Startseite The crystal structure of 4-(3-carboxy-1-cyclopropyl-6-fluoro-8-methoxy-4-oxo-1,4- dihydroquinolin-7-yl)-2-methylpiperazin-1-ium 2,5-dihydroxybenzoate methanol solvate, C27H32FN3O9
Artikel Open Access

The crystal structure of 4-(3-carboxy-1-cyclopropyl-6-fluoro-8-methoxy-4-oxo-1,4- dihydroquinolin-7-yl)-2-methylpiperazin-1-ium 2,5-dihydroxybenzoate methanol solvate, C27H32FN3O9

  • Shu-Ting Lin ORCID logo , Can Lou und Cheng-Jun Jiang ORCID logo EMAIL logo
Veröffentlicht/Copyright: 1. August 2023

Abstract

C27H32FN3O9, triclinic, P 1 (no. 2), a = 8.0932(4) Å, b = 11.8392(7) Å, c = 14.6782(8) Å, α = 87.860(3), β = 76.795(2), γ = 78.317(2)°, V = 1340.81(13) Å3, Z = 2, Rgt (F) = 0.0559, wRref (F2) = 0.1537, T = 170 K.

CCDC no.: 2261526

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Needle, colourless
Size: 0.07 × 0.04 × 0.03 mm
Wavelength: Ga Kα radiation (1.34139 Å)
μ: 0.59 mm−1
Diffractometer, scan mode: Zju Bruker D8 Venture, φ and ω-scans
θmax, completeness: 60.6°, >99 %
N(hkl)measured, N(hkl)unique, Rint: 25,694, 6034, 0.049
Criterion for Iobs, N(hkl)gt: Iobs° >° 2 σ(Iobs), 4834
N(param)refined: 379
Programs: Bruker programs [1], Olex2 [2], Shelx [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
F1 0.17243 (16) 0.55645 (10) 0.21156 (8) 0.0393 (3)
O1 0.09648 (15) 0.17812 (10) 0.30827 (8) 0.0230 (3)
O2 −0.27009 (18) 0.62348 (11) 0.51238 (9) 0.0290 (3)
O3 −0.47802 (19) 0.59090 (13) 0.66231 (10) 0.0355 (3)
H3 −0.414411 0.622037 0.619636 0.053*
O4 −0.5197 (2) 0.41360 (14) 0.69978 (10) 0.0423 (4)
N1 0.48541 (19) 0.21299 (15) 0.00895 (11) 0.0277 (4)
H1A 0.447158 0.260427 −0.035340 0.033*
H1B 0.575405 0.158000 −0.020707 0.033*
N2 0.25881 (19) 0.31199 (14) 0.17688 (10) 0.0247 (3)
N3 −0.19096 (18) 0.27729 (12) 0.45385 (10) 0.0197 (3)
C1 0.3949 (3) 0.36975 (19) 0.12547 (14) 0.0331 (5)
H1C 0.434045 0.413872 0.169678 0.040*
H1D 0.348778 0.424623 0.080479 0.040*
C2 0.5470 (3) 0.2812 (2) 0.07322 (16) 0.0392 (5)
H2Aa 0.584666 0.226090 0.121296 0.047*
H2Bb 0.618236 0.329129 0.029642 0.047*
C3 0.3428 (2) 0.15661 (17) 0.06044 (13) 0.0268 (4)
H3A 0.386933 0.099132 0.104350 0.032*
H3B 0.300451 0.115798 0.015509 0.032*
C4 0.1959 (2) 0.24602 (17) 0.11406 (12) 0.0255 (4)
H4A 0.144275 0.298973 0.069650 0.031*
H4B 0.104789 0.207531 0.151026 0.031*
C6 0.1349 (2) 0.36578 (16) 0.25373 (12) 0.0219 (4)
C7 0.0934 (2) 0.48511 (16) 0.27314 (13) 0.0254 (4)
C8 −0.0226 (2) 0.53359 (16) 0.35079 (13) 0.0241 (4)
