Startseite The crystal structure of the cocrystal 4-hydroxy-3,5-dimethoxybenzoic acid–pyrazine-2-carboxamide(1/1), C14H15N3O6
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The crystal structure of the cocrystal 4-hydroxy-3,5-dimethoxybenzoic acid–pyrazine-2-carboxamide(1/1), C14H15N3O6

  • Cheng-Jun Jiang ORCID logo EMAIL logo , Ying-Fan Xia ORCID logo und Yan-Song Xie
Veröffentlicht/Copyright: 14. Juli 2022

Abstract

C14H15N3O6, monoclinic, C2/c (no. 15), a = 30.1620(13) Å, b = 3.8559(2) Å, c = 27.3897(13) Å, β = 117.610(4)°, V = 2822.7(3) Å3, Z = 8, Rgt (F) = 0.0332, wRref (F 2) = 0.0904, T = 170 K.

CCDC no.: 2164792

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.48 × 0.32 × 0.25 mm
Wavelength: MoKα radiation (0.71073 Å)
μ: 0.12 mm−1
Diffractometer, scan mode: Bruker D8 Venture, φ and ω
θ max, completeness: 27.1°, >99%
N(hkl)measured, N(hkl)unique, R int: 26886, 3108, 0.023
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 2917
N(param)refined: 212
Programs: Bruker [1], Olex2 [2], SHELX [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
O1 0.56662 (3) 0.0655 (2) 0.54435 (3) 0.02445 (18)
N1 0.60173 (3) 0.5166 (2) 0.45423 (4) 0.0218 (2)
N2 0.69684 (3) 0.3579 (3) 0.53927 (4) 0.0249 (2)
N3 0.51929 (3) 0.2810 (3) 0.45875 (4) 0.0259 (2)
H3A 0.491294 0.205486 0.457612 0.031*
H3B 0.518530 0.394685 0.430512 0.031*
C1 0.64322 (4) 0.6002 (3) 0.45116 (4) 0.0242 (2)
H1 0.640595 0.720280 0.419648 0.029*
C2 0.69032 (4) 0.5150 (3) 0.49321 (4) 0.0245 (2)
H2A 0.718939 0.571263 0.488832 0.029*
C3 0.65518 (4) 0.2764 (3) 0.54266 (4) 0.0222 (2)
H3 0.657912 0.166425 0.574972 0.027*
C4 0.60813 (3) 0.3495 (3) 0.49992 (4) 0.0184 (2)
C5 0.56231 (4) 0.2240 (3) 0.50270 (4) 0.0193 (2)
O2 0.61489 (3) 0.2606 (3) 0.65175 (3) 0.0328 (2)
H2 0.595774 0.212153 0.618624 0.049*
O3 0.54274 (3) 0.4049 (3) 0.65135 (3) 0.0338 (2)
O4 0.60475 (3) 0.8957 (2) 0.84733 (3) 0.02575 (19)
O5 0.70135 (3) 0.8013 (2) 0.89552 (3) 0.02545 (19)
H5 0.732144 0.780853 0.905804 0.038*
O6 0.74877 (3) 0.4689 (2) 0.84692 (3) 0.02410 (18)
C6 0.58786 (4) 0.3805 (3) 0.67547 (4) 0.0231 (2)
C7 0.61908 (4) 0.4811 (3) 0.73399 (4) 0.0203 (2)
C8 0.59544 (4) 0.6379 (3) 0.76150 (4) 0.0206 (2)
H8 0.560301 0.674983 0.743037 0.025*
C9 0.62340 (4) 0.7399 (3) 0.81596 (4) 0.0195 (2)
C10 0.67530 (4) 0.6872 (3) 0.84306 (4) 0.0191 (2)
C11 0.69814 (4) 0.5182 (3) 0.81547 (4) 0.0188 (2)
C12 0.67039 (4) 0.4186 (3) 0.76080 (4) 0.0200 (2)
H12 0.686214 0.309061 0.741916 0.024*
C13 0.55209 (4) 0.9394 (3) 0.82403 (5) 0.0292 (3)
H13A 0.540312 1.083520 0.790878 0.044*
H13B 0.543925 1.052702 0.850882 0.044*
H13C 0.535728 0.712219 0.814259 0.044*
C14 0.77398 (4) 0.2809 (3) 0.82252 (4) 0.0242 (2)
H14A 0.771375 0.407308 0.790254 0.036*
H14B 0.758633 0.051426 0.811122 0.036*
H14C 0.809313 0.254247 0.849353 0.036*

