Home Crystal structure of a diaqua-bis(3,5-di(1H-imidazol-1-yl)pyridine-κN)-bis(2-(4-carboxy-phenyl)acetato-κO]manganese(II), C40H36MnN10O10
Article Open Access

Crystal structure of a diaqua-bis(3,5-di(1H-imidazol-1-yl)pyridine-κN)-bis(2-(4-carboxy-phenyl)acetato-κO]manganese(II), C40H36MnN10O10

  • Feng-Yang Ju EMAIL logo , Wen-Bo Guo and Yun-Ping Li
Published/Copyright: March 28, 2017

Abstract

C40H36MnN10O10, monoclinic, P21/c (no. 14), a = 21.8966(12) Å, b = 7.2586(4) Å, c = 12.2346(6) Å, β = 98.232(1)°, V = 1924.52(18) Å3, Z = 2, Rgt(F) = 0.0327, wRref(F2) = 0.0847, T = 296(2) K.

CCDC no.:: 1536054

The centrosymmetric title complex is shown in the figure (carbon-bound hydrogen atoms are omitted for clarity). Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless block
Size:0.29 × 0.24 × 0.18 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:4.2 cm−1
Diffractometer, scan mode:Bruker SMART, φ and ω
2θmax, completeness:50.6°, >98%
N(hkl)measured, N(hkl)unique, Rint:12096, 3454, 0.031
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2889
N(param)refined:278
Programs:Bruker programs [15], SHELX [16]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Mn10.00000.50000.50000.02413(12)
N10.10173(7)0.5602(2)0.54943(12)0.0319(4)
N20.20066(6)0.6003(2)0.53829(11)0.0280(3)
N30.30400(7)0.7017(3)0.33524(13)0.0488(5)
N40.42434(7)0.6389(2)0.57356(13)0.0366(4)
N50.52259(7)0.6965(3)0.62951(16)0.0508(5)
O10.01706(6)0.24810(18)0.41929(11)0.0396(3)
O20.04835(6)−0.01109(16)0.35286(10)0.0350(3)
O30.36372(6)0.2007(3)0.37731(14)0.0619(5)
H30.40020.22630.37770.093*
O40.39615(7)0.1281(3)0.55267(15)0.0712(5)
C10.05021(8)0.1080(2)0.42762(14)0.0270(4)
C20.09645(8)0.0780(3)0.53182(14)0.0314(4)
H2A0.08750.16460.58790.038*
H2B0.0909−0.04520.55950.038*
C30.16288(8)0.1012(2)0.51473(14)0.0301(4)
C40.18071(8)0.1529(3)0.41465(15)0.0365(5)
H40.15060.17610.35460.044*
C50.24214(8)0.1708(3)0.40235(16)0.0387(5)
H50.25270.20570.33440.046*
C60.28818(8)0.1374(3)0.49029(16)0.0359(4)
C70.27104(9)0.0893(3)0.59121(17)0.0445(5)
H70.30120.06860.65160.053*
C80.20966(9)0.0719(3)0.60290(16)0.0407(5)
H80.19920.03980.67140.049*
C90.35440(9)0.1544(3)0.47794(19)0.0449(5)
C100.13436(8)0.5643(3)0.65362(16)0.0383(5)
H100.11720.55280.71850.046*
C110.19484(9)0.5875(3)0.64852(15)0.0398(5)
H110.22650.59370.70780.048*
C120.14248(8)0.5820(3)0.48284(15)0.0337(4)
H120.13300.58470.40630.040*
C130.25593(8)0.6292(2)0.49305(14)0.0278(4)
C140.25408(9)0.6734(3)0.38299(16)0.0405(5)
H140.21570.68390.33980.049*
C150.35881(9)0.6860(3)0.39792(16)0.0424(5)
H150.39430.70160.36530.051*
C160.36478(8)0.6473(3)0.50957(15)0.0322(4)
C170.31282(8)0.6185(3)0.55824(15)0.0330(4)
H170.31590.59250.63320.040*
C180.44063(10)0.5459(3)0.67148(18)0.0498(6)
H180.41520.47220.70780.060*
C190.50058(10)0.5826(4)0.70416(19)0.0533(6)
H190.52380.53730.76810.064*
C200.47577(9)0.7272(3)0.55210(18)0.0467(5)
H200.47770.80030.49030.056*
O5W0.00980(7)0.63117(19)0.34312(11)0.0459(4)
H2W−0.00750.58850.28170.069*
H1W0.02060.74260.33610.069*

