Startseite The crystal structure of (Z)-4-bromo-6-(((1,3-dihydroxy-2-(hydroxymethyl)propan-2-yl)amino)methylene)cyclohexa-2,4-dien-1-one monohydrate, C11H16BrNO5
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The crystal structure of (Z)-4-bromo-6-(((1,3-dihydroxy-2-(hydroxymethyl)propan-2-yl)amino)methylene)cyclohexa-2,4-dien-1-one monohydrate, C11H16BrNO5

  • Hai-Bo Qin , Ke-Xiang Liu , Xu Fan , Zhong-Yan Li EMAIL logo und Lin Yuan ORCID logo EMAIL logo
Veröffentlicht/Copyright: 22. März 2022

Abstract

C11H16BrNO5, monoclinic, P21/c (no. 14), a = 15.164(7) Å, b = 11.798(5) Å, c = 7.359(3) Å, β = 90.792°, V = 1316.4(10) Å3, Z = 4, R gt (F) = 0.0322, wR ref (F 2) = 0.0797, T = 296(2) K.

CCDC no.: 2157651

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Yellow block
Size: 0.40 × 0.36 × 0.30 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 3.14 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θ max, completeness: 27.5°, >99%
N(hkl)measured, N(hkl)unique, R int: 14,460, 2974, 0.026
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 2400
N(param)refined: 169
Programs: Bruker [1], SHELX [2, 3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
Br1 0.85816 (2) 0.21106 (3) 0.04114 (4) 0.05558 (12)
C1 1.12451 (14) 0.21342 (18) 0.1810 (3) 0.0316 (4)
O2 1.43527 (12) 0.22951 (14) 0.3232 (3) 0.0513 (5)
H2 1.483797 0.225630 0.275730 0.077*
O4 1.37491 (11) −0.11326 (13) 0.4182 (2) 0.0423 (4)
H4 1.369792 −0.172813 0.361542 0.063*
O3 1.31134 (12) −0.01634 (14) −0.0275 (2) 0.0448 (4)
H3 1.287561 0.031911 −0.091665 0.067*
O1 1.22465 (11) 0.36110 (13) 0.2597 (2) 0.0424 (4)
N1 1.26999 (11) 0.14885 (15) 0.2515 (2) 0.0309 (4)
H1 1.283343 0.218463 0.273074 0.037*
C5 0.97406 (14) 0.2590 (2) 0.1071 (3) 0.0372 (5)
C2 1.14633 (15) 0.33010 (19) 0.2115 (3) 0.0338 (5)
O5 1.38540 (13) −0.18430 (14) 0.7675 (2) 0.0454 (4)
H5A 1.362167 −0.134469 0.835257 0.068*
H5B 1.376889 −0.166396 0.656646 0.068*
C7 1.18961 (14) 0.12808 (18) 0.2029 (3) 0.0337 (5)
H7 1.173491 0.053201 0.181030 0.040*
C8 1.34078 (13) 0.06529 (17) 0.2737 (3) 0.0302 (4)
C6 1.03874 (14) 0.1801 (2) 0.1293 (3) 0.0355 (5)
H6 1.026180 0.103875 0.110268 0.043*
C3 1.07591 (17) 0.4086 (2) 0.1847 (3) 0.0433 (6)
H3A 1.086551 0.485563 0.201557 0.052*
C11 1.30454 (15) −0.03947 (19) 0.3700 (3) 0.0372 (5)
H11A 1.273483 −0.016588 0.478326 0.045*
H11B 1.263163 −0.078578 0.290220 0.045*
C9 1.41180 (15) 0.1213 (2) 0.3926 (3) 0.0413 (5)
H9A 1.390156 0.129727 0.515326 0.050*
H9B 1.463637 0.073173 0.397594 0.050*
C4 0.99268 (16) 0.3734 (2) 0.1347 (3) 0.0437 (6)
H4A 0.948079 0.426755 0.119081 0.052*
C10 1.37661 (15) 0.0359 (2) 0.0861 (3) 0.0385 (5)
H10A 1.397303 0.104618 0.028085 0.046*
H10B 1.426498 −0.014919 0.100265 0.046*

Source of material

5-Bromosalicylaldehyde (1.01 g, 5 mmol), tris(hydroxymethyl)methyl aminomethane (0.67 g, 5.5 mmol) and ethanol (15 mL) were heated and stirred at 373 K for 8 h, then cooled to room temperature; then the product was filtered off and recrystallized from ethanol to afford yellow crystals (1.28 g, yield 89%).