H8 −0.039231 0.613791 0.363129 0.029*
C9 −0.1173 (2) 0.46428 (15) 0.41234 (12) 0.0198 (3)
C10 −0.0878 (2) 0.34473 (14) 0.39432 (11) 0.0182 (3)
C11 0.0469 (2) 0.29594 (15) 0.31892 (12) 0.0196 (3)
C12 −0.2417 (2) 0.51656 (15) 0.49504 (12) 0.0209 (3)
C13 −0.3270 (2) 0.43861 (16) 0.55594 (12) 0.0220 (4)
C14 −0.2995 (2) 0.32512 (16) 0.53172 (12) 0.0217 (4)
H14 −0.361915 0.276703 0.573032 0.026*
C15 0.2429 (3) 0.13175 (19) 0.34798 (16) 0.0375 (5)
H15A 0.341061 0.166977 0.317833 0.056*
H15B 0.274627 0.048058 0.337843 0.056*
H15C 0.212718 0.148669 0.415281 0.056*
C16 −0.4498 (2) 0.47880 (18) 0.64523 (13) 0.0283 (4)
C17 −0.1975 (2) 0.16028 (15) 0.42865 (13) 0.0248 (4)
H17 −0.101324 0.097270 0.439418 0.030*
C18 −0.2704 (2) 0.14664 (18) 0.34617 (14) 0.0312 (4)
H18A −0.218962 0.077086 0.306268 0.037*
H18B −0.309459 0.217166 0.312188 0.037*
C19 −0.3737 (3) 0.13052 (18) 0.44290 (16) 0.0367 (5)
H19A −0.385353 0.051088 0.462579 0.044*
H19B −0.475908 0.191257 0.468503 0.044*
C5a 0.7011 (4) 0.3261 (3) 0.0251 (3) 0.0471 (11)
H5Aa 0.794666 0.261653 −0.001370 0.071*
H5Ba 0.738690 0.368780 0.070004 0.071*
H5Ca,b 0.672370 0.377693 −0.025207 0.071*
C5Ab 0.6588 (8) 0.2245 (6) 0.1246 (5) 0.038 (2)
H5AAb 0.596026 0.182661 0.175304 0.057*
H5ABb 0.709498 0.280460 0.151105 0.057*
H5ACb 0.751195 0.169837 0.084135 0.057*
O5 −0.42524 (16) −0.06653 (14) 0.14809 (9) 0.0340 (3)
H5 −0.517897 −0.086701 0.175011 0.051*
O6 0.06314 (19) −0.18091 (16) 0.36160 (11) 0.0437 (4)
H6 0.160874 −0.171982 0.331122 0.066*
O7 0.28458 (17) −0.13235 (15) 0.22160 (12) 0.0426 (4)
O8 0.21267 (16) −0.08015 (13) 0.08635 (10) 0.0332 (3)
C20 −0.1354 (2) −0.08775 (15) 0.16279 (12) 0.0214 (4)
H20 −0.104927 −0.061998 0.100251 0.026*
C21 −0.3055 (2) −0.09712 (16) 0.20128 (12) 0.0220 (4)
C22 −0.3482 (2) −0.13669 (15) 0.29261 (13) 0.0233 (4)
H22 −0.463720 −0.144807 0.319070 0.028*
C23 −0.2241 (2) −0.16421 (16) 0.34505 (13) 0.0263 (4)
H23 −0.254927 −0.190832 0.407297 0.032*
C24 −0.0541 (2) −0.15309 (16) 0.30701 (13) 0.0251 (4)
C25 −0.0088 (2) −0.11568 (15) 0.21483 (12) 0.0210 (4)
C26 0.1749 (2) −0.10775 (16) 0.17019 (14) 0.0265 (4)
O9 −0.3516 (2) 0.61947 (16) 0.11429 (10) 0.0478 (4)
H9 −0.417198 0.615858 0.167221 0.072*
C27 −0.1757 (4) 0.5955 (3) 0.12276 (19) 0.0612 (8)
H27A −0.100121 0.608220 0.062467 0.092*
H27B −0.144294 0.515090 0.141407 0.092*
H27C −0.162032 0.646771 0.170242 0.092*
  1. Occupancies: a0.684 (7); b0.316 (7).