Source of material

A mixture of 3,5-bis(1-imidazoly)pyridine (bip, 0.05 mmol, 45 mg), 4-carboxybenzeneacetic acid (H2cbaa, 0.05 mmol, 9.0 mg), Mn(OAc)2×4H2O (0.1 mmol, 24 mg), ethanol (3.5 mL) and H2O (3.5 mL) was sealed in a 25 mL Teflon-lined autoclave, and then was heated to 120 °C for 4 days. After the mixture was cooled slowly to room temperature, colorless crystals of the title compound were obtained.

Experimental details

Carbon-bound H atoms were placed in calculated positions and were included in the refinement in the riding model approximation, with Uiso(H) set to 1.2Ueq(C). The H atoms of the hydroxyl groups were allowed to rotate with a fixed angle around the C—O bond to best fit the experimental electron density, with Uiso(H) set to 1.5Ueq(O).

Discussion

Metal-organic coordination polymers (MOCPs), which are fabricated by metal moieties and organic ligands, have attracted a great deal of attention because of their potential applications in the areas of electronics, magnetism, optics, gas absorption and catalysis, combining with their aesthetically pleasing structures [1], [2], [3], [4], [5]. Effective synthetic strategies of MOCPs with expected structures and properties should take many factors into account, such as the properties of the metal ions, organic ligands, solvent, temperature, pH value and the crystallization procedure [6, 7] . And for this purpose, numerous multi-functional carboxylate ligands have been designed, synthesized and investigated deeply, owing to their inherent outstanding coordination capabilities and changeable coordination modes [8], [9], [10]. Moreover, N-donor ligands have been proved to be efficient and typical building blocks in the assembly of MOCPs [11, 12] . As part of a systematic study, the semirigid dicarboxylate, H2cbaa has been selected as primary ligand as they are rarely used [13, 14] . The N-donor ligand 3,5-bis(1-imidazoly)pyridine (bip) is introduced as secondary ligand to modify the structure of resulting compound.

The asymmetric unit comprises of one half Mn(II) cation, one Hcbaa anion, one bip molecule and one coordinated H2O molecule. The Mn displays a [MnN2O4] octahedrally coordinated geometry with the coordination sphere defined by two -CH2COO oxygen atoms from two symmetry-related Hcbaa anions, two oxygen atoms from two coordinated water molecules and two imidazolyl N atoms from two symmetry related bip ligands. The bond lengths of Mn(1)—O(1) and Mn(1)—O(5W) are 2.1362(13) Å and 2.1804(13) Å, while the bond length of Mn(1)—N(1) is 2.2657(14) Å.

H-bonding interactions exist among the Hcbaa anions, coordinated water molecules and bip ligands. The detailed data are listed as follows: O(3)—H(3)⋯N(5)#1 = 2.612(2) Å, O(5W)—H(2W)⋯O(2)#2 = 2.7500(18) Å, O(5W)—H(1W)⋯O(2)#3 = 2.7277(18) Å. (symmetry codes: #1 − x + 1, − y + 1, − z + 1; #2 − x, y + 1/2, −z + 1/2; #3 x, y + 1, z). A notable feature of title compound is that each mononuclear building block interacts with its four neighbors via four O(5W)–H(2W)⋯O(2) hydrogen bonds to form one monolayer motif parallel to the bc plane. Moreover, the layers are further pillared by O(3)—H(3)⋯N(5) hydrogen bonds to the 3D framework. H-bonding interactions play a vital role in the self-assembly and enhanced stability of the title structure.

Acknowledgement

This work was supproted by the Foundation of Science and Technology of Henan Province (grant no. 112102310638).