Experimental details

All hydrogen atoms were identified in difference Fourier syntheses. The U iso values of the hydrogen atoms of methyl groups and amino group were set to 1.5U eq (C) and the U iso values of all other hydrogen atoms were set to 1.2U eq (C).

Comment

Schiff bases have a wide range of applications in catalysis, medicine, functional materials and corrosion resistance [4], [5], [6]. In recent years, salicylaldehyde Schiff base compounds have attracted extensive attention due to their unique structure and properties [7], [8], [9], [10], [11].

The structure of the target molecule without a water molecule had been reported [12]. The asymmetric unit of the title structure contains one target molecule and one water molecule. It can be clearly observed that the title molecule exists in a keto form in the structure. The NH group of the enamine moiety participates in an intramolecular N–H···O hydrogen bond (N1···O1 = 2.598 Å) to the oxygen atom of the keto group. The OH group of the TRIS moiety is involved in a OH···O hydrogen bond (O3···O1′ = 2.735 Å; ′ = x, −y+1/2, z1/2). The water molecule donates in total two hydrogen bonds to two title target molecules (O5···O4 = 2.639 Å; O5···O2″ = 2.859 Å; ″ = −x+3, −y, −z+1).


Corresponding authors: Zhong-Yan Li and Lin Yuan, College of Chemistry and Bioengineering, Hunan University of Science and Engineering, Yongzhou, Hunan 425199, P. R. China, E-mail: (Z.-Y. Li), (L. Yuan)

Award Identifier / Grant number: 2021JJ30291

Funding source: Scientific Research Fund of Hunan Provincial Education Department

Award Identifier / Grant number: 21A0518

Award Identifier / Grant number: 21C0691

Funding source: Undergraduate Training Program for Innovation and Entrepreneurship of Hunan Province of China

Award Identifier / Grant number: [2021]197-3585

Funding source: Undergraduate Training Program for Innovation and Entrepreneurship of Hunan University of Science and Engineering

Award Identifier / Grant number: 2021

Funding source: Yongzhou Guiding Science and Technology Plan

Award Identifier / Grant number: 2021

Funding source: Hunan University of Science and Engineering

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was financially supported by Natural Science Foundation of Hunan Province of China (2021JJ30291), the Scientific Research Fund of Hunan Provincial Education Department (21A0518, 21C0691), Undergraduate Training Program for Innovation and Entrepreneurship of Hunan Province of China ([2021]197-3585), Undergraduate Training Program for Innovation and Entrepreneurship of Hunan University of Science and Engineering (2021), Yongzhou Guiding Science and Technology Plan (2021), the construct program of applied characteristic discipline in Hunan University of Science and Engineering.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2022-01-21
Accepted: 2022-03-11
Published Online: 2022-03-22
Published in Print: 2022-06-27

