Home Crystal structure of 3-(1,3-dinitropropan-2-yl)-4H-chromen-4-one, C12H10N2O6
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Crystal structure of 3-(1,3-dinitropropan-2-yl)-4H-chromen-4-one, C12H10N2O6

  • Wu-Wu Li ORCID logo EMAIL logo , Min-Yan Zheng , Ning-Ning Han , Meng Yang , Jiao Li and Sha-Sha Cao
Published/Copyright: August 4, 2022

Abstract

C12H10N2O6, monoclinic, P21/c (no. 14), a = 14.6017(10) Å, b = 6.8095(4) Å, c = 13.0101(8) Å, β = 113.075(7)°, V = 1190.10(14) Å3, Z = 4, R gt (F) = 0.0405, wR ref (F 2) = 0.0976, T = 293 K.

CCDC no.: 2190531

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Yellow block
Size: 0.13 × 0.12 × 0.10 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.13 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θ max, completeness: 25.0°, >99%
N(hkl)measured, N(hkl)unique, R int: 5022, 2091, 0.028
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 1740
N(param)refined: 181
Programs: SHELX [1], Bruker [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
C1 0.44312 (13) 0.7713 (3) 0.54597 (14) 0.0166 (4)
C2 0.51132 (13) 0.7369 (3) 0.49654 (15) 0.0202 (4)
H2 0.488382 0.703780 0.421264 0.024*
C3 0.61178 (14) 0.7517 (3) 0.55845 (16) 0.0228 (4)
H3 0.656617 0.727432 0.525213 0.027*
C4 0.64678 (14) 0.8033 (3) 0.67131 (16) 0.0248 (5)
H4 0.714913 0.813757 0.712690 0.030*
C5 0.58145 (14) 0.8387 (3) 0.72175 (15) 0.0235 (5)
H5 0.604702 0.873016 0.796866 0.028*
C6 0.48016 (14) 0.8223 (3) 0.65837 (15) 0.0187 (4)
C7 0.31896 (13) 0.8486 (3) 0.65442 (15) 0.0202 (4)
H7 0.277923 0.874945 0.692265 0.024*
C8 0.27491 (13) 0.8022 (3) 0.54564 (14) 0.0163 (4)
C9 0.33550 (13) 0.7581 (3) 0.48188 (14) 0.0175 (4)
C10 0.16258 (13) 0.7980 (3) 0.48815 (15) 0.0183 (4)
H10 0.134810 0.841982 0.541668 0.022*
C11 0.12853 (13) 0.9405 (3) 0.38950 (15) 0.0213 (4)
H11A 0.174095 1.050908 0.407157 0.026*
H11B 0.131285 0.874663 0.324655 0.026*
C12 0.12402 (14) 0.5901 (3) 0.44964 (14) 0.0198 (4)
H12A 0.052132 0.592338 0.411119 0.024*
H12B 0.152104 0.541700 0.398153 0.024*
N1 0.15299 (11) 0.4580 (2) 0.54878 (12) 0.0208 (4)
N2 0.02524 (12) 1.0153 (3) 0.36135 (13) 0.0260 (4)
O1 0.29803 (9) 0.7139 (2) 0.38197 (10) 0.0224 (3)
O2 0.41817 (9) 0.8598 (2) 0.71304 (10) 0.0229 (3)
O3 0.20439 (10) 0.3135 (2) 0.55230 (11) 0.0290 (4)
O4 0.12560 (10) 0.5022 (2) 0.62346 (11) 0.0295 (4)
O5 −0.03394 (11) 0.9161 (2) 0.38404 (13) 0.0362 (4)
O6 0.00517 (12) 1.1751 (2) 0.31429 (13) 0.0418 (4)

Source of material

The mixture of 4-oxo-4H-chromene-3-carbaldehyde (261 mg, 1.5 mmol), di-tert-butyl malonate (368 mg, 1.7 mmol) and 4-dimethylaminopyridine (DMAP, 12 mg, 0.1 mmol) was stirred in nitromethane (50 mL) at room temperature for 40 min. The reaction mixture was poured into saturated NaCl solution (100 mL), and a yellow precipitate appeared. The precipitate was filtered and washed with saturated NaCl solution. The yellow precipitate was recrystallized form ethyl acetate to give 3-(1,3-dinitropropan-2-yl)-4H-chromen-4-one.

