Home Crystal structure and photochromic properties of 1-(2-methyl-5-phenyl-3-thienyl)-2-{2-methyl-5-[4-(9-fluorenone hydrazone)-phenyl]-3-thienyl}perfluorocyclopentene, C41H26F6N2S2
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Crystal structure and photochromic properties of 1-(2-methyl-5-phenyl-3-thienyl)-2-{2-methyl-5-[4-(9-fluorenone hydrazone)-phenyl]-3-thienyl}perfluorocyclopentene, C41H26F6N2S2

  • Dongming Xu , Chunhong Zheng EMAIL logo and Shouzhi Pu
Published/Copyright: May 27, 2019

Abstract

C41H26F6N2S2, triclinic, P1̄ (no. 2), a = 11.7525(12) Å, b = 12.2430(12) Å, c = 13.4210(13) Å, α = 84.914(1)°, β = 66.860(1)°, γ = 82.543(1)°, V = 1759.2(3) Å3, Z = 2, Rgt(F) = 0.0459, wRref(F2) = 0.1268, T = 296(2) K.

CCDC no.: 1912666

The crystal structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Source of material

The title compound was synthesized by condensation reaction of a diarylethene derivative and 9-fluorenone hydrazine in 80% yield. Diarylethene derivative 1-(2-methyl-5-phenyl-3-thienyl)-2-[2-methyl-5-(4-formylphenyl)-3-thienyl] perfluorocyclopentene (0.1 g, 0.14 mmol) and 9-fluorenone hydrazine (0.027 g, 0.14 mmol) were dissolved in 20 mL absolute ethanol solution. After the solvent was removed by vacuum evaporation, an orange-yellow solid was obtained with 80% yield. M.p 452 K–453 K. The title compound crystallized from hexane-dichloromethane at room temperature and produced the suitable colorless crystals for X-ray analysis.

Table 1:

Data collection and handling.

