Home Crystal structure of bis(2-((allylcarbamothioyl)imino)-4-methylthiazol-3-ido-κ2N,S)palladium(II), C16H20N6PdS4
Article Open Access

Crystal structure of bis(2-((allylcarbamothioyl)imino)-4-methylthiazol-3-ido-κ2N,S)palladium(II), C16H20N6PdS4

  • Suhair M.S. Jambi EMAIL logo
Published/Copyright: December 5, 2017

Abstract

C16H20N6PdS4, monoclinic, C2/c (no. 15), a = 13.2801(8) Å, b = 18.5771(8) Å, c = 10.2577(5) Å, β = 121.906(2)°, V = 2148.29(19) Å3, Z = 4, Rgt(F) = 0.0300, WRref(F2) = 0.0721, T = 293 K.

CCDC no.: 1545564

The crystal structure is shown in the figure. The disorder in the ally moiety is omitted for clarity. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Block, colorless
Size:0.34 × 0.27 × 0.11 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.27 mm−1
Diffractometer, scan mode:Bruker SMART, φ and ω-scans
2θmax, completeness:33.2°, >99%
N(hkl)measured, N(hkl)unique, Rint:49183, 4099, 0.033
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3838
N(param)refined:159
Programs:Bruker programs [1], SHELX [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Pd10.50000.31839(2)0.75000.03215(5)
S10.38995(6)0.19783(3)0.30890(7)0.05980(14)
S20.48422(4)0.40860(2)0.58973(6)0.04436(10)
N10.44970(12)0.24457(7)0.57476(16)0.0367(3)
N20.54461(16)0.30251(9)0.45503(19)0.0464(3)
N30.6317(2)0.41207(11)0.4937(2)0.0566(4)
C10.33325(18)0.16658(12)0.6500(3)0.0508(4)
H1A0.26700.13420.59990.076*
H1B0.31130.20830.68450.076*
H1C0.39870.14290.73650.076*
C20.36847(16)0.18883(9)0.5399(2)0.0413(3)
C30.3282(2)0.15846(11)0.4019(3)0.0537(5)
H3A0.27380.12090.36190.064*
C40.47004(16)0.25548(10)0.4628(2)0.0413(3)
C50.55713(16)0.36801(10)0.5067(2)0.0418(3)
C6a0.6960(14)0.3851(9)0.4193(18)0.0460(18)
H6Aa0.64180.36120.32290.055*
H6Ba0.75820.35160.48610.055*
C7a0.7481(9)0.4521(4)0.3926(13)0.060(2)
H7Aa0.695(8)0.484(5)0.325(10)0.072*
C8a0.8575(9)0.4727(6)0.5772(16)0.098(4)
H8Aa0.86880.44390.65810.118*
H8Ba0.90560.51270.59660.118*
C8Xb0.8542(8)0.4600(4)0.4428(15)0.146(4)
H8XAb0.82960.47720.34520.175*
H8XBb0.93080.46940.52440.175*
C7Xb0.7982(7)0.4313(5)0.4601(10)0.099(2)
H7XAb0.84120.42000.56420.118*
C6Xb0.6822(11)0.3987(7)0.4007(14)0.083(3)
H6XAb0.62820.41700.29810.099*
H6XBb0.68900.34710.39280.099*
H1N30.627(3)0.4521(16)0.515(3)0.061(8)*
  1. Occupancies: a0.345(9), b0.655(9).

Source of material

A mixture of K2[PtCl4] (0.001 mol in distilled water), 1-allyl-3-(4-methylthiazol-2(3H)-ylidene)thiourea (0.002 mol in ethanol), was heated and stirred for 3 h. Then the solution was cooled to room temperature, filtered and washed. The resulting compound crystallized and was dried in a final step.

Experimental details

Hydrogen atoms were placed in their geometrically idealized positions and constrained to ride on their parent atoms.