1 Source of materials

Gatifloxacin (GAT) (15.0 mg, 0.04 mmol) and 2,5-dihydroxybenzoic acid (15.0 mg, 0.07 mmol) were dissolved in methanol (5 mL) and water (1.5 mL) at 50 °C. Then, the solution was filtered and the filtrate placed in a 10 mL glass bottle. The glass bottle was covered with a porous film. Single crystal of the title compound were obtained after 7 days.

2 Experimental details

Absorption corrections were applied by using multi-scan program [1]. Using Olex2 [2], the structure was solved with the Shelxt [3] structure solution program and refined with the SHELXL [4] refinement package.

3 Comment

Gatifloxacin is a novel extended-spectrum fluoroquinolone with improved Gram-positive and anaerobe coverage compared with older agents such as ciprofloxacin [5]. The drug is available as tablets and aqueous solutions for intravenous therapy as well as eye drop formulation (Zymar). The crystal structure of 1-cyclopropyl-6-fluoro-8-methoxy-7-(3-methyl-1-piperazinyl)-1,4-dihydro -4-oxo-3-quinolinecarboxylic acid hydrochloride, [C19H23FN3O4]Cl (CCDC:692347) was reported [6]. As one of the fourth-generation quinolones, due to its poor solubility and easy to develop drug resistance, it is difficult to give full play to its clinical effects. In order to improve the physiochemical properties of gatifloxacin, salts were designed and synthesized by pharmaceutical salt forming technology. For example, the solubility of GAT with the pharmaceutical salts of 2,3-dihydroxybenzoic acid increased its solubility, the hygroscopic stability and the antibacterial activities in vitro of GAT-dihydroxybenzoic is also superior to GAT [7]. To improve the solubility of the fluoroquinolone drug gatifloxacin, a pharmaceutical salt of GAT with 2,5-dihydroxybenzoic acid is designed, synthesized, and characterized.

The title structure cystallizes in the triclinic P 1 space group with two asymmetric units in the unit cell, each containing a GAT cation and a 2,5-dihydroxybenzoate anion, where a proton is transferred from 2,5-dihydroxybenzoic acid to the piperazine N atom of GAT. N1H1A in the piperazine group participates in a classical N1–H1A⋯O91 hydrogen bond with methanol molecule (1 = −x, 1−y, −z; d(N1⋯O9) = 2.5162(19) Å; N1–H1A⋯O9 = 153.9°); N1H1B in the piperazine group is involved in a N1–H1B⋯O82 hydrogen bond to the oxygen atom in 2,5-dihydroxybenzoic acid (2 = 1−X, −Y, −Z; d(N1⋯O8) = 2.729(2) Å; N1–H1A⋯O8 = 164.4°); O9H9 in the carboxyl group of GAT participates in O9–H9⋯O44 hydrogen bond with methanol molecule (4 = −1−x, 1−y, 1−z; d(O9⋯O4) = 2.734(2) Å; O9–H9⋯O4 = 157.4°). Two oxygen atoms in two molecule of 2,5-dihydroxybenzoic acid form one hydrogen bonds: O5–H5⋯O73 (3 = −1 + x, +y, +z; d(O5⋯O7) = 2.6091(19) Å; O5–H5⋯O7 = 174.8°).