Source of material

The mixture of pyrazinamide and syringic acid (4-hydroxy- 3,5-dimethoxybenzoic acid) with a molar ratio of 1:1 was dissolved in ethyl acetate, and the resulting mixed solution was stirred at a constant temperature water bath at 50 °C to obtain a clear solution. The solution was filtered and placed in a sample vial, covered with membrane which was punctured. The filtrate was slowly evaporated at room temperature to obtain crystals of the title compound after seven days.

Experimental details

Absorption corrections were applied by using multi-scan program [1]. Using Olex2 [2], the structure was solved with the ShelXT [3] structure solution program using Intrinsic Phasing and refined with the ShelXL [4] refinement package. The H atoms were fixed, fixed Uiso were set to 1.2 times of all C(H) groups and N(H,H) groups; 1.5 times of C(H,H,H) groups and O(H) groups.

Comment

Pyrazinamide (PZA) belongs to nicotinamide analogs. Because of its good antibacterial activity and strong bactericidal effect, it is widely used in the treatment of tuberculosis in clinical practice. However, due to its low water solubility and low bioavailability, its oral absorption effect is severely inhibited. In recent years, drug co-crystal technology, as an emerging technology, enhances the efficacy of drugs by improving the solubility and permeability of drugs [5]. Compared with other crystal engineering techniques, drug co-crystals have unique advantages in reviving older small-molecule drugs. Cocrystals of pyrazinamide were obtained with 2,4-dihydroxybenzoic acid (CCDC: 1554966, NEFFEM), 2,3-dihydroxybenzoic acid (CCDC: 1554791, NEFGIR), 2,6-dihydroxybenzoic acid (CCDC: 1554970, NEFGEN) [6], pyrogallol (CCDC: 904232, HEDRAL),temozolomide (CCDC: 926521, KIJSED) [7], fumaric acid (CCDC: 849830, LATTIL), succinic acid (CCDC: 849831, LATTOR) [8] and so on.

The is one 4-hydroxy-3,5-dimethoxybenzoic acid molecule and one pyrazine-2-carboxamide molecule in the asymmetric unit (see the figure). In the unit cell of the title crystal, the main forces include the p-p stacking between the pyrazine ring and the benzene ring, and the formation of intermolecular hydrogen bonds between the amide group on pyrazinamide and the carboxyl group on syringic acid. The O1 atom on the amide group of the pyrazinamide molecule is a hydrogen bond acceptor, and the H2 atom on the carboxyl group(O2–H2) of syringic acid is a hydrogen bond donor, forming an intermolecular hydrogen bond [O2–H2–O1; d(O2–O1) = 2.7145(10) Å]. The N2 atom on the pyrazine ring is a hydrogen bond acceptor, and the H5 atom on the hydroxyl group (O5–H5) of the syringic acid molecule acts as a hydrogen bond donor, forming an intermolecular hydrogen bond [O5–H5–N2; d(O5–N2) = 2.7538(11) Å]. Amides on pyrazinamide molecules form intramolecular hydrogen bonds [O1–H3A–N3; d(O1–N3) = 2.8814(12) Å].

The structure of the pure 4-hydroxy-3,5-dimethoxybenzoic acid has been reported [9]. It has also been shown that cocrystals of this acid with pyridine-3-carboxamide can be obtained [9].


