Home Crystal structure of 1-(2H-1,3-benzodioxol-5-yl)-3-(1H-imidazol-1-yl)propan-1-one, C13H12N2O3
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Crystal structure of 1-(2H-1,3-benzodioxol-5-yl)-3-(1H-imidazol-1-yl)propan-1-one, C13H12N2O3

  • Reem I. Al-Wabli , Alwah R. Al-Ghamdi , Hazem A. Ghabbour and Mohamed I. Attia EMAIL logo
Published/Copyright: March 23, 2017

Abstract

C13H12N2O3, monoclinic, P21/n (no. 14), a = 7.3322(5) Å, b = 8.0341(5) Å, c = 19.4479(14) Å, β = 95.775(2)°, V = 1139.82(13) Å3, Z = 4, Rgt(F) = 0.0533, wRref(F2) = 0.1335, T = 293(2) K.

CCDC no.:: 1513740

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless block
Size:0.53 × 0.30 × 0.24 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.0 cm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
2θmax, completeness:55°, >99%
N(hkl)measured, N(hkl)unique, Rint:15327, 2619, 0.069
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1782
N(param)refined:163
Programs:Bruker programs [26], SHELX [27, 28]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O1−0.32584(19)0.3882(2)0.54491(7)0.0586(4)
O2−0.1784(2)0.18701(19)0.48625(7)0.0599(4)
O30.17088(19)0.70432(18)0.69870(7)0.0553(4)
N10.6623(2)0.55756(18)0.80766(7)0.0375(4)
N20.8445(3)0.4049(3)0.87925(10)0.0646(5)
C1−0.3535(3)0.2516(3)0.49832(11)0.0608(6)
H1A−0.41890.28830.45510.073*
H1B−0.42570.16600.51800.073*
C2−0.0534(3)0.2699(2)0.53079(9)0.0421(5)
C30.1311(3)0.2462(3)0.54163(10)0.0491(5)
H3A0.19000.16540.51770.059*
C40.2275(3)0.3490(2)0.59033(9)0.0418(5)
H4A0.35340.33470.59980.050*
C50.1409(2)0.4718(2)0.62493(8)0.0331(4)
C6−0.0492(2)0.4951(2)0.61174(9)0.0378(4)
H6A−0.10970.57830.63370.045*
C7−0.1411(2)0.3902(2)0.56534(9)0.0395(4)
C80.2424(2)0.5806(2)0.67726(9)0.0347(4)
C90.4340(2)0.5335(2)0.70589(9)0.0387(4)
H9A0.51840.55960.67210.046*
H9B0.43940.41450.71420.046*
C100.4930(3)0.6241(3)0.77239(10)0.0478(5)
H10A0.51020.74100.76240.057*
H10B0.39640.61580.80290.057*
C110.8367(3)0.5899(3)0.79383(11)0.0513(5)
H11A0.87350.66220.76050.062*
C120.9454(3)0.4958(3)0.83824(12)0.0627(6)
H12A1.07270.49350.84040.075*
C130.6752(3)0.4464(3)0.85915(10)0.0497(5)
H13A0.57440.40330.87860.060*

Source of material

A mixture of 1-(2H-1,3-benzodioxol-5-yl)ethanone (3.28 g, 20 mmol), dimethylamine hydrochloride (2.20 g, 27 mmol), paraformaldehyde (0.81 g, 9.0 mmol) in absolute ethanol (15 mL) and a catalytic amount of concentrated hydrochloric acid (0.5 mL) was heated to reflux for two hours. The reaction mixture was cooled and acetone (30 mL) was added. The precipitated Mannich base hydrochloride, namely 1-(2H-1,3-benzodioxol-5-yl)-3-(dimethylamino)propan-1-one hydrochloride was filtered off and dried. The Mannich base hydrochloride (2.58 g, 10 mmol) was dissolved in water (10 mL) and imidazole (1.36 g, 20 mmol) was added. The reaction mixture was heated to reflux for five hours, cooled and the precipitated solid was collected by filtration to give 1.15 g (47%) of the title ketone as a white solid (m.p. 423–425 K). Slow evaporation of an ethanolic solution of the title compound furnished its colourless single crystals.

Experimental details

Carbon-bound hydrogen atoms were placed in calculated positions and were included in the refinement using the riding model approximation, with Uiso(H) set to 1.2Ueq(C).

Discussion

Imidazole derivatives have been first synthesised in the 1840s. Their current importance is testified by their ubiquitousness in the fields of medicinal chemistry, material science and agrochemicals [1]. Imidazole-based compounds exhibit diverse biological activities anticancer [2], [3], [4], [5] antibacterial [6, 7] , antitubercular [8, 9] , antifungal [10, 11] , antiviral [12], [13], [14], anticonvulsant [15], [16], [17] and antiparkinson’s agents [18, 19] . The discovery of the broad spectrum antifungal drug clotrimazole sparked considerable interest in their antifungal properties. Thereafter, research focused on incorporating the imidazole pharmacophore in different chemical structures [20], [21], [22]. In addition, a literature search revealed that a plethora of bioactive molecules incorporate the 1,3-benzodioxole scaffold in their structure [23], [24], [25]. The title ketone is a hybrid structure bearing both the 1,3-benzodioxole and imidazole moieties in its structure and can be used as a precursor to synthesize a number of new bioactive surrogates.

In the crystal structure of the title compound, the asymmetric unit contains one independent molecule. The molecules are packed via several non-classical C—H ⋯O intermolecular hydrogen bonds to give a 3-D network.

Acknowledgement

This research project was supported by a grant from the Research Center of the Female Scientific and Medical Colleges, Deanship of Scientific Research, King Saud University.

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Received: 2016-11-2
Accepted: 2017-3-5
Published Online: 2017-3-23
Published in Print: 2017-5-24

©2017 Reem I. Al-Wabli et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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  1. Cover and Frontmatter
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  13. Crystal structure of 1-(diethoxy phosphonomethyl) 2-benzoyl-3-chloro-2-cyclohexen-1-ol, C18H24ClO5P
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  54. Crystal structure of methyl 2-acetamido-5-chlorbenzoate, C10H10ClNO3
  55. Crystal structure of tetrakis(μ2-3,3-dimethylacrylato-κ2O,O′)-bis(2-aminopyrimidine-κN) dicopper(II), C28H38Cu2N6O8
  56. Crystal structure of 3-amino-8-methoxy-1-phenyl-1H-benzo[f]chromene-2-carbonitrile, C21H16N2O2
  57. Crystal structure of 4-(2-ammonioethyl)morpholin-4-ium dichloride monohydrate, C6H18Cl2N2O2
  58. Crystal structure of 1-(3-((5-bromo-2-hydroxybenzylidene)amino)phenyl)ethanone O-benzyl oxime, C22H19BrN2O2
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  60. Crystal structure of 4-bromo-2-(1H-pyrazol-3-yl)phenol, C9H7BrN2O
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