Corresponding author: Cheng-Jun Jiang, School of Biological and Chemical Engineering, Zhejiang University of Science and Technology, Hangzhou, Liuhe Road 318#, China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: None declared.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2023-05-11
Accepted: 2023-07-04
Published Online: 2023-08-01
Published in Print: 2023-10-26

© 2023 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. The crystal structure of (N-([1,1′:4′,1″-terphenyl]-4,4′-diethyl)-2-(bis(pyridin-2-ylmethyl)amino)acetamide-κ4N,N,N″, O)tri(nitrato-kO, O′) samarium(III) - methanol - acetonitrile (1/1/1), C40H39SmN8O14
  4. The crystal structure of 6,6′-(((2-(dimethylamino)ethyl)azanediyl)bis(methylene))bis(2-chloro-4-methyl phenolate-κ4N,N,O,O′)-(pyridine-2,6-dicarboxylato-N,O,O′)-titanium(IV), C27H27Cl2N3O6Ti
  5. N′-[(1E)-(4–Fluorophenyl)methylidene]adamantane-1-carbohydrazide, C18H21FN2O
  6. Crystal structure of 4-bromo-3-nitro-1H-pyrazole-5-carboxylic acid monohydrate, C4H2N3BrO4·H2O
  7. Crystal structure of dipyridine-k1N-tris(2,2,6,6-tetramethyl-5-oxohept-3-en-3-olato-k2O,O′)dysprosium(III), DyC43H67O6N2
  8. Crystal structure of cyclo[tetraiodido-bis{μ2-1-[(benzotriazol-1-yl)methyl]-1-H-1,3-(2-isopropyl-imidazol)-k2N:N}dicadmiun(II)], C26H30N10Cd2I4
  9. The crystal structure of tert-butyl (E)-3-(2-(benzylideneamino)phenyl)-1H-indole-1-carboxylate, C26H24N2O2
  10. The crystal structure of 4-(3-carboxy-1-cyclopropyl-6-fluoro-8-methoxy-4-oxo-1,4- dihydroquinolin-7-yl)-2-methylpiperazin-1-ium 2,5-dihydroxybenzoate methanol solvate, C27H32FN3O9
  11. Crystal structure of (μ2-1-(4,4′-bipyridine-κ2N:N′)-bis[diaqua-(4-iodopyridine-2,6-dicarboxylato-κ3O,N,O′)–cobalt(II)], C24H20Co2I2N4O12
  12. The crystal structure of dimethyl 4,4′-(10,20-diphenylporphyrin-5,15-diyl)dibenzoate dichloromethane solvate, C49H36N4O4Cl2
  13. (E)-2-((E)-4-(2,6,6-trimethylcyclohex-1-en-1-yl)but-3-en-2-ylidene)hydrazine-1-carbothioamide C14H23N3S1
  14. The crystal structure of [1-(4-(trifluoromethyl)phenyl)-3,4-dihydroquinolin-2(1H)-one], C16H12F3NO
  15. Crystal structure of (E)-2-amino-N′-((3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-4-yl)methylene)benzohydrazide – dimethylformamide – water (1/1/2), C15H16N4O3·C3H7NO·2H2O
  16. Crystal structure of 3-(4-bromophenyl)-5-methyl-1H-pyrazole, C10H9BrN2
  17. Crystal structure of 1,10-phenanthrolinium bromide dihydrate, C12H9N2Br
  18. Crystal structure of N-(4′-chloro-[1,1′-biphenyl]-2-yl)formamide, C13H10ClNO
  19. The crystal structure of nitroterephthalic acid, C8H5NO6
  20. Crystal structure of (2-((4-bromo-2,6-dichlorophenyl)amino)phenyl) (morpholino)methanone, C17H15BrCl2N2O2
  21. Crystal structure of tetraaqua-bis(ethanol-κO)-tetrakis(μ2-trifluoroacetate-κ2O:O′)-bis(trifluoroacetate-κ2O)digadolinium(III) Gd2C16H20O18F18