Discussion

In recent years, thioureas and thiourea derivatives have gained unprecedented fame in medical and non-medical applications. Their characteristics as versatile ligands allow them to form stable complexes [3, 4] . Many reports have documented the ability of thioureas to coordinate transition metals such as Ni(II), Cu(II), Co(II), Fe(III) [5, 6] , Zn(II) [7], Pd(II) [8], and Ru(II) [9]. Their diversified use has received attention by various scientific communities including medical [10], analytical chemistry and metallurgy fields [11]. To name a few, they have been used in antiviral [12, 13] , anti-HIV [14], antimicrobial, antitumor, anti-inflammatory [15], and insecticidal substances [16].

In the title Pd(II) complex two ligands act as bidentate N, S-donor chelates [17]. Pd(II) is four-coordinated (PtN2S2) in a square planar geometry. The Pd1—N1 bond distance is 2.0710(14) Å, the bond angles of N1—Pd1—N1A, N1—Pd1—S2, N1A—Pd1—S2A are 97.06(8), 89.79(4), 89.79(4), respectively. The Pd1—S2 bond distance is 2.2783(4), the bond angles of S2—Pd1—S2A, S2—Pd1—S2A are 85.38(7)°, 85.30(3)°, respectively. Geometric parameters of the organic ligand is within the expectations [18].

References

Bruker: APEX2, SAINT and SADABS. Brucker AXS Inc., Madison, WI, USA (2009).Search in Google Scholar

Sheldrick, G. M.: SHELXT-Integrated space-group and crystal-structure determination. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053273314026370Search in Google Scholar PubMed PubMed Central

Khairul, W.; Daud, A.; Hanifaah, N.; Arshad, S.; Abdul Razak, I.; Zuki, H.; Erben, F.: Structural study of a novel acetylide-thiourea derivative and its evaluation as a detector of benzene. J. Mol. Struct. 1139 (2017) 353–361.10.1016/j.molstruc.2017.03.065Search in Google Scholar

Saeed, A.; Khurshid, A.; Jasinski, J. P.; Pozzi, C. G.; Fantoni, A. C.; Erben, M. F.: Competing intramolecular N—H/O—C hydrogen bonds and extended intermolecular network in 1-(4-chlorobenzoyl)-3-(2-methyl-4-oxopentan-2-yl) thiourea analyzed by experimental and theoretical methods. Chem. Phys. 431 (2014) 39–46.10.1016/j.chemphys.2014.01.009Search in Google Scholar

Gil, D. M.; Lestard, M. D.; Estévez-Hernández, O.; Duque, J.; Reguera, E.: Quantum chemical studies on molecular structure, spectroscopic (IR, Raman, UV–Vis), NBO and Homo–Lumo analysis of 1-benzyl-3-(2-furoyl) thiourea. J. Spectrochim. Acta. A 145 (2015) 553–562.10.1016/j.saa.2015.02.071Search in Google Scholar PubMed

Khairul, W. M.; Daud, A. I.; Hanifaah, N. A. M.; Arshad, S.; Razak, I. A.; Zuki, H. M.; Erben, M. F.: Structural study of a novel acetylide-thiourea derivative and its evaluation as a detector of benzene. J. Mol. Sruct. 1139 (2017) 353–361.10.1016/j.molstruc.2017.03.065Search in Google Scholar

Bilal, S.; Bibi, S.; Ahmad, S. M.: Counterpoise-corrected energies, NBO, HOMO–LUMO and interaction energies of poly(o-aminophenol) for ammonia sensing by DFT methods. Synt. Met. 209 (2015) 143–149.10.1016/j.synthmet.2015.06.027Search in Google Scholar

Daud, A. I.; Khairul, W. M.; Zuki, H. M.; Kubulat, K.: Aerobic synthetic approach and characterisation of some acetylide–thiourea derivatives for the detection of carbon monoxide (CO) gas. J. Mol. Struct. 1093 (2015) 172–178.10.1016/j.molstruc.2015.03.065Search in Google Scholar

