Home Crystal structure of 1α,11-dihydroxyeremophil-9-en-8-one, C15H24O3
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Crystal structure of 1α,11-dihydroxyeremophil-9-en-8-one, C15H24O3

  • Glauco Morales , Adrián Paredes , Iván Brito EMAIL logo and Alejandro Cárdenas
Published/Copyright: March 7, 2017

Abstract

C15H24O3, orthorhombic, P212121 (no. 19), a = 7.5352(2) Å, b = 10.6639(3) Å, c = 17.5406(5) Å, V = 1409.47(7) Å3, Z = 4, Rgt(F) = 0.0315, wRref(F2) = 0.0838, T = 293 K.

CCDC no.:: 1532302

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless needle
Size:0.20 × 0.10 × 0.10 mm
Wavelength:Cu Kα radiation (1.54178 Å)
μ:6.5 cm−1
Diffractometer, scan mode:Bruker AXS, φ and ω
2θmax, completeness:117.8°, >99%
N(hkl)measured, N(hkl)unique, Rint:7847, 2025, 0.039
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1886
N(param)refined:170
Programs:Bruker programs [15], SHELX [16], OLEX2 [17], PLATON [18]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O11.0124(2)0.4721(2)0.51747(11)0.0617(5)
O21.1296(2)0.1353(2)0.70294(12)0.0664(6)
H21.14500.10230.66120.100*
O30.7241(2)0.51248(18)0.42609(9)0.0544(5)
H30.83240.51460.43040.082*
C10.9464(3)0.1587(3)0.71381(15)0.0526(6)
H10.88130.08180.70120.063*
C20.9148(4)0.1877(3)0.79778(16)0.0644(8)
H2A0.95250.11700.82860.077*
H2B0.98470.26010.81250.077*
C30.7196(4)0.2140(3)0.81210(14)0.0566(7)
H3A0.70350.23660.86520.068*
H3B0.65210.13810.80270.068*
C40.6468(3)0.3187(2)0.76214(13)0.0454(6)
H40.71180.39510.77580.055*
C50.6796(3)0.2957(2)0.67557(13)0.0392(5)
C60.6351(3)0.4167(2)0.63188(14)0.0432(6)
H60.50710.42520.62880.052*
H10B0.68010.48790.66040.052*
C70.7114(3)0.4207(2)0.55191(13)0.0401(5)
H70.67410.34250.52730.048*
C80.9108(3)0.4129(2)0.55891(13)0.0441(6)
C90.9774(3)0.3234(2)0.61459(14)0.0475(6)
H91.09870.30720.61530.057*
C100.8747(3)0.2633(2)0.66470(13)0.0420(6)
C110.6434(3)0.5275(2)0.50028(13)0.0434(6)
C120.4457(4)0.5153(3)0.48604(16)0.0584(7)
H12B0.40990.57520.44820.088*
H12A0.38240.53100.53260.088*
H12C0.41960.43220.46840.088*
C130.6876(4)0.6567(2)0.53158(16)0.0597(7)
H13A0.81410.66580.53520.090*
H13B0.63570.66610.58120.090*
H13C0.64100.71970.49800.090*
C140.5647(3)0.1874(2)0.64524(14)0.0488(6)
H14A0.60020.16730.59410.073*
H14B0.44220.21210.64550.073*
H14C0.58000.11510.67720.073*
C150.4520(4)0.3426(3)0.78074(16)0.0575(7)
H15A0.40630.40630.74740.086*
H15C0.44150.36990.83270.086*
H15B0.38570.26660.77380.086*

Source of material

Leaves and aerial parts of Senecio adenophyllus Meyen & Walp. collected at Socaire in Northern Chile ( 23° 36′ 40 s S; 67° 50′ 33 s W, 3230 m above sea level) were chopped and exhaustively extracted with EtOH:H2O (1:1, 10 L) during 1 week at room temperature. The alcoholic solution was filtered, evaporated under reduced pressure and freeze– dried to obtain a viscous mass of dark green extract. This residue (240 g) was suspended in 5 L methanol:water (1:9) and partitioned in succession with 5 L × 2 of n-hexane, 5 L × 2 of dichloromethane, 5 L × 2 of ethyl acetate and 5 L × 2 of n-butanol. After removal of the solvent in vacuo, the following residues were sequentially obtained: n-hexane-soluble (HF, 5 g), dichloromethane-soluble (DF, 15 g), ethyl acetate-soluble (EAF, 110 g), butanol-soluble (BF, 12 g), and finally residual water-soluble fraction (RWF, 70 g). A sample of EAF was separated by successive column chromatography over silica gel using n-hexane and EtOAc gradient with increasing amounts of EtOAc. Subsequent elution with n-hexane and EtOAc (7:3) gave a solid, which was then crystallized from acetone to afford needle-shaped crystals of the title compound; mp 161 °C. The crystals obtained were of low quality.

Experimental details

H atoms were located in the difference Fourier map, but refined with fixed individual displacement parameters, using a riding mode with C—H distances of 0.93 Å (for aromatic rings), C—H distances 0.97 Å, (for CH2), 0.96 Å (for CH3), with Uiso(H) values of 1.2Ueq(C) (for CH in aromatic and CH2), and 1.5Ueq(C) (for methyl group), O—H distances are 0.82 Å with Uiso(H) values of 1.5Ueq(O).

Discussion

The genus Senecio is the largest and most complex genus in the Asteraceae and include more than 1500 species with a worldwide distribution [1]. Aerial parts of several species of Senecio natives of the north of Chile are widely employed in the folk medicine as remedy for the altitudinal sickness [2], [3], [4]. In a continuation of a phytochemical research on Senecio species, which grow on the western flank of the Andes in northern Chile (ca 4000 m) [5], [6], [7], [8], we report the isolation of a new eremophylane sesquiterpenoid from Senecio adenophyllus Meyen & Walp. The title compound displayed spectral properties that are similar to those eremophylane sesquiterpenoids isolated from genus Cremanthodium, Ligularia and Senecio [1], [9], [10], [11], [12]. In order to ascertain the structure and secure the assignment of the stereochemistry of the title compound a single crystal structure determination was performed. Unfortunately, the absolute configuration was not determined by this method.

The structure consists of a sesquiterpenoid with an eremophilane skeleton. The methyl groups at C4 and C5 are equatorial and axial respectively. The hydroxyl group at C1 is α and equatorial oriented. The cyclohexene and cyclohexane rings are in a half-boat and chair conformation, respectively [QT = 0.4937(3) Å, φ2 = 268.66(5)°, θ = 124.03(2)°; QT = 0.547(3) Å, φ2 = 232.43(4)°, θ = 177.32°] [13]. The molecular conformation is stabilized by one strong intramolecular O—H⋯O hydrogen-bond (O3⋯O1 = 2.7344(1) Å, O3—H3⋯O1 = 135°) with graph-set motif S(6). In the crystal, molecules are linked by O—H⋯O, hydrogen-bonding interactions (O2⋯O3i = 2.8479(1) Å, O2—H2⋯O3i = 165°, symmetry code i = 1/2 + x, 1/2 − y, 1 − z) forming a chain structure along [100] direction with graph-set motif C(9) [14].

Acknowledgement

I.B. acknowledge Fondequip (EQM130021) for the funding to purchase the X-ray diffractometer.

References

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Received: 2016-9-13
Accepted: 2017-2-14
Published Online: 2017-3-7
Published in Print: 2017-5-24

©2017 Glauco Morales et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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