Crystal:Colorless block
Size:0.20 × 0.18 × 0.160 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.22 mm−1
Diffractometer, scan mode:Bruker SMART, φ and ω-scans
θmax, completeness:26°, >99%
N(hkl)measured, N(hkl)unique, Rint:13417, 6868, 0.018
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4799
N(param)refined:499
Programs:Bruker programs [1], SHELX [2], [3], [4], OLEX2 [5]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
F10.9484(2)0.29439(16)−0.16731(13)0.1306(8)
F21.02429(13)0.40426(17)−0.10231(15)0.1168(7)
F3a0.7760(5)0.4123(7)−0.1723(4)0.115(2)
F4b0.8799(4)0.5430(6)−0.1723(5)0.104(2)
F5b0.6282(4)0.4263(6)−0.0431(4)0.0973(18)
F6b0.6586(6)0.5610(4)0.0334(3)0.095(2)
F3′b0.8251(9)0.4863(8)−0.1983(4)0.118(3)
F4′a0.8844(4)0.5595(3)−0.0929(8)0.135(3)
F5′a0.6167(3)0.5053(6)−0.0049(4)0.093(2)
F6′a0.7533(6)0.5797(3)0.0279(3)0.0941(16)
N1−0.13525(15)0.31597(16)0.51902(15)0.0617(5)
N2−0.26247(15)0.32805(16)0.58410(15)0.0610(5)
S10.92116(7)0.03001(6)0.14938(6)0.0770(2)
S20.55771(5)0.35659(5)0.39021(4)0.06134(18)
C11.3808(4)−0.0203(6)0.1504(4)0.1439(19)
H1B1.453541−0.0471800.1602550.173*
C21.3692(4)0.0834(5)0.1084(4)0.1464(17)
H2B1.4340770.1273430.0892180.176*
C31.2605(3)0.1242(3)0.0938(3)0.1119(12)
H3A1.2538700.1950760.0638410.134*
C41.1625(3)0.0612(3)0.1230(2)0.0797(8)
C51.1767(3)−0.0451(3)0.1652(3)0.1111(11)
H5A1.112300−0.0895800.1847620.133*
C61.2858(5)−0.0855(4)0.1784(3)0.1398(17)
H6A1.294433−0.1569110.2063330.168*
C71.0478(2)0.1047(2)0.10652(19)0.0663(6)
C81.02234(19)0.2030(2)0.06018(18)0.0606(6)
H8A1.0799450.2542530.0300680.073*
C90.89940(18)0.22050(18)0.06197(16)0.0531(5)
C100.8331(2)0.13182(19)0.10734(18)0.0604(6)
C110.7037(2)0.1155(2)0.1207(2)0.0756(7)
H11A0.6461990.1389010.1908550.113*
H11B0.6987720.0389520.1145040.113*
H11C0.6832040.1583450.0654860.113*
C120.84844(17)0.32167(18)0.02092(15)0.0498(5)
C130.9167(2)0.3678(2)−0.09137(18)0.0647(6)
C140.8304(2)0.4643(2)−0.1088(2)0.0776(8)
C150.7206(2)0.4738(3)−0.00520(19)0.0772(8)
C160.74114(17)0.38448(18)0.07047(16)0.0502(5)
C170.65238(17)0.37506(17)0.18390(15)0.0495(5)
C180.68617(17)0.36555(19)0.27139(16)0.0534(5)
C190.81168(19)0.3652(2)0.27591(19)0.0704(7)
H19A0.8475150.2904610.2787350.106*
H19B0.8031060.4013570.3394440.106*
H19C0.8647710.4034010.2124370.106*
C200.52138(17)0.37666(17)0.21478(16)0.0521(5)
H20A0.4834620.3843040.1650420.062*
C210.45702(17)0.36594(17)0.32385(16)0.0509(5)
C220.32271(17)0.36236(17)0.38465(15)0.0488(5)
C230.25063(19)0.3255(2)0.33636(17)0.0595(6)
H23A0.2882130.3025100.2654480.071*
C240.12437(19)0.32235(19)0.39153(17)0.0577(5)
H24A0.0777190.2976510.3575040.069*
C250.06615(17)0.35592(16)0.49792(16)0.0502(5)
C260.13806(19)0.39093(19)0.54677(17)0.0590(6)
H26A0.1007170.4126560.6181140.071*
C270.26482(19)0.39416(19)0.49116(17)0.0577(5)
H27A0.3116540.4178830.5255300.069*
C28−0.06851(18)0.35538(18)0.55759(18)0.0567(5)
H28A−0.1054800.3850200.6258440.068*
C29−0.31922(18)0.24389(18)0.58810(16)0.0522(5)
C30−0.27560(19)0.13312(18)0.54287(17)0.0549(5)
C31−0.1575(2)0.0834(2)0.48302(19)0.0693(6)
H31A−0.0881280.1222280.4620570.083*
C32−0.1452(3)−0.0249(2)0.4553(2)0.0832(8)
H32A−0.066976−0.0590580.4147070.100*
C33−0.2478(3)−0.0828(2)0.4873(3)0.0892(9)
H33A−0.237589−0.1555930.4680970.107*
C34−0.3656(3)−0.0345(2)0.5475(2)0.0784(7)
H34A−0.434231−0.0742770.5690200.094*
C35−0.3794(2)0.07322(18)0.57472(18)0.0585(5)
C36−0.45522(18)0.24630(18)0.64832(16)0.0526(5)
C37−0.5412(2)0.3291(2)0.7046(2)0.0676(6)
H37A−0.5168000.3967330.7105000.081*
C38−0.6652(2)0.3093(2)0.7525(2)0.0794(8)
H38A−0.7246690.3644410.7908280.095*
C39−0.7013(2)0.2101(2)0.7440(2)0.0800(8)
H39A−0.7850330.1988580.7766920.096*
C40−0.6158(2)0.1259(2)0.6877(2)0.0717(7)
H40A−0.6411140.0585460.6823890.086*
C41−0.49143(19)0.14445(18)0.63951(17)0.0558(5)
  1. Occupancies: a = 0.518(7), b = 0.482(7).

Experimental details

All non-hydrogen atoms were refined anisotropically. The hydrogen atoms were located geometrically, and their positions and thermal parameters were refined using a riding model during the structure refinement. The F atoms attached to C14 and C15 were found to be severely disordered. A suitable disordered model over two positions was constructed and the restrained refinement proceeded in a fairly satisfactory manner. The model refined against this room-temperature data set suggests that disorder of the F atoms is more extensive than the one modelled here and probably involves the whole cyclopentene ring.