Liu, P.; Shu, C.; Liu, L.; Huang, Q.; Peng, Y.: Design and synthesis of thiourea derivatives with sulfur-containing heterocyclic scaffolds as potential tyrosinase inhibitors. Bioorgan. Med. Chem. 24 (2016) 1866–1871.10.1016/j.bmc.2016.03.013Search in Google Scholar PubMed

Qiao, L.; Zhang, Y.; Hu, W.; Guo, J.; Cao, W.; Ding, Z.; Guo, Z.; Fan, A.; Song, J.: Synthesis, structural characterization and quantum chemical calculations on 1-(isomeric methylbenzoyl)-3-(4-trifluoromethylphenyl) thioureas. J. Mol. Struct. 1141 (2017) 309–321.10.1016/j.molstruc.2017.03.113Search in Google Scholar

Saeed, A.; Qamar, R.; Fattah, T. A.; Flörke, U.; Erben, M. F.: Recent developments in chemistry, coordination, structure and biological aspects of 1-(acyl/aroyl)-3-thioureas. Res. Chem. Intermed. 42 (2016) 1–14.10.1007/s11164-016-2811-5Search in Google Scholar

Lal, B.; Badshah, A.; Altaf, A. A.; Khan, N.; Ullah, S.: Miscellaneous applications of ferrocene-based peptides/amides. Appl. Organomet. Chem. 25 (2011) 843–855.10.1002/aoc.1843Search in Google Scholar

Di Grandi, M. J.; Curan, K. J.; Feigelson, G.; Prashad, A.; Ross, A. A.; Visalli, R.; Fairhurst, J.; Feld, B.: Thiourea inhibitors of herpesviruses. Part 3: Inhibitors of varicella zoster virus. J.D. Bloom, Bioorg. Med. Chem. Lett. 14 (2004) 4157–4160.10.1016/j.bmcl.2004.06.025Search in Google Scholar

Venkatachalam, T. K.; Mao, C.; Ucku, F. M.: Effect of stereochemistry on the anti-HIV activity of chiral thiourea compounds. Bioorg. Med. Chem. 12 (2004) 4275–4284.10.1016/j.bmc.2004.04.050Search in Google Scholar PubMed

Kumar, H.; Javed, S. A.; Khan, S. A.; Amir, M.: 1, 3, 4-Oxadiazole/thiadiazole and 1, 2, 4-triazole derivatives of biphenyl-4-yloxy acetic acid: synthesis and preliminary evaluation of biological properties. Eur. J. Med. Chem. 43 (2008) 2688–2698.10.1016/j.ejmech.2008.01.039Search in Google Scholar PubMed

Wang, B.; Ma, Y.; Xiong, L.; Li, Z.: Synthesis and insecticidal activity of novelN-pyridylpyrazole carbonyl thioureas. Chin. J. Chem. 30 (2012) 815–821.10.1002/cjoc.201100386Search in Google Scholar

Schoultz, X.; Gerber, T.; Hosten, E.: Rhenium(I) complexes with benzothiazole-thiourea derivatives. Polyhedron 113 (2016) 55–60.10.1016/j.poly.2016.04.016Search in Google Scholar

Jambi, S. M. S.; Al-Obaid, A. M.; Hosten, E. C.; Betz, R.; Bari, A.: Crystal structure of 1-(4-methylthiazol-2-yl)-3-propylthiourea, C8H13N3S2. Z. Kristallogr. NCS 231 (2016) 901–902.10.1515/ncrs-2016-0001Search in Google Scholar

Received: 2017-8-15
Accepted: 2017-11-10
Published Online: 2017-12-5
Published in Print: 2018-1-26

©2018 Suhair M.S. Jambi, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Articles in the same Issue

