Home Crystal structure of (2-((4-bromo-2,6-dichlorophenyl)amino)phenyl) (morpholino)methanone, C17H15BrCl2N2O2
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Crystal structure of (2-((4-bromo-2,6-dichlorophenyl)amino)phenyl) (morpholino)methanone, C17H15BrCl2N2O2

  • Cuiya Zhang , Xiaojuan Han and Wenqiang Tang ORCID logo EMAIL logo
Published/Copyright: July 7, 2023

Abstract

C17H15BrCl2N2O2, monoclinic, P21/c (no. 14), a = 20.333(7) Å, b = 11.226(5) Å, c = 7.843(3) Å, β = 99.651(8)°, V = 1764.8(12) Å3, Z = 4, Rgt(F) = 0.0464, wRref(F2) = 0.1601, T = 173 K.

CCDC no.: 2265170

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless block
Size: 0.28 × 0.15 × 0.11 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 2.64 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θmax, completeness: 27.5°, >99 %
N(hkl)measured, N(hkl)unique, Rint: 14,352, 4029, 0.041
Criterion for Iobs, N(hkl)gt: Iobs > 2 σ(Iobs), 3126
N(param)refined: 217
Programs: Bruker [1], SHELX [2, 3], Olex2 [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
Br1 0.45144 (2) 0.31430 (4) 0.02326 (5) 0.03884 (17)
C1 0.54180 (19) 0.3659 (3) 0.1294 (5) 0.0352 (8)
C2 0.5516 (2) 0.4143 (4) 0.2945 (5) 0.0377 (9)
H2 0.515278 0.424312 0.355130 0.045*
C3 0.61562 (19) 0.4478 (3) 0.3692 (5) 0.0338 (8)
C4 0.67063 (18) 0.4387 (3) 0.2820 (5) 0.0317 (8)
C5 0.6572 (2) 0.3847 (4) 0.1180 (5) 0.0360 (9)
C6 0.5935 (2) 0.3488 (4) 0.0405 (6) 0.0375 (9)
H6 0.586225 0.313458 −0.071131 0.045*
C7 0.75279 (18) 0.5883 (3) 0.4131 (5) 0.0288 (7)
C8 0.70756 (19) 0.6835 (3) 0.3933 (5) 0.0335 (8)
H8 0.662592 0.670886 0.340053 0.040*
C9 0.7285 (2) 0.7964 (3) 0.4515 (5) 0.0342 (8)
H9 0.697765 0.860853 0.436010 0.041*
C10 0.7936 (2) 0.8160 (3) 0.5319 (5) 0.0348 (9)
H10 0.807111 0.892662 0.575535 0.042*
C11 0.83863 (19) 0.7230 (4) 0.5481 (5) 0.0330 (8)
H11 0.883723 0.737303 0.598896 0.040*
C12 0.81922 (18) 0.6083 (3) 0.4911 (4) 0.0283 (7)
C13 0.86979 (17) 0.5120 (3) 0.4918 (4) 0.0278 (7)
C14 0.9050 (2) 0.5306 (4) 0.8121 (5) 0.0363 (9)
H14A 0.864202 0.579752 0.804527 0.044*
H14B 0.943638 0.579903 0.863576 0.044*
C15 0.8996 (2) 0.4232 (4) 0.9250 (5) 0.0414 (10)
H15A 0.897151 0.450034 1.044008 0.050*
H15B 0.857996 0.379506 0.880435 0.050*
C16 0.9580 (2) 0.3029 (4) 0.7584 (5) 0.0383 (9)
H16A 0.916315 0.259863 0.712273 0.046*
H16B 0.995644 0.246341 0.763210 0.046*
C17 0.96734 (18) 0.4047 (3) 0.6401 (5) 0.0321 (8)
H17A 1.010868 0.443604 0.680368 0.039*
H17B 0.967290 0.374283 0.521574 0.039*
Cl1 0.62799 (6) 0.49342 (11) 0.58362 (13) 0.0475 (3)
Cl2 0.72302 (6) 0.36148 (11) 0.00644 (16) 0.0512 (3)
N1 0.73454 (16) 0.4730 (3) 0.3525 (5) 0.0366 (8)
H1 0.766180 0.418794 0.360247 0.044*
N2 0.91342 (15) 0.4916 (3) 0.6382 (4) 0.0308 (7)
O1 0.87243 (14) 0.4563 (3) 0.3558 (4) 0.0418 (7)
O2 0.95482 (17) 0.3455 (3) 0.9293 (4) 0.0437 (7)

1 Source of materials

A mixture of 2-((4-bromo-2,6-dichlorophenyl)amino)benzoic acid (3.59 g, 10 mmol), morpholine (1.11 g, 13 mmol), 2-(7-azabenzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HATU) (4.18 g, 11 mmol) and N,N-diisopropylethylamine (2.58 g, 20 mmol) was dissolved in N,N-dimethylformamide (20 mL). The mixture was stirred for 3 h at room temperature, until the TLC indicated the reaction was completed. The mixture was diluted with brine, and then extracted with ethyl acetate (3 × 30 mL). The organic phase was washed with brine (30 mL), dried with anhydrous sodium sulfate, and then concentrated under pressure. The title compound was separated by silica-gel column chromatography with ethyl acetate-petroleum ether (30 %) gradient solvent system. The target product was obtained as a white solid. Yield: 83.8 %.

2 Experimental details

All hydrogen atoms were placed in idealized positions. Their Uiso values were set to 1.2 Ueq of the parent atoms. The structure was solved using ShelXT [2] and refined using ShelXL [3] in Olex2 software [4].

3 Comment

Morpholine derivatives find wide applications in the field of medicinal chemistry as a key scaffold for the development of various drugs. In addition, these derivatives are used as important building blocks for the synthesis of heterocyclic compounds with various biological activities, as highlighted in recent academic publications [5, 6]. In this study, a novel morpholine derivative was synthesized and characterized by obtaining its single-crystal structure, providing valuable insights for solid-state properties and potential applications, as reported in recent publications in the field of crystallography [7], [8], [9].

The crystal structure of (2-((4-bromo-2,6-dichlorophenyl)amino) phenyl)(morpholino)methanone has been determined through single-crystal X-ray diffraction analysis.

The compound consists of the 2-((4-bromo-2,6-dichlorophenyl)amino)phenyl and the (morpholino)methanone moieties. The molecule adopts a non-planar geometry with dihedral angle of 59.3° between the two substituted benzene rings. The 4-bromo-2,6-dichlorophenyl moiety is positioned at one end of the molecule and, forms intermolecular interactions with neighboring molecules via π–π interactions, similar to structures reported in literatures [10], [11], [12], [13].


Corresponding author: Wenqiang Tang, Xianyang Key Laboratory of Molecular Imaging and Drug Synthesis, School of Pharmacy, Shaanxi Institute of International Trade & Commerce, Xianyang, Shaanxi, China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Key breeding program by collaborative innovation center of green manufacturing technology for traditional Chinese medicine in Shaanxi province (2019XT-1–05), key laboratory of molecular imaging and drug synthesis of Xianyang city (2021QXNL–PT-0008) and effective substances of traditional Chinese medicine innovative team in Shaanxi institute of international trade & commerce (SSY18TD01).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2023-05-26
Accepted: 2023-06-26
Published Online: 2023-07-07
Published in Print: 2023-10-26

© 2023 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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