Home Crystal structure of dipyridine-k1N-tris(2,2,6,6-tetramethyl-5-oxohept-3-en-3-olato-k2O,O′)dysprosium(III), DyC43H67O6N2
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Crystal structure of dipyridine-k1N-tris(2,2,6,6-tetramethyl-5-oxohept-3-en-3-olato-k2O,O′)dysprosium(III), DyC43H67O6N2

  • Bo-Kai Ling ORCID logo EMAIL logo and Ling-Yu Huang
Published/Copyright: June 26, 2023

Abstract

DyC43H67O6N2, triclinic, P 1 (no. 2), a = 10.384(3) Å, b = 13.502(4) Å, c = 16.972(5) Å, α = 94.903(4)°, β = 98.580(4)°, γ = 105.417(4)°, V = 2248.6(11) Å3, Z = 2, R gt (F) = 0.0519, wR ref (F2) = 0.1489, T = 150 K.

CCDC no.: 1975852

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Yellow plate
Size: 0.30 × 0.30 × 0.10 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 1.71 mm−1
Diffractometer, scan mode: Bruker APEX-II
θmax, completeness: 25.0°, 98 %
N(hkl)measured, N(hkl)unique, Rint: 25,176, 7762, 0.041
Criterion for Iobs, N(hkl)gt: Iobs > 2 σ(Iobs), 7453
N(param)refined: 517
Programs: Bruker [1], Olex2 [2], SHELX [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
C1 0.1825 (12) 0.5262 (8) 0.6059 (7) 0.057 (3)
H1A 0.2444 0.5303 0.5672 0.085*
H1B 0.1174 0.5650 0.5902 0.085*
H1C 0.1334 0.4535 0.6065 0.085*
C2 0.3526 (9) 0.6816 (6) 0.6868 (6) 0.037 (2)
H2A 0.4081 0.7101 0.7399 0.056*
H2B 0.2947 0.7259 0.6712 0.056*
H2C 0.4120 0.6790 0.6474 0.056*
C3 0.2641 (8) 0.5728 (6) 0.6899 (5) 0.0246 (16)
C4 0.1672 (10) 0.5780 (8) 0.7481 (7) 0.047 (3)
H4A 0.1103 0.5080 0.7504 0.071*
H4B 0.1093 0.6212 0.7297 0.071*
H4C 0.2194 0.6081 0.8017 0.071*
C5 0.3452 (7) 0.4969 (6) 0.7178 (4) 0.0201 (15)
C6 0.4845 (8) 0.5222 (6) 0.7269 (5) 0.0234 (16)
H6 0.5312 0.5882 0.7149 0.028*
C7 0.5625 (7) 0.4556 (6) 0.7530 (4) 0.0198 (15)
C8 0.7176 (7) 0.4902 (6) 0.7577 (5) 0.0253 (17)
C9 0.7441 (10) 0.4812 (10) 0.6713 (6) 0.053 (3)
H9A 0.7058 0.4092 0.6461 0.080*
H9B 0.8421 0.5027 0.6719 0.080*
H9C 0.7012 0.5260 0.6408 0.080*
C10 0.7825 (10) 0.6017 (8) 0.7968 (7) 0.053 (3)
H10A 0.7501 0.6486 0.7630 0.079*
H10B 0.8814 0.6178 0.8026 0.079*
H10C 0.7577 0.6105 0.8499 0.079*
C11 0.7833 (9) 0.4191 (8) 0.8042 (7) 0.050 (3)
H11A 0.7627 0.4214 0.8587 0.075*
H11B 0.8819 0.4422 0.8070 0.075*
H11C 0.7475 0.3479 0.7767 0.075*
C12 0.2598 (8) 0.2296 (6) 0.5538 (4) 0.0223 (16)
C13 0.3451 (8) 0.2515 (6) 0.4874 (4) 0.0255 (17)
C14 0.4137 (9) 0.3677 (7) 0.5003 (5) 0.038 (2)
H14A 0.3445 0.4049 0.4928 0.057*
H14B 0.4745 0.3850 0.4614 0.057*
H14C 0.4663 0.3880 0.5550 0.057*
C15 0.4529 (9) 0.1932 (8) 0.4975 (6) 0.041 (2)
H15A 0.5055 0.2120 0.5523 0.061*
H15B 0.5137 0.2118 0.4588 0.061*
H15C 0.4086 0.1184 0.4880 0.061*
C16 0.2618 (9) 0.2203 (8) 0.4022 (5) 0.038 (2)
H16A 0.2141 0.1461 0.3945 0.057*
H16B 0.3226 0.2347 0.3630 0.057*
H16C 0.1956 0.2600 0.3945 0.057*
C17 0.1199 (7) 0.2102 (6) 0.5385 (4) 0.0231 (16)
H17 0.0767 0.2051 0.4843 0.028*
C18 0.0378 (7) 0.1975 (6) 0.5973 (4) 0.0188 (15)
C19 −0.1167 (8) 0.1774 (7) 0.5718 (5) 0.0318 (18)
C20 −0.1878 (11) 0.1577 (14) 0.6402 (7) 0.083 (4)
H20A −0.1695 0.0976 0.6631 0.125*
H20B −0.2857 0.1439 0.6218 0.125*
H20C −0.1555 0.2186 0.6813 0.125*
C21 −0.1728 (12) 0.0847 (13) 0.5069 (10) 0.095 (5)