  1. Cover and Frontmatter
  2. Editorial 2018
  3. Crystal structure of dimethanol-bis{3-(((2-oxidonaphthalen-1-yl)methylene)amino)-2-oxo-2H-chromen-4-olato-κ3O,N:O′}dizinc(II), C42H30Zn2N2O10
  4. Crystal structure of aqua-bis{[2,6-dimethyl-N-(pyridin-2-ylmethylene)aniline-κ2N,N′]}zinc(II) triflate monohydrate [ZnC29H31N4O]CF3SO3⋅H2O
  5. Crystal structure of (E)-1-(4-{[(E)-4-Diethylamino-2-hydroxybenzene methylene]amino}phenyl)ethanone methoxy oxime, C20H27ClN3O3
  6. Crystal structure of (E)-1-(4-(((E)-4-(diethylamino)-2-hydroxybenzylidene)amino)phenyl)ethan-1-one oxime, C19H23N3O2
  7. Crystal structure of poly[(μ2-1,4-bis((2-ethyl-1H-benzo[d]imidazol-1-yl)methyl)benzene-κ2N:N′)-(μ2-4,4′-sulfonyldibenzoato-κ2O:O′)zinc(II)], C40H34N4O6SZn
  8. Crystal structure of catena-poly[diaqua(μ3-pyrazine-2,3-dicarboxylato-κ4O,N:O′:O′′)zinc(II)] 1.25 hydrate, C6H8.5N2O7.25Zn
  9. Crystal structure of fac-(acetylacetonato-κ2O,O′)tricarbonyl(tri-m-tolyl phosphane-κP)rhenium(I), C29H28O5PRe
  10. Crystal structure of bis(μ2-methanolato-κ2O:O)-bis(methanol-κ1O)-bis{3-((4-methoxy-2-oxidobenzylidene)amino)-2-oxo-2H-chromen-4-olato-κ3O,O′,N}dichromium(III), C38H36Cr2N2O14
  11. Crystal structure of poly[aqua-(μ3-pyridine-3,5-dicarboxylato-κ5O,O′:O′′,O′′′,N)zinc(II)], C7H7NO6Zn
  12. Crystal structure of bis((1-(((4-(((benzyloxy)imino)methyl)phenyl)imino)methyl)naphthalen-2-yl)oxy-κ2O,N)copper(II), C52H42CuN4O4
  13. Crystal structure of bis{5-(diethylamino)-2-(((2-oxo-2H-chromen-6-yl)imino)methyl)phenolato-κ2O,N}cobalt(II), C40H38CoN4O6
  14. Crystal structure of diaqua-bis(N,N-dimethylformamide-κ1O)-bis{3-((5-chloro-2-oxidobenzylidene)amino)-2-oxo-2H-chromen-4-olato-κ4N,O,O′:O′}dinickel(II), C38H34Ni2Cl2N4O12
  15. Crystal structure of tetrakis(methanol-κO)bis{3-((4-methoxy-2-oxidobenzylidene)amino)-2-oxo-2H-chromen-4-olato-κ3O,N,O′}bicobalt(II), C38H38Co2N2O14
  16. Crystal structure of (S)-tert-butyl-(1-hydroxypropan-2-yl)carbamate, C8H17NO3
  17. Crystal structure of 4-(4′-(pyridin-4-yl)-[1,1′-biphenyl]-4-yl)pyridin-1-ium catena-poly[{5-carboxy-4′-methyl-[1,1′-biphenyl]-3-carboxylato-κ2O,O′}-(μ2-4′-methyl-[1,1′-biphenyl]-3,5-dicarboxylato-κ4O,O′:O′′,O′′′)lead(II)], C52H40N2O9Pb
  18. Crystal structure of catena-poly[diaqua-(μ2-5-methylisophthalato-κ2O:O′)(μ2-1,4-bis((1H-1,2,4-triazol-1-yl)methyl)benzene-κ2N:N′)], NiC21H22O6N6
  19. Crystal structure of the salt tris(guanidinium) tris(tetrapropylammonium) bis(pyridine-2,4,6-tricarboxylate) – water (1/10), C55H126N14O22
  20. Crystal structure of 5-hydroxy-2-(4-hydroxy-3-methoxyphenyl)-3,7,8-trimethoxy-4H-chromen-4-one, C19H18O8