Discussion

It is well known that diarylethene derivatives are typical organic photochromic compounds which have attracted significant research interest due to their excellent thermal stability [6], outstanding fatigue resistance [7] and rapid response towards light [8]. They are used in optical storage media and optical switching devices [9], [10]. In addition, introduction of certain functional moieties, diarylethenes can not only respond to light but also to some external stimuli, such as cations, anions, acids and bases [11]. Therefore, the applications of diarylethenes have been further extended to colorimetric and fluorometric sensing [12]. In recent years, Schiff bases have been extensively used in diarylethene chemosensors due to their facile syntheses, tunable electronic properties and good chelating capability [13]. Although many photochromic diarylethene compounds have been reported so far, very few crystal structures of diarylethene derivatives having an ion-recognizing group have been reported.

To date, many diarylethene-derived Schiff base derivatives have been reported [14], [15]. However, few publications report the molecular structural conformation and photochromical behavior in the crystalline phase. It was found that photochromic reactivity in the single crystalline phase depended on both anti-parallel mode and the distance between active carbon atoms, which should be less than 4.2 Å [16], [17]. Here, we report a new diarylethene derivative with 9-fluorenone hydrazone unit and investigated its photochromical properties. A novel diarylethene compound 1-(2-methyl-5-phenyl-3-thienyl)-2-{2-methyl-5-[4-(9-fluorenonehydrazone)-phenyl]-3-thienyl}perfluorocyclopentene (C41H26F6N2S2) was synthesized and its crystal structure was analyzed in detail.

The molecular structure of the title compound is shown in the figure. It is interesting that the molecule is packed in an anti-parallel conformation, and the intramolecular distance between the two reactive carbon atoms (C11⋯C19) is 3.591 Å. The colorless crystal turned purple upon irradiation with 297 nm light, and the colored crystals reverted to a colorless state upon irradiation with visible light (>510 nm). The photochromism was highly reproducible in the crystalline phase even after 100 repeat cycles, indicating that it could potentially find application in certain optoelectronic devices [18], [19], [20], [21]. In the perfluorocyclopentene ring, both thiophene rings are linked by the C12=C16 double bond 1.353(4) Å [22], which is shorter than the formal single bond (such as C9—C12, 1.462(4) Å and C16—C17, 1.463(4) Å). The molecule includes four kinds of planar rings. The dihedral angles between the perfluorocyclopentene ring and the two adjacent thiophene rings are 51.8° for S1/C7—C10 and 49.3° for S2/C17,18–C20,21. The dihedral angle between the thiophene ring (S1) and its adjacent phenyl ring is 4.3°. Finally, the dihedral angle between the thiophene ring (S2) and its attached phenyl ring is 25.8°.

Acknowledgements

This work was supported by the Project of Jiangxi Education Office (GJJ180621). We thank the editor for providing the figure.

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Received: 2019-03-17
Accepted: 2019-04-28
Published Online: 2019-05-27
Published in Print: 2019-09-25

