2,4-dibromo-6-(((4-methyl-2-nitrophenyl)imino) methyl)phenol, C10H14Br2N2O3
  12. Crystal structure of (bis(2,2′-bipyridine-κ2N,N′))-(3,5-dinitrosalicylato-κ2O,O′)nickel(II), C27H18N6NiO7
  13. Crystal structure of 1-(diethoxy phosphonomethyl) 2-benzoyl-3-chloro-2-cyclohexen-1-ol, C18H24ClO5P
  14. Crystal structure of tetraaqua-bis(1,3-benzimidazol-3-ium-1,3-diacetato-κO)copper(II) hemihydrate, C22H27CuN4O12.50
  15. Crystal structure of 1α,11-dihydroxyeremophil-9-en-8-one, C15H24O3
  16. Crystal structure of 1-ferrocenylsulfonyl-1H-imidazo[4,5-b]pyridine, C16H13FeN3O2S
  17. Crystal structure of bis(μ2-azido-κ2N:N)-dichlorido-bis(μ2-2-(pyridin-2-yl)ethan-1-ol-κ2O,N)dicopper(II), C14H18Cl2Cu2N8O2
  18. Crystal structure of (5,15-cis-bis(2-hydroxy-1-naphthyl)-10-phenyl-20-(4-hydroxyphenyl)-porphyrinato)-(pyridine)-zinc(ii) pyridine solvate, C67H47N7O3Zn
  19. Crystal structure of (μ2-[2,2′-bis(diphenylphosphino)-1,1′-binaphthalene oxide-κ2O,P])-iodido copper(I), C44H32CuIOP2
  20. Crystal structure of 6,8-diphenyl-2-(4-fluorophenyl)-2,3-dihydroquinolin-4(3H)-one, C27H20FNO
  21. Crystal structure of 5,11,17,23-tetra(tert-butyl)-25,26,27,28-tetrahexoxycalix[4]arene, C68H104O4
  22. Crystal structure of N,N′–bis(pyridin-4-ylmethyl)pyrazine-2,3-dicarboxamide dihydrate, C18H20N6O4
  23. Crystal structure of a diaqua-bis(3,5-di(1H-imidazol-1-yl)pyridine-κN)-bis(2-(4-carboxy-phenyl)acetato-κO]manganese(II), C40H36MnN10O10
  24. Crystal structure of 4-(4-hydroxy-3-methoxy-phenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydro-quinoline-3-carboxylic acid methyl ester, C21H25NO5
  25. Crystal structure of (E)-4,4′-(ethene-1,2-diyl)bis(3-nitrobenzoic acid) 1.5 hydrate, C16H13N2O9.5
  26. Crystal structure of (E)-2-(5-(4-fluorophenyl)-3-(furan-2-yl)-4,5-dihydro-1H-pyrazol-1-yl)-5-((4-fluorophenyl)diazenyl)-4-methylthiazole, C23H17F2N5OS
  27. Crystal structure of the co-crystalline adduct 4-((4,4-dimethyl-2,6-dioxocyclohexylidene)methylamino)-N-(4,6-dimethylpyrimidin-2-yl)benzenesulfonamide - acetic acid (1/1), C21H24N4O4S ⋅ C2H4O2
  28. Synthesis and crystal structure of 2-((5-chlorobenzo[c][1,2,5]thiadiazol-4-yl)amino)-4,5-dihydro-1H-imidazol-3-ium tetraphenylborate, C33H29BClN5S
  29. Crystal structure of (4-chlorophenyl)(3-ferrocenyl-5-(trifluoromethyl)-1H-pyrazol-1-yl)methanone, C21H14ClF3FeN2O
  30. Crystal structure of (S)-benzyl 3-(benzylcarba-moyl)-3,4-dihydroisoquinoline-2(1H)-carboxylate, C25H24N2O3
  31. Crystal structure of 5-acetyl-3-(3-fluoro-4-morpholinophenyl)oxazolidin-2-one, C15H17FN2O4
  32. Crystal structure of 2-(4-fluorophenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C19H16FIN2
  33. Crystal structure of methyl 1H-indole-2-carboxylate, C10H9NO2
  34. Crystal structure of 2,3-diphenyl-1-[(dipropylamino)acetyl]-1,3-diazaspiro[4.5]decan-4-one, C28H37N3O2
  35. Crystal structure of 1-(2H-1,3-benzodioxol-5-yl)-3-(1H-imidazol-1-yl)propan-1-one, C13H12N2O3