  21. Crystal structure of poly{[μ2-1,1′-(sulfonylbis(4,1-phenylene))bis(2-methyl-1H-imidazole)-κ2N:N′][μ2-4,4′-oxydibenzoato-κ2O:O′]cobalt(II)} hemihydrate, C34H27N4O7.5SCo
  22. The crystal structure of 25,27-(2,2′-[(2-thioxo-1,3-dithiole-4,5-diyl)disulfanediyl]diethanolate)-26,28-dihydroxycalix[4]arene — dichloromethane (1/1), C36H32Cl2O4S5
  23. The crystal structure of 1,2-bis(3-(pyridin-3-yl)-1,2,4-oxadiazol-5-yl)ethane, C16H12N6O2
  24. Crystal structure of 1-benzyl-3-((4-bromophenyl)amino)-4-(4-methoxyphenyl)-1H-pyrrole-2,5-dione, C24H19BrN2O3
  25. Crystal structure of bis(2-((allylcarbamothioyl)imino)-4-methylthiazol-3-ido-κ2N,S)palladium(II), C16H20N6PdS4
  26. Crystal structure of pyrimidine-2,5-dicarboxylic acid 1.5 hydrate, C12H14N4O11
  27. Crystal structure of trans-diaqua-bis(1H-pyrazole-3-carboxylato-κ2N,O)manganese(II), C8H10N4O6Mn
  28. Crystal structure of catena-(μ3-5-bromoisophthatato-κO,O′: O′′,O′′′′)-(1,2-bis(imidazol-1-yl)ethane-κN:N′)cobalt(II), C16H13CoN4O4Br
  29. Investigation of the compound La5Zn2−xPb1 + x (x = 0.20–0.32)
  30. Crystal structure of (OC-6-13)-diaqua-bis(3,5-di(pyridin-3-yl)-4H-1,2,4-triazol-4-amine-κ1N)-bis(dicyanamido-κ1N)zinc(II) tetrahydrate, ZnC28H32N18O6
  31. Crystal structure of Ga0.62(3)Sb0.38(3)Pd3
  32. Crystal structure of Ga0.47(1)Sb0.53(1)Pd2
  33. A derivative of the Corey lactone – crystal structure of (3aR,4S,5R,6aS)-4-(((tert-butyldimethylsilyl)oxy)methyl)-2-oxohexahydro-2H-cyclopenta[b]furan-5-yl benzoate, C21H30O5Si
  34. A Corey lactone: crystal structure of (3aR,4R,5R,6aS)-5-benzoyloxy-4(hydroxymethyl)hexahydro-2H-cyclopenta[b]furan-2-one, C15H16O5
  35. Hydrothermal synthesis and crystal structure of poly[aqua-(μ2-1,3-bis(4-pyridyl)propane-κ2N:N′)-(μ2-1,4,5,6,7,7-hexachlorobicyclo[2.2.1]hept-5-ene-2,3-dicarboxylato-κ2O:O′)manganese(II) hydrate, C22H20Cl6N2O6Mn
  36. Crystal structure of 2-acetylpyrrole S-methylthiosemicarbazonium hydroiodide, C8H13IN4S
  37. Crystal structure of [N,N-bis((pyrrol-2-yl)ethylidene)butane-1,4-diamine-κ4N,N′,N′′,N′′′]-nickel(II), C16H20N4Ni
  38. Crystal structure of poly[aqua-(μ5-2,5-dicarboxybenzoato-κ5O:O:O′:O′′:O′′′)sodium(I)], C9H7NaO7
  39. Crystal structure of bis(N′-((1H-pyrrol-2-yl)methylene)-1-methylthio-methanethiohydrazido-κ2S,N)nickel(II), C14H16N6NiS4
  40. Crystal structure of 1-(4-((benzo[d][1,3]dioxol-5-yloxy)methyl)phenethyl)-4-(3-chlorophenyl) piperazin-1-ium chloride, C26H28Cl2N2O3
  41. Crystal structure of 2-(4-(2-(4-(2-fluorophenyl)piperazin-1-yl)ethyl)benzyl)benzo[d]isothiazol-3(2H)-one 1,1-dioxide, C26H26FN3O3S – a saccharin dervative