Corresponding author: Cheng-Jun Jiang, School of Biological and Chemical Engineering, Zhejiang University of Science and Technology, Hangzhou, Liuhe Road 318#, China, E-mail:

Award Identifier / Grant number: LGJ20B060001

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was supported by the Zhejiang Province Basic Public Welfare Research Project (LGJ20B060001).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2022-06-12
Accepted: 2022-06-28
Published Online: 2022-07-14
Published in Print: 2022-10-26

© 2022 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. The crystal structure of 3-(1-(2-((5-methylthiophen-2-yl)methylene)hydrazinyl)ethylidene)chroman-2,4-dione, C17H14N2O3S
  4. Crystal structure of chlorido-(η 6-toluene)(5,5′-dimethyl-2,2′-bipyridine-κ2 N,N′)ruthenium(II) hexafluoridophosphate(V) ─ acetone (1/1) C22H26ClN2ORuPF6
  5. Crystal structure of 4-(((2-(3-(1-(3-(3-cyanophenyl)-6-oxopyridazin-1(6H)-yl)ethyl)phenyl) pyrimidin-5-yl)oxy)methyl)-1-methylpiperidin-1-ium chloride monohydrate, C30H33N6O2Cl
  6. The crystal structure of 2-chloro-N-((2-chlorophenyl)carbamoyl)nicotinamide, C13H9Cl2N3O2
  7. Crystal structure of 9-(t-butyl)-3,11-dihydro-6H-pyrazolo [1,5-a]pyrrolo[3′,2′:5,6]pyrido[4,3-d]pyrimidin-6-one hemihydrate, C30H32N10O3
  8. Crystal structure of di-μ2-hydroxido-tetrakis(6-methylpyridine-2-carboxylato-k2 N,O) diiron(III) trihydrate C28H32Fe2N4O13
  9. Crystal structure of catena-poly[qua-(μ2-2-aminoisophthalat-κ3 O,O′:O′′)(1,10-phenanthroline-κ2 N,N′)manganese(II)] C20H15MnN3O5
  10. Crystal structure of poly[(bis(isothiocyano)-bis(μ 2-(E)-N′-(pyridin-4-ylmethylene)isonicotinohydrazide))iron(II) – methanol – 1,4-dioxane (1/2/2), C36H44FeN10O8S2
  11. Crystal structure of (E)-N′-(1-(5-chloro-2-hydroxyphenyl)propylidene)-4-hydroxybenzohydrazide, C16H15ClN2O3
  12. Crystal structure of bis(μ2-benzoato-k2O:O′)-bis(μ2-benzoato-k3O,O′:O′)dinitrato-k2O,O′-bis(phenanthroline-k2 N,N′)dierbium(III), C52H36Er2N6O14
  13. Crystal structure of 4-ethyl-2-{[(4-nitrophenyl)methyl]sulfanyl}-6-oxo-1,6-dihydropyrimidine-5-carbonitrile, C14H12N4O3S
  14. Synthesis and crystal structure of 1-((3R,10S,13R,17S)-10,13-dimethyl-3- (phenylamino)hexadecahydro-1H-cyclopenta[α] phenanthren-17-yl)ethan-1-one, C27H39NO
  15. Crystal structre of 1,4-bis(bromomethyl)-2,3,5,6-tetramethylbenzene, C12H16Br2
  16. Crystal structure of 2-(adamantan-1-yl)-5-(3,5-dinitrophenyl)-1,3,4-oxadiazole, C18H18N4O5
  17. Crystal structure of (E)-N′-benzylidene-4-nitrobenzohydrazide – methanol (1/1), C15H15N3O4
  18. The crystal structure of 3-(2-bromophenyl)-1,5-di-p-tolylpentane-1,5-dione, C25H23BrO2