  36. Crystal structure of 2,9-dibromo-1,10-phenanthroline, C12H6Br2N2
  37. Crystal structure of 3-(adamantan-1-yl)-4-(4-fluorophenyl)-1H-1,2,4-triazole-5(4H)-thione, C18H20FN3S
  38. Crystal structure of trans-bis((E)-7-oxo-4-(phenyldiazenyl)cyclohepta-1,3,5-trien-1-olato)-κ2O,O′)-bis(pyridine-κN)cobalt(II), C36H28CoN6O4
  39. Crystal structure of 2-(4-methyl-3-phenylthiazol-2(3H)-ylidene)malononitrile, C13H9N3S
  40. Crystal structure of (Z)-3-(adamantan-1-yl)-1-(3-chlorophenyl)-S-benzylisothiourea, C24H27ClN2S
  41. Crystal structure of chlorido{[3-(η5-cyclopenta-dienyl)-2,2,3-trimethyl-1-phenylbutylidene] azanido-κN}[η2(N,O)-N,N-dimethylhydroxylaminato]titanium(IV), C20H27ClN2OTi
  42. Crystal Structure of 1,1′-dimethyl-[4,4′-bipyridine]-1,1′-diium tetrachloridozincate(II), C12H14Cl4N2Zn
  43. Crystal structure of 5-nitro-2-(pyrrolidin-1-yl)benzaldehyde, C11H12N2O3
  44. Crystal structure of 2,3-diphenyl-1-(morpholin-4-ylacetyl)-1,3-diazaspiro[4.5]decan-4-one, C26H31N3O3
  45. Crystal structure of 3,3-dimethyl-3,4-dihydro-1H-benzo[c]chromene-1,6(2H)-dione, C15H14O3
  46. Crystal structure of bis(2-(2-hydroxymethyl)pyridine-κ2N,O)-bis(pivalato-κO)nickel(II), C22H32N2NiO6
  47. Crystal structure of (1,10-phenanthroline-κ2N,N′)-bis(1H-pyrazole-3-carboxylato-κ2N,O)manganese(II) trihydrate, C20H20N6O7Mn
  48. The crystal structure of 3-aminopropan-1-aminium iodide, C3H11N2I
  49. Crystal structure of ethyl 1-(4-chlorophenyl)-5-methyl-1H-1,2,3-triazole-4 carboxylate, C12H12ClN3O2
  50. Crystal structure of 4,4′-((1Z,1′Z)-2,2′-(2,5-diethoxy-1,4-phenylene)bis(ethene-2,1-diyl))dipyridine, C24H24N2O2
  51. Crystal structure of (16S)-12,16-epoxy-11,14-dihydroxy-17(15/16)-abeo-3a,18-cyclo-8,11,13-abietatrien-7-one, C20H24O4
  52. Crystal structure of aquadichlorido(2,4,6-tri-2-pyridyl-1,3,5-triazine-κ3N,N′,N′′)nickel(II) monohydrate, C18H16Cl2N6NiO2
  53. Crystal structure of catena-poly[dichlorido-(μ-ethane-1,2-diyl-bis-(pyridyl-4-carboxylate-κN:N′)mercury(II)], C15H14Cl2HgN2O4
  54. Crystal structure of methyl 2-acetamido-5-chlorbenzoate, C10H10ClNO3
  55. Crystal structure of tetrakis(μ2-3,3-dimethylacrylato-κ2O,O′)-bis(2-aminopyrimidine-κN) dicopper(II), C28H38Cu2N6O8
  56. Crystal structure of 3-amino-8-methoxy-1-phenyl-1H-benzo[f]chromene-2-carbonitrile, C21H16N2O2
  57. Crystal structure of 4-(2-ammonioethyl)morpholin-4-ium dichloride monohydrate, C6H18Cl2N2O2
  58. Crystal structure of 1-(3-((5-bromo-2-hydroxybenzylidene)amino)phenyl)ethanone O-benzyl oxime, C22H19BrN2O2
  59. Crystal structure of 2-(4-(dimethylamino)-2-fluorophenyl)-1,3-bis(1H-1,2,4-triazol-1-yl)propan-2-ol monohydrate, C15H20FN7O2
  60. Crystal structure of 4-bromo-2-(1H-pyrazol-3-yl)phenol, C9H7BrN2O
  61. Crystal structure of 1,2,3,4,5-pentamethyl-1,3-cyclopentadiene, C10H16
Downloaded on 22.11.2025 from https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2016-0262/html
Scroll to top button