H21A −0.1393 0.1022 0.4574 0.142*
H21B −0.2722 0.0661 0.4967 0.142*
H21C −0.1431 0.0259 0.5247 0.142*
C22 −0.1427 (12) 0.2685 (11) 0.5345 (10) 0.082 (4)
H22A −0.1021 0.3316 0.5728 0.123*
H22B −0.2409 0.2581 0.5203 0.123*
H22C −0.1023 0.2753 0.4859 0.123*
C23 0.0838 (8) −0.0634 (6) 0.8368 (5) 0.0307 (19)
C24 0.1142 (12) −0.1277 (7) 0.7673 (8) 0.061 (3)
H24A 0.1105 −0.0921 0.7195 0.091*
H24B 0.0466 −0.1958 0.7559 0.091*
H24C 0.2050 −0.1366 0.7819 0.091*
C25 −0.0597 (9) −0.0530 (7) 0.8122 (7) 0.045 (2)
H25A −0.0833 −0.0143 0.8567 0.067*
H25B −0.1246 −0.1222 0.7991 0.067*
H25C −0.0629 −0.0160 0.7650 0.067*
C26 0.0852 (11) −0.1198 (8) 0.9114 (7) 0.058 (3)
H26A 0.1741 −0.1321 0.9260 0.086*
H26B 0.0145 −0.1863 0.8997 0.086*
H26C 0.0680 −0.0772 0.9562 0.086*
C27 0.1840 (7) 0.0453 (6) 0.8479 (5) 0.0218 (16)
C28 0.2725 (9) 0.0860 (6) 0.9217 (5) 0.0308 (18)
H28 0.2662 0.0445 0.9641 0.037*
C29 0.3688 (8) 0.1831 (6) 0.9369 (5) 0.0253 (17)
C30a 0.6141 (18) 0.2505 (18) 1.0062 (10) 0.044 (4)
H30Aa 0.6308 0.1896 0.9786 0.066*
H30Ba 0.6761 0.2725 1.0580 0.066*
H30Ca 0.6293 0.3070 0.9730 0.066*
C30Aa 0.353 (3) 0.203 (2) 1.0855 (14) 0.078 (7)
H30Da 0.2775 0.2315 1.0685 0.117*
H30Ea 0.4008 0.2369 1.1391 0.117*
H30Fa 0.3169 0.1281 1.0873 0.117*
C31a 0.451 (3) 0.1389 (19) 1.0781 (12) 0.060 (5)
H31Aa 0.3573 0.1124 1.0864 0.090*
H31Ba 0.5103 0.1696 1.1298 0.090*
H31Ca 0.4809 0.0819 1.0545 0.090*
C31Aa 0.545 (3) 0.164 (3) 1.0408 (17) 0.088 (7)
H31Da 0.4962 0.0905 1.0282 0.131*
H31Ea 0.5828 0.1807 1.0984 0.131*
H31Fa 0.6192 0.1807 1.0101 0.131*
C32a 0.429 (3) 0.312 (2) 1.0546 (15) 0.062 (5)
H32Aa 0.4486 0.3662 1.0197 0.093*
H32Ba 0.4845 0.3369 1.1081 0.093*
H32Ca 0.3323 0.2949 1.0590 0.093*
C32Aa 0.496 (3) 0.341 (2) 1.0368 (18) 0.080 (8)
H32Da 0.5723 0.3713 1.0102 0.119*
H32Ea 0.5220 0.3642 1.0948 0.119*
H32Fa 0.4176 0.3646 1.0154 0.119*
C33 0.4585 (11) 0.2215 (8) 1.0211 (5) 0.045 (2)
C34 0.4016 (9) 0.0449 (7) 0.6851 (5) 0.0340 (19)
H34 0.3228 0.0389 0.6464 0.041*
C35 0.4646 (11) −0.0331 (7) 0.6807 (6) 0.045 (2)
H35 0.4288 −0.0917 0.6407 0.054*
C36 0.5801 (10) −0.0242 (7) 0.7355 (7) 0.046 (3)
H36 0.6259 −0.0764 0.7339 0.056*
C37 0.6278 (10) 0.0616 (8) 0.7924 (6) 0.043 (2)
H37 0.7075 0.0699 0.8310 0.051*
C38 0.5582 (8) 0.1356 (6) 0.7928 (5) 0.0302 (18)
H38 0.5923 0.1948 0.8323 0.036*
C39 0.2034 (10) 0.3953 (7) 0.9003 (5) 0.037 (2)
H39 0.2884 0.4390 0.8937 0.044*
C40 0.1430 (12) 0.4257 (8) 0.9615 (6) 0.048 (3)
H40 0.1847 0.4892 0.9957 0.058*
C41 0.0203 (11) 0.3616 (9) 0.9719 (6) 0.049 (3)
H41 −0.0231 0.3794 1.0142 0.059*
C42 −0.0374 (10) 0.2719 (8) 0.9202 (6) 0.042 (2)
H42 −0.1225 0.2272 0.9255 0.051*
C43 0.0287 (8) 0.2473 (7) 0.8606 (5) 0.0290 (18)
H43 −0.0126 0.1846 0.8253 0.035*
Dy01 0.29504 (3) 0.25154 (3) 0.75313 (2) 0.01750 (12)
N1 0.1483 (7) 0.3067 (5) 0.8492 (4) 0.0262 (14)
N2 0.4457 (7) 0.1281 (5) 0.7406 (4) 0.0263 (14)
O1 0.5118 (5) 0.3668 (4) 0.7715 (3) 0.0234 (11)
O2 0.2725 (5) 0.4109 (4) 0.7299 (4) 0.0313 (13)
O3 0.3274 (5) 0.2356 (5) 0.6238 (3) 0.0299 (13)
O4 0.0817 (5) 0.2027 (4) 0.6716 (3) 0.0218 (11)
O5 0.1819 (5) 0.0937 (4) 0.7879 (3) 0.0200 (11)
O6 0.3906 (5) 0.2453 (4) 0.8856 (3) 0.0229 (11)
  1. aOccupancy: 0.5.