Experimental details

All hydrogen atoms were identified in difference Fourier syntheses and placed in geometrically idealized positions. The U iso values of the hydrogen atoms of methyl groups were set to 1.5U eq(C) and the U iso values of all other hydrogen atoms were set to 1.2U eq(C).

Comment

Chromone derivatives are naturally occurring compounds spread in the plant kingdom [3], and therefore present in representative amounts in the normal human diet [4]. Some chromone derivatives possess biological activities including antiinflammatory [5], anti—HIV [6], anticancer [7], antibacterial [8], antimalarial [9], and antitumor [10], as well as treatment of Alzheimer’s disease [11].

The molecular structure of title compound (cf. the figure) consists of a benzene ring A (C1—C6), a pyranone ring B (C1/C6—C9/O2) and a 1, 3-dinitropropyl group. Ring A and ring B constitute the chromone skeleton. The chromone skeleton is essentially planar, with mean deviation from this plane of 0.0054(3) Å. The dihedral angle between rings A and B is 0.72(2)°, similar to the value found in literature [1213]. In the crystal structure of title compound, the chromone skeleton is stabilized by three weak intramolecular hydrogen bonds, with C11—H11B⃛O1 to be 2.502(4) Å, C12—H12B⃛O1 to be 2.512(5) Å and C12—H12A⃛O5 to be 2.493(3) Å. Additionally, hydrogen bonds C2—H2⃛O2 and C7—H7⃛O7 connect neighboring molecules to form chain structure along c axis. Neighboring molecules were linked together through C11—H11⃛O3, C11—H11B⃛O6 and C12—H12A⃛O4 to form another chain structure along b axis.


Corresponding author: Wu-Wu Li, College of Chemistry & Chemical Engineering, Xianyang Normal University, Xianyang, 712000, P. R. China, E-mail:

Funding source: Scientific Research Program Funded by Shaanxi Provincial Education Department

Award Identifier / Grant number: 21JK0654

Funding source: Natural Science Basic Research Plan Funded by Shaanxi Province

Award Identifier / Grant number: 2020JM1543

Funding source: Scientific Research Project Funded by Xianyang Normal University

Award Identifier / Grant number: XSYK21041, XSKY20012

Funding source: University Students Research and Innovation Training Program of Shaanxi Province

Award Identifier / Grant number: S202110722039, S202210722009

Funding source: Academic Backbone Project Funded by Xianyang Normal University

Award Identifier / Grant number: XSYXSGG202104

Funding source: Qing—Lan Talents Project Funded by Xianyang Normal University

Award Identifier / Grant number: XSYQL201904

Funding source: Open Project Program of Shihezi University

Award Identifier / Grant number: XSYC202118

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This research was supported by the Scientific Research Program Funded by Shaanxi Provincial Education Department (No. 21JK0654), the Natural Science Basic Research Plan Funded by Shaanxi Province (No. 2020JM1543), the Scientific Research Project Funded by Xianyang Normal University (No. XSYK21041, XSKY20012), the University Students Research and Innovation Training Program of Shaanxi Province (No. S202110722039, S202210722009), the Academic Backbone Project Funded by Xianyang Normal University (No. XSYXSGG202104), Qing—Lan Talents Project Funded by Xianyang Normal University (No. XSYQL201904) and the Seventh Batch of College Student Innovation and Entrepreneurship Base Team of Xianyang Normal University (No. XSYC202118).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2022-06-17
Accepted: 2022-07-15
Published Online: 2022-08-04
Published in Print: 2022-10-26

© 2022 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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