  19. Crystal structure of catena-poly[(μ 2-4,4′-bipyridine-κ2 N:N′)-bis(4-bromobenzoato-κ1 O)zinc(II)], C24H16Br2N2O4Zn
  20. Crystal structure of 1,1′-(1,2-ethanediyl)bis(pyridin-1-ium) bis(1,2-dicyanoethene-1,2-dithiolato-κ2 S:S)zinc(II), C20H14N6ZnS4
  21. Crystal structure of pentacarbonyl-(μ2-propane-1,3-dithiolato-κ4 S:S,S′:S′)-(diphenyl(o-tolyl)phosphine-κ1 P)diiron (Fe-Fe), C27H23Fe2O5PS2
  22. The crystal structure of the cocrystal 4-hydroxy-3,5-dimethoxybenzoic acid–pyrazine-2-carboxamide(1/1), C14H15N3O6
  23. The crystal structure of dichlorido-bis((RS)-2-(4-chlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)hexanenitrile-κ1 N)zinc(II), C30H34Cl4N8Zn
  24. Crystal structure of the cocrystal 2,4,6-triamino-1,3,5-triazine – 1H-isoindole-1,3(2H)-dione – methanol (1/1/1), C12H15N7O3
  25. The crystal structure of methyl 4-((3,5-di-tert-butyl-4-oxocyclohexa-2,5-dien-1-ylidene)methyl) benzoate, C23H28O3
  26. Crystal structure of (poly[µ2-(1H-pyrazol-1-yl)methyl]-1H-benzotriazole-κ 2 N:N)-(nitrato-κ 2 O:O′) silver(I), C9H8AgN7O3
  27. Crystal structure of tetraaqua-bis[4-(1H-1,2,4-triazol-1-yl)benzoato-k1 N]cadmium(II), C18H20CdN6O8
  28. The crystal structure of diaqua-bis(pyrazolo[1,5-a]pyrimidine-3-carboxylato-κ2N,O)nickel(II) dihydrate, C14H16N6O8Ni
  29. Crystal structure of poly[μ2-aqua-aqua-(μ2-1,3-di(1H-imidazol-1-yl)propane-κ2 N:N′)-(μ2-4,4′-(1H-1,2,4-triazole-3,5-diyl)dibenzoato-κ2 O:O′)-(μ4-4,4′-(1H-1,2,4-triazole-3,5-diyl)dibenzoato-κ5 O,O′:O″:O′″:O′″)dicobalt(II)] – water – dimethylformamide (1/1/1) C44H43N11O12Co2
  30. Crystal structure of N-((Z)-amino(((E)-amino(phenylamino)methylene) amino)methylene)benzenaminium chloride – benzo[f]isoquinolino[3,4-b][1,8]naphthyridine – tetrahydrofurane (1/2/2), C60H54ClN11O2
  31. The crystal structure of Chrysosplenol D, C18H16O8
  32. Crystal structure of poly[deca aqua-bis(μ 4-2-(triazol-1-yl)-benzene-1,3,5-tricarboxylato)- bis(μ 5-2-(triazol-1-yl)-benzene-1,3-dicarboxylato-5-carboxyl acid) pentamanganese(II)] dihydrate, C44H42Mn5N12O36
  33. Synthesis and crystal structure of (E)-1-(4-(((E)-3-(tert-butyl)-2-hydroxybenzylidene)amino)phenyl)ethan-1-one O-methyl oxime, C20H24N2O2
  34. The crystal structure of 4,4′-dichloro-6,6′-dimethoxy-2,2′,3,3′,5,5′- hexanitroazobenzene, C14H6N8O14Cl2
  35. Crystal structure of N 2,N 4-dimesitylpentane-2,4-diamine, C23H34N2
  36. Crystal structure of (1,4,7,10,13,16-hexaoxacyclooctadecane-κ 6O6)potassium(2-methylphenylamino)ethyl-2-methylphenylamide ammoniate (1/3.5), [K(18-crown-6)](o-CH3C6H4)NH(CH2)2N(o-CH3C6H4) 3.5 NH3, C28H53.5KN5.5O6
  37. The crystal structure of N′,N″,2-tris((E)-5-chloro-2-hydroxybenzylidene)hydrazine-1-carbohydrazonhydrazide hydrochloride – methanol (1/3), C25H30Cl4N6O6