© 2022 Hai-Bo Qin et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. Crystal structure of (E)-(4-imidazol-1-yl-phenyl)-(2-methoxy-benzylidene)-amine monohydrate, C17H17N3O2
  4. Crystal structure of 6-methyl-3-(pyrrolidine-1-carbonyl)-2H-chromen-2-one, C15H15N1O3
  5. Crystal structure of 4-methyl-4-nitropentanoic acid, C6H11NO4
  6. The crystal structure of (E)-3-(furan-2-yl)acrylonitrile, C7H5NO
  7. Crystal structure of 3-(difluoromethyl)-1-methyl-N-(4,11,11-trimethyl-1,2,3,4-tetrahydro-1,4-methanoacridin-9-yl)-1H-pyrazole-4-carboxamide monohydrate, C23H26F2N4O3
  8. Crystal structure of 2-(4-bromobenzyloxy)-6-chloropyridine, C12H9BrClNO
  9. Crystal structure of N-(4-bromo-2,6-dichloro-phenyl)pyrazin-2-amine, C10H6BrCl2N3
  10. Crystal structure of (E)-1-(2–nitrophenyl)-3-phenylprop-2-en-1-one, C15H11NO3
  11. The crystal structure of (E)-3-chloro-2-(2-(4-fluorobenzylidene)hydrazinyl)pyridine, C12H9ClFN3
  12. Crystal structure of (E)-amino(2-(thiazol-2-ylmethylene)hydrazineyl)methaniminium nitrate, C10H16N12O6S2
  13. Crystal structure of 9-methoxy-2,3,4,4a,5,6-hexahydro-1H-pyrido [1′,2′:1,6]pyrazino[2,3-b]quinoxaline, C15H18N4O
  14. The crystal structure bis(dimethylsulfoxide-κ1O)-dipyridine-κ1 N-bis(m2-(Z)-3-methyl-2-oxido-N-((Z)-oxido(phenyl)methylene)benzohydrazonato-κ5)trinickel(II) - dimethylsulfoxide (1/2), C48H56N6Ni3O10S4
  15. Crystal structure of bis(bis(triphenylphosphine)iminium) tetradecacarbonyltetratelluridopentaferrate(2-), (PPN)2[Fe5Te4(CO)14]
  16. Crystal structure of 4-Hydroxy-3-(naphthalen-2-ylthio)pent-3-en-2-one, C15H14O2S
  17. The crystal structure of [(1,10-phenanthroline-κ2 N,N)-bis(6-phenylpyridine-2-carboxylate-κ2 N,O)nickel(II)] monohydrate, C36H26N4O5Ni
  18. Crystal structure of 3,3′-(pyridine-2,6-diylbis(methylene))bis(1-propyl-1H-imidazol-3-ium) ditetrafluoroborate, C19H27B2F8N5
  19. The crystal structure of (E)-1-(4-aminophenyl)-3-(p-tolyl)prop-2-en-1-one, C16H15NO
  20. The crystal structure of poly[(μ2-terephthalato-κ4O,O′: O″,O‴)-(μ4-terephthalato-κ4O:O′:O″:O‴)-{μ4-(1,2,4,5-tetrakis(1,2,4-triazol-1-ylmethyl)-benzene-κ4O:O′:O″,O‴)}dicadmium(II)] – water – acetronitrile (1/2/2), C38H36N14O10Cd2
  21. The crystal structure of diaqua-bis(6-phenylpyridine-2-carboxylato-κ2 N,O)cobalt(II)–water–N,N-dimethylformamide(1/2/1), C27H31N3O9Co
  22. The co-crystal structure of 4-hydroxy-3-methoxybenzoic acid – 4,4′-bipyridine, C8H8O4·C10H8N2
  23. Crystal structure of catena-poly[(μ2-1,1′-(biphenyl-4,4′-diyl)bis(1H-imidazol)-κ2N:N′)-bis(4-bromobenzoate-κ1O)cobalt(II)], C32H22Br2CoN4O4
  24. Crystal structure of (E)-5-propyl-4-((pyridin-2-ylmethylene)amino)-2,4-dihydro-3H-1,2,4-triazole-3-thione – methanol (1/1), C11H13N5S
  25. The crystal structure of (Z)-4-bromo-6-(((1,3-dihydroxy-2-(hydroxymethyl)propan-2-yl)amino)methylene)cyclohexa-2,4-dien-1-one monohydrate, C11H16BrNO5