1 Source of materials

A mixture of Dy(thd)3 (thd = 2,2,6,6–Tetramethyl-3,5-heptadione, 350 mg, 0.5 mmol) [5] and NH4F (37 mg, 1 mmol) were placed in a 30 mL scintillation flask, then 8 mL pyridine was added. The flask was sealed and heated at 120 °C for 72 h. Thereafter, the solution was then cooled to room temperature and filtered. Light yellow block crystals were isolated by evaporation (yield 30 %, based on Dy).

2 Experimental details

Absorption corrections were used by using multi-scan program [1]. Using Olex2 [2], the structure was solved with the ShelXT [3] structure solution program and refined with the ShelXL [4] refinement package. The H atoms were fixed, fixed Uiso were set to 1.2 times of all C(H) groups.

3 Comment

Due to the unique magnetic properties, the dysprosium-based compounds are widely used in single-molecule magnets (SMMs) to implement large-scale information storage and processing. Some Dy–SMMs, such as [Dy(Cpttt)2]+ [6], [(CpiPr5)Dy(Cp*)]+ [7] and (CpiPr5)2Dy2I3 [8], with brilliant performance have shocked this field. In this work, we report the single crystal structure of a dysprosium(III) complex, which provides a basis for studying Dy–SMMs.

The title compound crystallizes in the triclinic space group P 1 with two formula units in the unit cell. This compound is composed of three thd ligands, two pyridine and one Dy metal atom. The dysprosium center is octahedrally coordinated by six oxygen atoms of the thd ligands and two nitrogen atoms of the pyridine ring. The distances of Dy—O bonds are in range of 2.271–2.336 Å. The distances of Dy—N bonds are 2.587 and 2.583 Å. In addition, the N—Dy—N angle is 140.3°. All geometric parameters are in the expected ranges [9, 10].