References

1 Zeng, M. H.; Wang, Q. X.; Tan, Y. X.; Hu, S.; Zhao, H.-X.; Long, L.-S.; Kurmoo, M.: Rigid pillars and double walls in a porous metal-organic framework: single-crystal to single-crystal, controlled uptake and release of iodine and electrical conductivity. J. Am. Chem. Soc. 132 (2010) 2561–2563.10.1021/ja908293nSearch in Google Scholar PubMed

2 Furukawa, H.; Yaghi, O. M.: Storage of hydrogen, methane, and carbon dioxide in highly porous covalent organic frameworks for clean energy applications. J. Am. Chem. Soc. 131 (2009) 8875–8883.10.1021/ja9015765Search in Google Scholar PubMed

3 Aijaz, A.; Sañudo, E. C.; Bharadwaj, P. K.: Construction of coordination polymers with a bifurcating ligand: synthesis, structure, photoluminescence, and magnetic studies. Cryst. Growth Des. 11 (2011) 1122–1134.10.1021/cg101351bSearch in Google Scholar

4 De la Pinta, N.; Serna, Z.; Madariaga, G.; Urtiaga, M. K.; Fidalgo, M. L.; Cortés, R.: Ferromagnetic interactions in an unusual 2D coordination polymer including di-2-pyridylketone-methoxilated anion, (1,1)-azide, and rare (1,1,3,3)-azide bridging ligands. Cryst. Growth Des. 11 (2011) 1458–1461.10.1021/cg200267xSearch in Google Scholar

5 Karmakar, A.; Titi, H. M.; Goldberg, I.: Coordination polymers of 5-(2-amino/acetamido-4-carboxyphenoxy)-benzene-1,3-dioic acids with transition metal ions: synthesis, structure, and catalytic activity. Cryst. Growth Des. 11 (2011) 2621–2636.10.1021/cg200350jSearch in Google Scholar

6 Long, L. S.: pH effect on the assembly of metal-organic architectures. CrystEngComm 12 (2010) 1354–1365.10.1039/b921146bSearch in Google Scholar

7 Ma, L. F.; Liu, B.; Wang, L. Y.; Li, C.-H.; Du, M.: Copper(II) 5-methoxyisophthalate coordination polymers incorporating dipyridyl co-ligands: syntheses, crystal structures, and magnetic properties. Dalton Trans. 39 (2010) 2301–2308.10.1039/b920308gSearch in Google Scholar PubMed

8 Xin, L. Y.; Liu, G. Z.; Li, X. L.; Wang, L. Y.: Structural diversity for a series of metal(II) complexes based on flexible 1,2-phenylenediacetate and dipyridyl-type coligand. Cryst. Growth Des. 12 (2012) 147–157.10.1021/cg200903kSearch in Google Scholar

9 Li, G.-L.; Liu, G.-Z.; Ma, L.-F.; Xin, L.-Y.; Li, X.-L.; Wang, L.-Y.: Crystallographic determination of solid-state structural transformations in a dynamic metal-organic framework. Chem. Commun. 50 (2014) 2615–2617.10.1039/C3CC49106DSearch in Google Scholar PubMed

10 Ju, F.-Y.; Li, Y.-P.; Li, G.-L.; Liu, G.-Z.: syntheses, crystal structures, and magnetic properties of cobalt(II) complexes with 1,1-cyclohexanediacetic acid. Chinese J. Struct. Chem. 35 (2016) 404–412.Search in Google Scholar

11 Zhang, L.-P.; Ma, J.-F.; Yang, J.; Pang, Y.-Y.; Ma, J.-C.: Series of 2D and 3D coordination polymers based on 1,2,3,4-benzenetetracarboxylate and N-donor ligands: synthesis, topological structures, and photoluminescent properties. Inorg. Chem. 49 (2010) 1535–1550.10.1021/ic9019553Search in Google Scholar PubMed