  26. Crystal structure of bis(tetrapropylammonium) nonaselenidotetrastannate(IV), (Pr4N)2[Sn4Se9]
  27. Crystal structure of 2,6-di-tert-butyl-4-(4-chlorobenzylidene)cyclohexa-2,5-dien-1-one, C21H25ClO
  28. Crystal structure of (2,2′-((naphthalen-1-ylmethyl)azanediyl)diacetato-κ3 N,O,O′)-(1,10-phenanthroline-κ2 N,N′)-copper(II) trihydrate, CuC27H27N3O7
  29. The crystal structure of tetrakis(6-phenylpyridine-2-carboxylato-κ2N,O)-bis(1H-pyrazol-3-ylamine-κ2 N:N)dicobalt(II) dihydrate, C27H23N5O5Co
  30. The crystal structure of bis((E)-2-((tert-butylimino)methyl)-4-chlorophenolato-κ2N,O)zinc(II), C22H26Cl2N2O2Zn
  31. The crystal structure of poly[diaqua-(μ3-5-nitrobenzene-1,2,3-tricarboxylato-κ3O:O′:O′)-(μ2-4,4′-dipyridylamine-κ2N:N′)copper(II)], C38H30Cu3N8O20
  32. The crystal structure of (E)-1-ferrocenyl-3-(naphthalen-1-yl)prop-2-en-1-one, C23H18FeO
  33. The crystal structure of (E)-1-ferrocenyl-3-(4-isopropylphenyl)prop-2-en-1-one, C22H22FeO
  34. Crystal structure of 6-hydroxy-2,2-dimethyl-4Hbenzo[d][1,3]dioxin-4-one, C10H10O4
  35. The crystal structure of (2E,4E)-1-ferrocenyl-5-phenylpenta-2,4-dien-1-one, C21H18FeO
  36. Crystal structure of alaninato-κ2N,O-bis(hydroxylamido-κ2N,O)-oxido-vanadium(V), C3H10N3O5V
  37. Crystal structure of catena-poly[aqua-bis[μ2-6-(1H-imidazol-1-yl)nicotinato-κ2 N,O]copper(II)], C18H14N6O5Cu
  38. Crystal structure of diethyl 4,6-diphenyl-1,9-di-p-tolylhexahydro-3H-2,7,3,5-(epimethanetriyliminomethanetriyl)cyclopenta[b]pyridine-3,5(2H)-dicarboxylate, C42H42N2O4
  39. The crystal structure of cobalt cadmium bis(hydrogenphosphate) bis(phosphate(V)) tetrahydrate, H10O20P4Co3.14Cd1.86
  40. Crystal structure of dimethyl 1,4,6,9-tetraphenylhexahydro-3H-2,7,3,5-(epimethanetriyliminomethanetriyl)cyclopenta[b]pyridine-3,7(2H)-dicarboxylate, C38H34N2O4
  41. Crystal structure of (Z)-4-(furan-2-yl((4-iodophenyl)amino)methylene)-5-methyl-2(p-tolyl)-2,4-dihydro-3H-pyrazol-3-one, C21H16I N3O2
  42. Crystal structure of (E)-1-(4-(3,5-dimethoxystyryl)phenyl)-7-ethylheptanedioate, C25H30O6
  43. Crystal structure of 6-bromo-2-(4-chlorophenyl)chroman-4-one (6-bromo-4′-chloroflavanone), C15H10BrClO2
  44. The crystal structure of 2-(benzhydryloxy)-3-nitropyridine, C18H14N2O3
  45. The crystal structure of 1,3(4,1)-dipyridin-1-iuma-2(1,8)-diethynylanthracena-5(1,3)-benzenacyclohexaphane-11,31-diium bis(hexafluoridophosphate), C36H24F12N2P2
  46. Crystal structure of 3,6-di-tert-butyl-1-iodo-9-methyl-8-(pyren-1-ylethynyl)-9H-carbazole, C39H34IN
  47. The cocrystal 2-(dimethylammonio)-5-nitrobenzoate – 2-(dimethylamino)-5-nitrobenzoic acid, C9H10N2O4
  48. Crystal structure of 5-nitroquinazolin-4(3H)-one, C8H5N3O3
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