  22. The crystal structure of dimethyl 4,4′-[10,20-bis(2,6-difluorophenyl)porphyrin-5,15-diyl]dibenzoate chloroform solvate, C50H32Cl6F4N4O4
  23. The crystal structure of N,N′-((nitroazanediyl)bis(methylene))diacetamide, C6H12O4N4
  24. The crystal structure of [bis(2,2′-bipyridine-6-carboxylato-κ3N,N,O)magnesium(II)]dihydrate, C22H18N4O6Mg
  25. Crystal structure of poly[diaqua-(bis(μ2-1,4-bis(imidazol-1-ylmethyl)benzene)-κ2N,N′] cobalt(II)-tetraqua-bis(1,4-bis(imidazol-1-ylmethyl)benzene)-κ1N)-cobalt(II) di(2,5-thiophenedicarboxylate) dihydrate, C68H76Co2N16O16S2
  26. Crystal structure of poly[chlorido-μ2-chlorido-(μ2-1-[(2-ethyl-4-methyl-1H-imidazol-1-yl)methyl]-1H-benzotriazole-κN:N’)cadmium(II)], C13H15CdN5Cl2
  27. The crystal structure of (4-hydroxybenzenesulfonate)-k1O-6,6′-((1E,1′E)- (ethane-1,2-diylbis(azaneylylidene))bis(methaneylylidene)) bis(2-methoxyphenol)-κ2N,N,μ2O,O2O, O)-(methanol)-cobalt(II) sodium(I), C25H27CoN2NaO9S
  28. Crystal structure of (1-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl)(4-((2-methyl-6-(trifluoromethyl)pyrimidin-4-yl)amino)piperidin-1-yl)methanone, C17H18F6N6O
  29. Crystal structure of bis{[(cyclohexylimino)(phenylimino)-l5-(methyl)diethylazane-κ2N:N′]-(ethyl)-zinc(II)]}, C38H62N6Zn2
  30. Crystal structure of 2-[(4-bromobenzyl)thio]-5-(5-bromothiophen-2-yl)-1,3,4-oxadiazole, C13H8Br2N2OS2
  31. Crystal structure of 10-methoxy-7,11b,12,13-tetrahydro-6H-pyrazino [2′,3′:5,6]pyrazino[2,1-a]isoquinoline, C15H16N4O
  32. The crystal structure of 1-propyl-2-nitro-imidazole oxide, C6H9N3O3
  33. The crystal structure of 3-nitrobenzene-1,2-dicarboxylic acid–2-ethoxybenzamide (1/1), C17H16N2O8
  34. The structure of RUB-1, (C8H16N)6[B6Si48O108], a boron containing levyne-type zeolite, occluding N-methyl-quinuclidinium in the cage-like pores
  35. The crystal structure of diaqua-(naphthalene-4,5-dicarboxylate-1,8-dicarboxylic anhydride1O)-(4′-(4-(1H-benzimidazolyl-1-yl)phenyl)-2,2′:6′,2″-terpyridine-κ3N,N′,N″)–manganese(II) dihydrate, C42H27MnN5O9·2H2O
  36. Crystal structure of 6,6′-((1E,1′E)-hydrazine-1,2-diylidenebis(methanylylidene))bis (3-(3-bromopropoxy)phenol), C20H22Br2N2O4
  37. The crystal structure of 3-(2-hydroxyphenyl)-4-phenyl-6-(p-tolyl)-2H-pyran-2-one, C24H18O3
  38. Crystal structure of bis(μ2-2-(1,5-dimethyl–3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)imino)methyl)phenolato-κ4O:O,N,O′)-(nitrato-κ2O,O′)dicobalt(II), C36H32Co2N8O4
  39. Synthesis and crystal structure of (3E,5S,10S,13S,14S,17Z)-17-ethylidene-10,13-dimethylhexadecahydro-3H-cyclopenta[α] phenanthren-3-one O-(4-fluorobenzoyl) oxime, C28H36FNO2
  40. The crystal structure of 4-aminiumbiphenyl benzenesulfonate, C18H17NO3S
  41. Synthesis and crystal structure of 1-(7-hydroxy-3-(4-hydroxy-3-nitrophenyl)-4-oxo-4H-chromen-8-yl)-N,N-dimethylmethanaminiumnitrate, C18H17N3O9