  42. Crystal structure of 3-(2-dimethylaminoethyl)-2,3-dihydro-2-thioxoquinazolin-4(1H)-one, C12H15N3OS
  43. Crystal structure of 3-(3-dimethylaminopropyl)-2,3-dihydro-2-thioxoquinazolin-4(1H)-one, C13H17N3OS
  44. The crystal structure of trans-tetraaqua-bis(p-tolylsulfinato-κO)calcium(II)), C14H22O8S2Ca
  45. The crystal structure of (E)-N′-(pyridin-2-ylmethylene)pyrazine-2-carbohydrazide, C11H9N5O
  46. Crystal structure of (E)-3-(pyren-1-yl)-1-(pyridin-4-yl)prop-2-en-1-one, C24H15NO
  47. Crystal structure of catena-poly[diaqua-(μ2-tartrato-κ4O,O′:O′′,O′′′)cobalt(II)], C4H8CoO8
  48. Crystal structure of 4-chloro-2-methyl-6-(4-(trifluoromethoxy)phenyl)pyrimidine, C12H8ClF3N2O
  49. Crystal structure of 1-(4-fluorophenyl)-N-(5-((triphenylstannyl)thio)thiophen-2-yl)methanimine, C27H20FN3S2Sn
  50. Crystal structure of methyl (Z)-2-(5-fluoro-2-oxoindolin-3-ylidene)hydrazine-1-carbodithioate, C10H8FN3OS2
  51. Crystal structure of tert-butyl (Z)-4-(2-(5-methoxy-3-(2-((methylthio)carbonothioyl)hydrazono)-2-oxoindolin-1-yl)ethyl)piperazine-1-carboxylate, C22H31N5O4S2
  52. The crystal structure of (E)-2-((2-(o-tolylcarbamothioyl)hydrazono)methyl)benzoic acid, C16H15N3O2S
  53. Crystal structure of 2-chloro-1,3-di-tert-pentyl-4,4-diphenyl-1,3,2λ3,4-diazaphosphasiletidine, C22H32ClN2PSi
  54. Crystal structure of tetramethyl 5,5′-(buta-1,3-diyne-1,4-diyl)diisophthalate, C24H18O8
  55. Crystal structural of 2-amino-4-(4-methoxyphenyl)-3-cyano-7,7-dimethyl-5-oxo-4H-5,6,7,8-tetrahydrobenzo[b]pyran, C19H20N2O3
  56. Crystal structure of 1,3,5-tris((trimethylsilyl)methyl)-1,3,5-triazinane-2,4,6-trione, C15H33N3O3Si3
  57. The crystal structure of bis(2-benzoyl-5-hydroxylphenolato-κ2O,O′)copper(II), C26H18CuO6
  58. Crystal structure of 2,6-bis(3-(pyrazin-2-yl)-1H-1,2,4-triazol-5-yl)pyridine – 1-ethyl-3-methyl-1H-imidazol-3-ium bromide (1/1), C23H22N13Br
  59. The crystal structure of (E)-N-benzyl-N′-benzylidene-4-methylbenzenesulfonohydrazide, C21H20N2O2S
  60. Crystal structure of ethyl (E)-5-((2-(3-hydroxybenzoyl)hydrazono)methyl)-3,4-dimethyl-1H-pyrrole-2-carboxylate – water – ethanol (1/1/1), C19H27N3O6
  61. The crystal structure of (E)-4-(3-ethoxy-2-hydroxybenzylideneamino)benzoic acid, C16H15NO4
  62. Crystal structure of (μ2-N,N′-bis((pyridin-4-yl)methyl)ethanediamide-κ2N:N′)-tetrakis(diethylcarbamodithioato-κ2S,S′)dizinc(II), C34H54N8O2S8Zn2
Downloaded on 17.11.2025 from https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2017-0157/html
Scroll to top button