12 Yin, W.-D.; Li, G.-L.; Liu, G.-Z.; Liu, G.-Z.; Xin, L.-Y.; Li, X.-L.; Ma, L.-F.: syntheses, structures and properties of two coordination polymers constructed by 3-nitrobenzene-1,2-dicarboxylate acid and Zn/Co. Chinese J. Inorg. Chem. 31 (2015) 1439–1446.Search in Google Scholar

13 Liu, G.-Z.; Li, S.-H.; Wang, L.-Y.: Five M(II) coordination polymers assembled from various polynuclear units spaced by semirigid carboxyphenylpropionate and N-donor coligand. CrystEngComm 14 (2012) 880–889.10.1039/C1CE05926BSearch in Google Scholar

14 Li, X.-L.; Liu, G.-Z.; Xin, L.-Y.; Li, G.-L.: Synthesis, crystal structure, and properties of two 2D lamella coordination polymers generated from unsymmetrically carboxylate bridging ligand. Synth. React. Inorg. M. 45 (2015) 914–920.10.1080/15533174.2013.769595Search in Google Scholar

15 Bruker. APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, WI, USA (2009).Search in Google Scholar

16 Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

Received: 2016-9-29
Accepted: 2017-3-5
Published Online: 2017-3-28
Published in Print: 2017-5-24

©2017 Feng-Yang Ju et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Articles in the same Issue