©2019 Dongming Xu et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  41. Crystal structure of diaqua-bis(cinnamato-κ2O,O′)zinc(II), C18H18ZnO6
  42. Crystal structure of 2-(prop-2-yn-1-yloxy)-1-naphthaldehyde, C14H10O2
  43. Crystal structure and photochromic properties of 1-(2-methyl-5-phenyl-3-thienyl)-2-{2-methyl-5-[4-(9-fluorenone hydrazone)-phenyl]-3-thienyl}perfluorocyclopentene, C41H26F6N2S2
  44. Hydrothermal synthesis and crystal structure of cylo[tetraaqua-bis(μ2-1,4-bis(1H-benzo[d]imidazol-1-yl)but-2-ene-κ2N:N′)-bis(μ2-4-nitro-phthalate-κ2O,O′)dinickel(II)], C26H23N5O8Ni
  45. Crystal structure of 3-[methyl(phenyl)amino]-1-phenylthiourea, C14H15N3S
  46. Crystal structure of 1-(4-chlorophenyl)-3-[methyl(phenyl)amino]thiourea, C14H14ClN3S
  47. Crystal structure of 2-tert-butyl-1H-imidazo[4,5-b]pyridine, C10H13N3
  48. Crystal structure of 5-carboxy-2-(2-carboxyphenyl)-1H-imidazol-3-ium-4-carboxylate dihydrate, C12H8N2O6⋅2(H2O)
  49. The crystal structure of dichlorido-μ2-dichlorido-(η2-1,4-bis(4-vinylbenzyl)-1,4-diazabicyclo[2.2.2]octane-1,4-diium)dicopper(I), C24H30N2Cu2Cl4
  50. Crystal structure of 4-bromobenzyl (Z)-N-(adamantan-1-yl)morpholine-4-carbothioimidate, C22H29BrN2OS
  51. Crystal structure of (4S,4aS,6aR,6bR,12aS,12bR,14aS,14bR)-3,3,6a,6b,9,9,12a-heptamethyloctadecahydro-1H,3H-4,14b-ethanophenanthro[1,2-h]isochromene-1(6bH)-one, C30H48O2
  52. Crystal structure of 3,5-bis(trifluoromethyl)benzyl (Z)-N′-(adamantan-1-yl)-4-phenylpiperazine-1-carbothioimidate, C30H33F6N3S
  53. The crystal structure of 3-methoxyphenanthridin-6(5H)-one, C14H11NO2
  54. Crystal structure of 4-(5,5-difluoro-1,3,7,9-tetramethyl-3H,5H-5λ4-dipyrrolo[1,2-c:2′,1′-f][1,3,2]diazaborinin-10-yl)pyridin-1-ium tetraiodidoferrate(III), C18H19BF2FeI4N3
  55. Crystal structure of 2-(3-methoxyphenyl)-3-((phenylsulfonyl)methyl)imidazo[1,2-a]pyridine, C21H18N2O3S
  56. Crystal structure of [(2-(2-chlorophenyl)-5-ethyl-1,3-dioxane-5-carboxylato-κ2O,O′) (5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)]nickel(II) perchlorate, C29H50Cl2N4NiO8
  57. Crystal structure of (Z)-6-(dimethylamino)-3,3-bis(4-(dimethylamino)phenyl)-2-(2-(quinoxalin-2-ylmethylene)hydrazinyl)-2,3-dihydroinden-1-one, C35H35N7O
  58. 5-Methyl-N′-[5-methyl-1-(4-methylphenyl)-1H-1,2,3-triazole-4-carbonyl]-1-(4-methylphenyl)-1H-1,2,3-triazole-4-carbohydrazide, C22H22N8O2
  59. Crystal structure of 2,3-dichloro-6-methoxyquinoxaline, C9H6Cl2N2O
  60. Synthesis and crystal structure of 7-chloro-2-(ethylsulfinyl)-6-fluoro-3-(1H-pyrazole-1-yl)-4H-thiochromen-4-one, C13H10FN3OS2
  61. Crystal structure of 4-ethylpiperazine-1-carbothioic dithioperoxyanhydride, C14H26N4S4
  62. Crystal structure of 2-(2-(6-methylpyridin-2-yl)naphthalen-1-yl)pyrimidine, C20H15N3
  63. The crystal structure of N′-((1E,2E)-4-(7-methoxy-2-oxo-2H-chromen-8-yl)-2-methylbut-2-en-1-ylidene)-3-methylbenzohydrazide, C23H22N2O4
  64. Crystal structure of catena-poly[(μ2-isophthalato-κ2O:O′)-(2,5-di(pyrazin-2-yl)-4,4′-bipyridine-κ3N,N′,N′′)zinc(II)] — water (2/5), C26H21N6O6.5Zn
  65. Crystal structure of (3E,5E)-3,5-bis(3-nitrobenzylidene)-1-((4-(trifluoromethyl)phenyl)sulfonyl)piperidin-4-one — dichloromethane (2/1), C53H38Cl2F6N6O14S2