  42. Crystal structure of N-(Ar)-N′-(Ar′)-formamidine, C14H12Br2N2O
  43. The crystal structure of 4-(2,4-dichlorophenyl)-2-(4-fluorophenyl)-5-methyl-1H-imidazole, C16H11Cl2FN2
  44. Crystal structure of 1-(4–chlorophenyl)-4-benzoyl-3-methyl-1H-pyrazol-5-ol, C17H13ClN2O2
  45. The crystal structure of 5-amino-1-methyl-4-nitroimidazole, C4H6O2N4
  46. Crystal structure of 1,3-diisopropyl-4,5-dimethylimidazol-2-ylidene-N,N′-bis(1,3-bis(2,6-diisopropylphenyl)-1,3-dihydro-2H-1,3,2-diazaborol-2-yl)-l2-germenediamine, C63H94B2GeN8
  47. The crystal structure of (bromido, chlorido)-tricarbonyl-(5,5′-dimethyl-2,2′-bipyridine)-rhenium(I), C15H12Br0.2Cl0.8N2O3Re1
  48. Crystal structure of [N(E),N′(E)]-N,N′-(1,4-phenylenedimethylidyne)bis-3,5-bis(propan-2-yl)-1H-pyrazol-4-amine, C26H36N6
  49. The crystal structure of poly[2-(4-carboxypyridin-3-yl)terephthalpoly[diaqua-(μ4-2-(6-carboxylatopyridin-3-yl)terephthalato-κ5O,N:O′:O″,O‴)]) cadmium(II)] dihydrate, C28H20Cd3N2O16
  50. Crystal structure of [tetraaqua-bis((3-carboxy-5-(pyridin-4-yl)benzoate-κ1N)cobalt(II)] tetrahydrate, C26H32CoN2O16
  51. Crystal structure of bis(μ2-azido-κ2N:N)-tetrakis(azido-κ1N)-tetrakis(1,10-phenanthroline-κ2N,N′)dibismuth(III), C48H32N26Bi2
  52. Crystal structure of (Z)-N-(4-(4-(4-((4,5,6-trimethoxy-3-oxobenzofuran-2(3H)-ylidene)methyl)phenoxy)butoxy)phenyl)acetamide, C30H31NO8
  53. Crystal structure of poly[diaqua-(μ2-1,3-di(1H-imidazol-1-yl)propane-κ2N:N′)-bis(μ2-5-carboxybenzene-1,3-dicarboxylato-O,O′:O″)-aqua-di-zinc dihydrate solvate], C27H28N4O16Zn2
  54. Crystal structure of 2-(3,5,5-trimethylcyclohex-2-en-1-ylidene)malononitrile, C12H14N2
  55. Crystal structure of chlorido-(5-nitro-2-phenylpyridine-κ2N,C)-[(methylsulfinyl)methane-κ1S]platinum(II), C13H13ClN2O3PtS
  56. The crystal structure of the co-crystal 1,4-dioxane–4,6-bis(nitroimino)-1,3,5-triazinan-2-one(2/1), C11H19N7O9
  57. Crystal structure of [N(E),N′(E)]-N,N′-(1,4-phenylenedimethylidyne)bis-3,5-dimethyl-1H-pyrazol-4-amine di-methanol solvate, C18H20N6·2(CH3OH)
  58. Crystal structure of catena-poly[bis(μ2-azido-k2N:N′)-(nitrato-K2N:N′)-bis(1,10-phenanthroline-K2N:N′)samarium(III)], C24H16N11O3Sm
  59. Crystal structure of (Z)-2-(4-((5-bromopentyl)oxy)benzylidene)-4,5,6-trimethoxybenzofuran-3(2H)-one, C23H25BrO6
  60. Crystal structure of bis(3,5-dimethyl-1H-pyrazol-4-ammonium) tetrafluoroterephthate, 2[C5H10N3][C8F4O4]
  61. Crystal structure of 2-amino-4-(2-fluoro-4-(trifluoromethyl)phenyl)-9-methoxy-1,4,5,6-tetrahydrobenzo[h]quinazolin-3-ium chloride, C20H18ClF4N3O
  62. Crystal structure of 6-(pyridin-3-yl)-1,3,5-triazine-2,4-diamine-sebacic acid (2/1), C13H17N6O2
Heruntergeladen am 30.11.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2023-0228/html
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