  1. Cover and Frontmatter
  2. Crystal structure of 2,5-diiodo-4-nitro-1H-imidazole hemihydrate, C6H4I4N6O5
  3. Crystal structure of catena-poly[μ2-2,2′-(1,3-phenylene)diacetato-κ4O,O′:O′′,O′′′)-(μ2-1,6-bis(2-methyl-1H-benzo[d]imidazol-1-yl)hexane-κ2N:N′)cadmium(II)], C32H34CdN4O4
  4. Crystal structure of poly[aqua-(2,2′-bipyridine-κN,N′)-(μ4-5,5′-(hexane-1,6-diyl)-bis(oxy)diisophthalato κ8O1,O2:O3,O4:O5,O6:O7,O8)manganese(II)], C21H21MnN2O7
  5. Crystal structure of poly-[(μ2-((1,3-bis(benzimidazol-1-yl)propane-κ2N:N′)(μ2-4-tert-butyl-phthalato-κ2O:O′)cobalt(II)] monohydrate, C29H30CoN4O5
  6. Crystal structure of 2-amino-4-(3,4,5-trimethoxy-phenyl)-5-(oxo-5,6,7,8-tetrahydro-4H-chromene)-3-carbonitrile – ethanol (1/1), C21H26N2O6
  7. Crystal structure of ethyl 1-benzyl-5-phenyl-1H-pyrazole-3-carboxylate, C19H18N2O2
  8. Crystal structure of 2-(1-benzyl-3-phenyl-1H-pyrazol-5-yl)-5-(4-nitrobenzylthio)-1,3,4-oxadiazole, C25H19N5O3S
  9. Structure and photochromism of 1,2-bis[2-methyl-5-(2-chlorophenyl)-3-thienyl]-3,3,4,4,5,5-hexafluorocyclopent-1-ene, C27H16Cl2F6S2
  10. The crystal structure of the Schiff base (E)-2,6-diisopropyl-N-(pyridin-4-ylmethylene)aniline, C18H22N2
  11. Crystal structure of (E)-2,4-dibromo-6-(((4-methyl-2-nitrophenyl)imino) methyl)phenol, C10H14Br2N2O3
  12. Crystal structure of (bis(2,2′-bipyridine-κ2N,N′))-(3,5-dinitrosalicylato-κ2O,O′)nickel(II), C27H18N6NiO7
  13. Crystal structure of 1-(diethoxy phosphonomethyl) 2-benzoyl-3-chloro-2-cyclohexen-1-ol, C18H24ClO5P
  14. Crystal structure of tetraaqua-bis(1,3-benzimidazol-3-ium-1,3-diacetato-κO)copper(II) hemihydrate, C22H27CuN4O12.50
  15. Crystal structure of 1α,11-dihydroxyeremophil-9-en-8-one, C15H24O3
  16. Crystal structure of 1-ferrocenylsulfonyl-1H-imidazo[4,5-b]pyridine, C16H13FeN3O2S
  17. Crystal structure of bis(μ2-azido-κ2N:N)-dichlorido-bis(μ2-2-(pyridin-2-yl)ethan-1-ol-κ2O,N)dicopper(II), C14H18Cl2Cu2N8O2
  18. Crystal structure of (5,15-cis-bis(2-hydroxy-1-naphthyl)-10-phenyl-20-(4-hydroxyphenyl)-porphyrinato)-(pyridine)-zinc(ii) pyridine solvate, C67H47N7O3Zn
  19. Crystal structure of (μ2-[2,2′-bis(diphenylphosphino)-1,1′-binaphthalene oxide-κ2O,P])-iodido copper(I), C44H32CuIOP2
  20. Crystal structure of 6,8-diphenyl-2-(4-fluorophenyl)-2,3-dihydroquinolin-4(3H)-one, C27H20FNO
  21. Crystal structure of 5,11,17,23-tetra(tert-butyl)-25,26,27,28-tetrahexoxycalix[4]arene, C68H104O4
  22. Crystal structure of N,N′–bis(pyridin-4-ylmethyl)pyrazine-2,3-dicarboxamide dihydrate, C18H20N6O4
  23. Crystal structure of a diaqua-bis(3,5-di(1H-imidazol-1-yl)pyridine-κN)-bis(2-(4-carboxy-phenyl)acetato-κO]manganese(II), C40H36MnN10O10
  24. Crystal structure of 4-(4-hydroxy-3-methoxy-phenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydro-quinoline-3-carboxylic acid methyl ester, C21H25NO5
  25. Crystal structure of (E)-4,4′-(ethene-1,2-diyl)bis(3-nitrobenzoic acid) 1.5 hydrate, C16H13N2O9.5
  26. Crystal structure of (E)-2-(5-(4-fluorophenyl)-3-(furan-2-yl)-4,5-dihydro-1H-pyrazol-1-yl)-5-((4-fluorophenyl)diazenyl)-4-methylthiazole, C23H17F2N5OS
  27. Crystal structure of the co-crystalline adduct 4-((4,4-dimethyl-2,6-dioxocyclohexylidene)methylamino)-N-(4,6-dimethylpyrimidin-2-yl)benzenesulfonamide - acetic acid (1/1), C21H24N4O4S ⋅ C2H4O2
  28. Synthesis and crystal structure of 2-((5-chlorobenzo[c][1,2,5]thiadiazol-4-yl)amino)-4,5-dihydro-1H-imidazol-3-ium tetraphenylborate, C33H29BClN5S
  29. Crystal structure of (4-chlorophenyl)(3-ferrocenyl-5-(trifluoromethyl)-1H-pyrazol-1-yl)methanone, C21H14ClF3FeN2O