  66. Crystal structure of (μ2-oxido)-bis(N,N′-o-phenylenebis(salicylideneiminato))diiron(III) — N,N′-dimethylformamide, C47H43Fe2N4O9
  67. Crystal structure of N1,N3-bis(2-hydroxyethyl)-N1, N1,N3,N3-tetramethylpropane-1,3-diaminium dibromide, C11H28Br2N2O2
  68. Crystal structure of (E)-N-(4-chlorophenyl)-1-(pyridin-2-yl)methanimine, C12H9ClN2
  69. Crystal structure of 8-bromo-6-oxo-2-phenyl-6H-pyrrolo[3,2,1-ij]quinoline-5-carbaldehyde, C18H11BrNO2
  70. Crystal structure of 1,4-bis(2-azidoethyl)piperazine-1,4-diium dichloride trihydrate, C8H18N8Cl2 ⋅ 3 H2O
  71. Crystal structure of (E)-4-bromo-N-(pyridin-2-ylmethylene)aniline, C12H9BrN2
  72. Crystal structure of bis[(2-(3-bromophenyl)-5-methyl-1,3-dioxane-5-carboxylato-κ-O)-(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)]nickel(II), C40H60Br2N4NiO8
  73. The crystal structure of (1E,2E)-2-methyl-4-((7-oxo-7H-furo[3,2-g]chromen-9-yl)oxy)but-2-enal O-isonicotinoyl oxime–trichloromethane (3/1), C67H49Cl3N6O18
  74. Crystal structure of 3-(2-ethoxy-2-oxoethyl)-1-methyl-1H-imidazol-3-ium hexafluoridophosphate(V), C8H13F6N2O2P
  75. Crystal structure of bis[(2-(2-bromophenyl)-5-ethyl-1,3-dioxane-5-carboxylato-κO)-(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)]nickel(II) hemihydrate C42H65Br2N4NiO8.5
  76. The crystal structure of N-(7-(4-fluorobenzylidene)-3-(4-fluorophenyl)-3,3a,4,5,6,7-hexahydro-2H-indazole-2-carbonothioyl)benzamide, C28H23F2N3OS
  77. The crystal structure of N1,N4-bis(pyridin-3-yl)cyclohexane-1,4-dicarboxamide, C18H20N4O2
  78. Crystal structure of (E)-2-(3,6-bis(ethylamino)-2,7-dimethyl-9H-xanthen-9-yl)-N′-((6-methylpyridin-2-yl)methylene)benzohydrazide – methanol (1/1), C34H37N5O3
  79. Crystal structure of 2-oxo-1-(pyrimidin-5-ylmethyl)-3-(3-(trifluoromethyl)phenyl)-1,2-dihydro-5l4-pyrido[1,2-a]pyrimidin-4-olate, C20H13F3N4O2
  80. Crystal structure of poly[(μ3-9H-carbazole-3,6-dicarboxylato-κ3O1: O2: O3)(μ2-4-(pyridin-4-yl)pyridine-κ2N1:N1′)zinc(II)], C19H11N2O4Zn
  81. Crystal structure of (E)-N′-((1,8-dihydropyren-1-yl)-methylene)picolinohydrazide, C23H15N3O
  82. Crystal structure of catena-poly{[μ2-1,2-bis(diphenylphosphino)ethane]dichloridocadmium(II)}, C26H24CdCl2P2
  83. Crystal structure of the 1:2 co-crystal between N,N′-bis(4-pyridylmethyl)oxalamide and acetic acid as a dihydrate, C14H14N4O2⋅2 C2H4O2⋅2 H2O
  84. Crystal structure of the co-crystal N,N′-bis(3-pyridylmethyl)oxalamide acetic acid (1/2), C14H14N4O2⋅2C2H4O2
  85. Crystal structure of the co-crystal N,N′-bis(4-pyridylmethyl)oxalamide and 2,3,5,6-tetrafluoro-1,4-di-iodobenzene (1/1), C14H14N4O2⋅C6F4I2
  86. Crystal structure of the co-crystal 4-[(4-carboxyphenyl)disulfanyl]benzoic acid–(1E,4E)-1-N,4-N-bis(pyridin-4-ylmethylidene)cyclohexane-1,4-diamine (1/1), C14H10O4S2⋅C18H20N4
  87. Crystal structure of hexacarbonyl-bis(μ2-di-n-propyldithiocarbamato-κ3S,S′:S3S:S:S′)-di-rhenium(I), C20H28N2O6Re2S4
  88. Crystal structure of fac-tricarbonyl-morpholine-κN-(morpholinocarbamodithioato-κ2S,S′)rhenium(I), C12H17N2O5ReS2
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