  38. Crystal structure of (E)-7-bromo-2-(3,5-dimethoxybenzylidene)-3,4-dihydronaphthalen-1(2H)-one, C19H17BrO3
  39. Crystal structure of (E)-N′-(1-(5-chloro-2-hydroxyphenyl) ethylidene)-4-hydroxybenzohydrazide, C15H13ClN2O3
  40. {2-(((2-aminoethyl)imino)methyl)-6-bromophenolato-κ3 N,N′,O}iron(III) nitrate, C18H20Br2FeN5O5
  41. Crystal structure of 2-(tert-pentyl)anthracene-9,10-dione, C19H18O2
  42. Crystal structure of 5,5′-(1,4-phenylene)bis(1H-imidazol-3-ium) bis(2-(2-(carboxymethyl)phenyl)acetate), C32H30N4O8
  43. Crystal structure of N 2,N 6-bis(2-(((E)-naphthalen-1-ylmethylene)amino)phenyl)pyridine-2,6-dicarboxamide, C41H29N5O2
  44. The crystal structure of 3-amino-1,2,4-triazolium 2,4,5-trinitroimidazolate, C5H5O6N9
  45. Hydrogen bonded dimers in the crystal structure of 2-chloro-N-(phenylcarbamoyl)nicotinamide, C26H20Cl2N6O4
  46. The crystal structure of 4,4′-bipyridine-5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one-water(1/2/2), C40H32N2O12
  47. Crystal structure of N,N'-bis(4-fluoro-salicylaldehyde)-3,6-dioxa-1,8-diaminooctane, C20H22F2N2O4
  48. Crystal structure of 3-(1,3-dinitropropan-2-yl)-4H-chromen-4-one, C12H10N2O6
  49. The crystal structure of (4-(2-bromoethoxy)-phenyl)(phenyl)methanone, C15H13BrO2
  50. Crystal structure of (E)-7-bromo-2-(4-methoxybenzylidene)-3,4-dihydronaphthalen-1(2H)-one, C18H15BrO2
  51. Crystal structure of dichlorido-tetrakis((E)-(RS)-1-(2,4-dichlorophenyl)-4,4-dimethyl-2-(1,2,4-triazol-1-yl)pent-1-en-3-ol-κ 1 N)cadmium(II), C60H68O4N12Cl10Cd
  52. Crystal structure of diaqua-diphenanthroline-κ2 N,N′-bis(μ2-2-carboxy-3,4,5,6-tetrafluorobenzoato-κ2 O:O′)-bis(μ2-tetrafluorophthalato-κ3 O,O′:O′)didysprosium(III) – phenanthroline (1/2), C80H38Dy2F16N8O18
  53. Crystal structure of bis(μ2-2-oxido-2-phenylacetato-κ3 O,O′:O′)-bis(N-oxido-benzamide-κ2 O,O′)-bis(propan-2-olato-κ1 O)dititanium(IV), C36H38N2O12Ti2
  54. Crystal structure of poly[diaqua-(μ2-1H-benzo[d][1,2,3]triazole-5-carboxylato-κ2 O:O′)(μ2-oxalato-κ4O,O:O″,O′″)europium(III)] monohydrate, C9H10N3O9Eu
  55. Crystal structure of bis((N-methyl-2-oxyethyl)amine)-bis(μ 2-N,N,N-tris(2-oxoethyl)amine)-bis(isopropoxy)-bis(μ 3-oxo)tetratitanium(IV)– isopropanol (1/2), C34H76N4O16Ti4
  56. Synthesis and crystal structure of ethyl 4-((4-iodobenzyl)amino)benzoate, C16H16INO2
  57. Crystal structure of (Z)-2-(tert-butyl)-5-((5-(tert- butyl)-2H-pyrrol-2-ylidene)(mesityl)methyl)-1H-pyrrole, C26H34N2
  58. Crystal structure of dimethylammonium poly[μ4-1,1′-(1,4- phenylenebis(methylene))bis(1H-pyrazole-3,5-dicarboxylato-κ6 N,O:O′:N′,O″:O‴) manganese(II)], C22H26MnN6O8
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