Corresponding author: Bo-Kai Ling, Key Laboratory of Special Functional and Smart Polymer Materials of Ministry of Industry and Information Technology, Xi’an Key Laboratory of Functional Organic Porous Materials, School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi’an, Shaanxi 710072, P.R. China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: None declared.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2023-04-26
Accepted: 2023-06-08
Published Online: 2023-06-26
Published in Print: 2023-10-26

© 2023 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  44. Crystal structure of 1-(4–chlorophenyl)-4-benzoyl-3-methyl-1H-pyrazol-5-ol, C17H13ClN2O2
  45. The crystal structure of 5-amino-1-methyl-4-nitroimidazole, C4H6O2N4
  46. Crystal structure of 1,3-diisopropyl-4,5-dimethylimidazol-2-ylidene-N,N′-bis(1,3-bis(2,6-diisopropylphenyl)-1,3-dihydro-2H-1,3,2-diazaborol-2-yl)-l2-germenediamine, C63H94B2GeN8
  47. The crystal structure of (bromido, chlorido)-tricarbonyl-(5,5′-dimethyl-2,2′-bipyridine)-rhenium(I), C15H12Br0.2Cl0.8N2O3Re1
  48. Crystal structure of [N(E),N′(E)]-N,N′-(1,4-phenylenedimethylidyne)bis-3,5-bis(propan-2-yl)-1H-pyrazol-4-amine, C26H36N6
  49. The crystal structure of poly[2-(4-carboxypyridin-3-yl)terephthalpoly[diaqua-(μ4-2-(6-carboxylatopyridin-3-yl)terephthalato-κ5O,N:O′:O″,O‴)]) cadmium(II)] dihydrate, C28H20Cd3N2O16
  50. Crystal structure of [tetraaqua-bis((3-carboxy-5-(pyridin-4-yl)benzoate-κ1N)cobalt(II)] tetrahydrate, C26H32CoN2O16
  51. Crystal structure of bis(μ2-azido-κ2N:N)-tetrakis(azido-κ1N)-tetrakis(1,10-phenanthroline-κ2N,N′)dibismuth(III), C48H32N26Bi2
  52. Crystal structure of (Z)-N-(4-(4-(4-((4,5,6-trimethoxy-3-oxobenzofuran-2(3H)-ylidene)methyl)phenoxy)butoxy)phenyl)acetamide, C30H31NO8
  53. Crystal structure of poly[diaqua-(μ2-1,3-di(1H-imidazol-1-yl)propane-κ2N:N′)-bis(μ2-5-carboxybenzene-1,3-dicarboxylato-O,O′:O″)-aqua-di-zinc dihydrate solvate], C27H28N4O16Zn2
  54. Crystal structure of 2-(3,5,5-trimethylcyclohex-2-en-1-ylidene)malononitrile, C12H14N2
  55. Crystal structure of chlorido-(5-nitro-2-phenylpyridine-κ2N,C)-[(methylsulfinyl)methane-κ1S]platinum(II), C13H13ClN2O3PtS
  56. The crystal structure of the co-crystal 1,4-dioxane–4,6-bis(nitroimino)-1,3,5-triazinan-2-one(2/1), C11H19N7O9
  57. Crystal structure of [N(E),N′(E)]-N,N′-(1,4-phenylenedimethylidyne)bis-3,5-dimethyl-1H-pyrazol-4-amine di-methanol solvate, C18H20N6·2(CH3OH)
  58. Crystal structure of catena-poly[bis(μ2-azido-k2N:N′)-(nitrato-K2N:N′)-bis(1,10-phenanthroline-K2N:N′)samarium(III)], C24H16N11O3Sm
  59. Crystal structure of (Z)-2-(4-((5-bromopentyl)oxy)benzylidene)-4,5,6-trimethoxybenzofuran-3(2H)-one, C23H25BrO6
  60. Crystal structure of bis(3,5-dimethyl-1H-pyrazol-4-ammonium) tetrafluoroterephthate, 2[C5H10N3][C8F4O4]
  61. Crystal structure of 2-amino-4-(2-fluoro-4-(trifluoromethyl)phenyl)-9-methoxy-1,4,5,6-tetrahydrobenzo[h]quinazolin-3-ium chloride, C20H18ClF4N3O
  62. Crystal structure of 6-(pyridin-3-yl)-1,3,5-triazine-2,4-diamine-sebacic acid (2/1), C13H17N6O2
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