  30. Crystal structure of (S)-benzyl 3-(benzylcarba-moyl)-3,4-dihydroisoquinoline-2(1H)-carboxylate, C25H24N2O3
  31. Crystal structure of 5-acetyl-3-(3-fluoro-4-morpholinophenyl)oxazolidin-2-one, C15H17FN2O4
  32. Crystal structure of 2-(4-fluorophenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C19H16FIN2
  33. Crystal structure of methyl 1H-indole-2-carboxylate, C10H9NO2
  34. Crystal structure of 2,3-diphenyl-1-[(dipropylamino)acetyl]-1,3-diazaspiro[4.5]decan-4-one, C28H37N3O2
  35. Crystal structure of 1-(2H-1,3-benzodioxol-5-yl)-3-(1H-imidazol-1-yl)propan-1-one, C13H12N2O3
  36. Crystal structure of 2,9-dibromo-1,10-phenanthroline, C12H6Br2N2
  37. Crystal structure of 3-(adamantan-1-yl)-4-(4-fluorophenyl)-1H-1,2,4-triazole-5(4H)-thione, C18H20FN3S
  38. Crystal structure of trans-bis((E)-7-oxo-4-(phenyldiazenyl)cyclohepta-1,3,5-trien-1-olato)-κ2O,O′)-bis(pyridine-κN)cobalt(II), C36H28CoN6O4
  39. Crystal structure of 2-(4-methyl-3-phenylthiazol-2(3H)-ylidene)malononitrile, C13H9N3S
  40. Crystal structure of (Z)-3-(adamantan-1-yl)-1-(3-chlorophenyl)-S-benzylisothiourea, C24H27ClN2S
  41. Crystal structure of chlorido{[3-(η5-cyclopenta-dienyl)-2,2,3-trimethyl-1-phenylbutylidene] azanido-κN}[η2(N,O)-N,N-dimethylhydroxylaminato]titanium(IV), C20H27ClN2OTi
  42. Crystal Structure of 1,1′-dimethyl-[4,4′-bipyridine]-1,1′-diium tetrachloridozincate(II), C12H14Cl4N2Zn
  43. Crystal structure of 5-nitro-2-(pyrrolidin-1-yl)benzaldehyde, C11H12N2O3
  44. Crystal structure of 2,3-diphenyl-1-(morpholin-4-ylacetyl)-1,3-diazaspiro[4.5]decan-4-one, C26H31N3O3
  45. Crystal structure of 3,3-dimethyl-3,4-dihydro-1H-benzo[c]chromene-1,6(2H)-dione, C15H14O3
  46. Crystal structure of bis(2-(2-hydroxymethyl)pyridine-κ2N,O)-bis(pivalato-κO)nickel(II), C22H32N2NiO6
  47. Crystal structure of (1,10-phenanthroline-κ2N,N′)-bis(1H-pyrazole-3-carboxylato-κ2N,O)manganese(II) trihydrate, C20H20N6O7Mn
  48. The crystal structure of 3-aminopropan-1-aminium iodide, C3H11N2I
  49. Crystal structure of ethyl 1-(4-chlorophenyl)-5-methyl-1H-1,2,3-triazole-4 carboxylate, C12H12ClN3O2
  50. Crystal structure of 4,4′-((1Z,1′Z)-2,2′-(2,5-diethoxy-1,4-phenylene)bis(ethene-2,1-diyl))dipyridine, C24H24N2O2
  51. Crystal structure of (16S)-12,16-epoxy-11,14-dihydroxy-17(15/16)-abeo-3a,18-cyclo-8,11,13-abietatrien-7-one, C20H24O4
  52. Crystal structure of aquadichlorido(2,4,6-tri-2-pyridyl-1,3,5-triazine-κ3N,N′,N′′)nickel(II) monohydrate, C18H16Cl2N6NiO2
  53. Crystal structure of catena-poly[dichlorido-(μ-ethane-1,2-diyl-bis-(pyridyl-4-carboxylate-κN:N′)mercury(II)], C15H14Cl2HgN2O4
  54. Crystal structure of methyl 2-acetamido-5-chlorbenzoate, C10H10ClNO3
  55. Crystal structure of tetrakis(μ2-3,3-dimethylacrylato-κ2O,O′)-bis(2-aminopyrimidine-κN) dicopper(II), C28H38Cu2N6O8
  56. Crystal structure of 3-amino-8-methoxy-1-phenyl-1H-benzo[f]chromene-2-carbonitrile, C21H16N2O2
  57. Crystal structure of 4-(2-ammonioethyl)morpholin-4-ium dichloride monohydrate, C6H18Cl2N2O2
  58. Crystal structure of 1-(3-((5-bromo-2-hydroxybenzylidene)amino)phenyl)ethanone O-benzyl oxime, C22H19BrN2O2
  59. Crystal structure of 2-(4-(dimethylamino)-2-fluorophenyl)-1,3-bis(1H-1,2,4-triazol-1-yl)propan-2-ol monohydrate, C15H20FN7O2
  60. Crystal structure of 4-bromo-2-(1H-pyrazol-3-yl)phenol, C9H7BrN2O
  61. Crystal structure of 1,2,3,4,5-pentamethyl-1,3-cyclopentadiene, C10H16
Downloaded on 1.10.2025 from https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2016-0288/html?lang=en
Scroll to top button