Startseite Crystal structure of pyrimidine-2,5-dicarboxylic acid 1.5 hydrate, C12H14N4O11
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Crystal structure of pyrimidine-2,5-dicarboxylic acid 1.5 hydrate, C12H14N4O11

  • Chun-Mei Guo , Xiu-Ying Song , Wan-Ming Xiong , Nian-Qian Kang und Xu-Liang Nie EMAIL logo
Veröffentlicht/Copyright: 8. November 2017

Abstract

C12H14N4O11, orthorhombic, C2221 (no. 20), a = 4.7425(3) Å, b = 12.5852(9) Å, c = 26.5080(18) Å, V = 1582.14(19) Å3, Z = 4, Rgt(F) = 0.0377, wRref(F2) = 0.1064, T = 296(2) K.

CCDC no.:: 1580459

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Block, colorless
Size:0.24 × 0.18 × 0.16 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.15m−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω-scans
2θmax, completeness:25.5°, >99%
N(hkl)measured, N(hkl)unique, Rint:6051, 1470, 0.017
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1449
N(param)refined:138
Programs:Bruker programs [1], SHELX [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O1−0.1375(5)0.00835(18)0.39400(8)0.0306(5)
H1−0.2668−0.02820.38300.046*
O2−0.0203(5)0.02302(19)0.31286(8)0.0372(6)
O30.9818(5)0.38427(16)0.37132(8)0.0295(5)
O40.9023(5)0.3684(2)0.45408(8)0.0343(6)
H4A1.07300.37520.45780.051*
O50.00000.4749(4)0.25000.0594(11)
O60.00000.2479(3)0.25000.0472(9)
O70.0945(12)1.00000.00000.0633(12)
N30.2750(5)0.14249(19)0.42215(9)0.0260(6)
N40.3621(6)0.1743(2)0.33476(9)0.0277(6)
C10.0056(7)0.0451(2)0.35757(11)0.0234(6)
C20.2305(6)0.1259(2)0.37276(11)0.0221(6)
C30.5577(6)0.2457(2)0.34708(11)0.0269(7)
H30.65220.28160.32150.032*
C40.4753(7)0.2138(2)0.43349(11)0.0256(6)
H40.51540.22730.46720.031*
C50.6245(6)0.2681(2)0.39684(11)0.0224(6)
C60.8519(7)0.3464(2)0.41033(10)0.0229(6)
H2W0.080(14)0.210(4)0.271(2)0.11(2)*
H3W0.045(19)1.023(7)0.0279(16)0.14(3)*
H1W0.093(11)0.491(4)0.2757(14)0.083(19)*

Source of material

Pyrimidine-2,5-dicarboxylic acid (PDA) (0.078 g, 0.2 mmol) was dissolved in ethanol (10 mL). To this solution, CoCl2 (0.0238 g, 0.1 mmol) in ethanol (10 mL) was added slowly under stirring at room temperature. The mixture stirred well for 3 h at room temperature and some red powders were obtained. The filtrate was left undisturbed at room temperature, and the colorless block crystal were obtained by slow evaporation of ethanol solution two weeks later. yield 40% (based on PDA). Elemental Anal. Calcd. (%) for C6H4N2O4(168.11): C, 42.87; H, 2.40; N, 16.66. Found (%): C, 42.45; H, 2.63; N, 16.43.

Experimental details

All H atoms were included in calculated positions and refined as riding atoms, with C—H = 0.96–0.97 Å and O—H = 0.81–0.82 Å with Uiso(H) = 1.5 Ueq(C) for methyl H atoms and 1.2 Ueq(C) for all other H atoms.

Discussion

Structures containing metals and N-heterocyclic carboxylic acids have attracted much attention as they can function as a multidentate ligand, exhibit diverse structural type and can be potentially used as functional materials [3], [4], [5], [6]. Recently, we still focused on the construction of MOFs and its activities using imidazole carboxylate and substituted imidazole carboxylate as the bridges [7], [8], [9], [10], [11]. In order to synthesis novel interesting MOFs, we have designed and synthesised a new multifunctional bridging pyrimidine-2,5-dicarboxylic acid based ligand. In the course of our aforementioned study we obtained single crystals of the title compound as a by-product.

The asymmetric unit of the title compound consists of one pyrimidine-2,5-dicarboxylic acid and three 3/2 water molecules. The dicarboxylic acid is located in a general position, whereas the water molecules are all located on 2-fold axes (cf. Table 2). In the molecule of the title compound bond lengths and angles within pyrimidine-2,5-dicarboxylic acid are very similar to those given in the literature for pyrimidine carboxylic acid derivative [12]. In the title structure, the pyrimidine ring is approximately planar. The molecular conformation is characterized by the O3—C6—C5—C3, O3—C6—C5—C3, O1—C1—C2—N4 and O2—C1—C2—N4 torsion angles of 3.3°, 177.4°, 6.7° and 172.9°, respectively. In the crystal, O—H⋯O, O—H⋯N and C—H⋯O hydrogen bonds link the molecules into a three-dimensional network.

Acknowledgements

This work was supported by The National Natural Science Foundation of China (nos. 21563014), The Research Foundation of Educational Department of Jiangxi Province [no. GJJ160382]. X-ray data were collected at Instrumental Analysis Center Nanchang Hangkong University, Nanchang, 330063, People’s Republic of China.

References

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Received: 2017-6-27
Accepted: 2017-10-17
Published Online: 2017-11-8
Published in Print: 2018-1-26

©2018 Chun-Mei Guo et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Artikel in diesem Heft

  1. Cover and Frontmatter
  2. Editorial 2018
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  5. Crystal structure of (E)-1-(4-{[(E)-4-Diethylamino-2-hydroxybenzene methylene]amino}phenyl)ethanone methoxy oxime, C20H27ClN3O3
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  14. Crystal structure of diaqua-bis(N,N-dimethylformamide-κ1O)-bis{3-((5-chloro-2-oxidobenzylidene)amino)-2-oxo-2H-chromen-4-olato-κ4N,O,O′:O′}dinickel(II), C38H34Ni2Cl2N4O12
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  59. The crystal structure of (E)-N-benzyl-N′-benzylidene-4-methylbenzenesulfonohydrazide, C21H20N2O2S
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