Home The crystal structure of (1-(pyridin-2-yl)-N-(pyridin-2-ylmethyl)-N-((1-(4-vinylbenzyl)-1H-benzo[d]imidazol-2-yl)methyl)methanamine-κ 4 N,N′,N″,N‴)tris(nitrato-kO,O′)-erbium(III), C29H27ErN8O9
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The crystal structure of (1-(pyridin-2-yl)-N-(pyridin-2-ylmethyl)-N-((1-(4-vinylbenzyl)-1H-benzo[d]imidazol-2-yl)methyl)methanamine-κ 4 N,N′,N″,N‴)tris(nitrato-kO,O′)-erbium(III), C29H27ErN8O9

  • Hai-Ping Wang ORCID logo EMAIL logo , Lu Chen , Jia-Jun Liang and Guo-Peng Huang
Published/Copyright: June 9, 2023
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Zeitschrift für Kristallographie - New Crystal Structures
From the journal Zeitschrift für Kristallographie - New Crystal Structures Volume 238 Issue 4

Abstract

C29H27ErN8O9, triclinic, P 1 ‾ (no. 2), a = 8.6681(2) Å, b = 13.0695(3) Å, c = 14.1408(4) Å, α = 80.130(2)°, β = 86.409(2)°, γ = 75.761(2)°, V = 1529.43(4) Å3, Z = 2, R gt (F) = 0.0382, wR ref (F 2) = 0.1110, T = 295 K.

CCDC no.: 2244906

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.10 × 0.02 × 0.02 mm
Wavelength: Cu Kα radiation (1.54184 Å)
μ: 5.68 mm−1
Diffractometer, scan mode: XtaLAB Synergy, ω
θ max, completeness: 77.5°, >99 %
N(hkl)measured, N(hkl)unique, R int: 18,450, 6022, 0.046
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 5507
N(param)refined: 434
Programs: CrysAlisPro [1], SHELX[2, 3], Olex2 [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
C1 0.8448 (12) 0.9216 (8) 0.4740 (7) 0.111 (3)
H1A 0.871467 0.858660 0.447951 0.133*
H1B 0.838069 0.987073 0.434329 0.133*
C2 0.8181(11) 0.9182(7) 0.5618(6) 0.098(2)
H2 0.791987 0.983426 0.584006 0.118*
C3 0.8237(7) 0.8192(5) 0.6365(5) 0.0676(14)
C4 0.7835(8) 0.8314(5) 0.7307(5) 0.0686(14)
H4 0.758163 0.899767 0.746692 0.082*
C5 0.7798(7) 0.7462(4) 0.8012(4) 0.0586(12)
H5 0.751604 0.758048 0.863664 0.070*
C6 0.8173(5) 0.6420(4) 0.7816(4) 0.0514(11)
C7 0.8591(6) 0.6283(5) 0.6876(5) 0.0660(14)
H7 0.885650 0.559776 0.671837 0.079*
C8 0.8618(7) 0.7161(6) 0.6161(5) 0.0731(16)
H8 0.889776 0.704945 0.553439 0.088*
C9 0.8088(5) 0.5489(4) 0.8594(4) 0.0548(11)
H9A 0.902878 0.491364 0.855164 0.066*
H9B 0.807187 0.570796 0.921672 0.066*
C10 0.5111(5) 0.5628(4) 0.8729(3) 0.0445(9)
C11 0.4553(6) 0.6526(4) 0.9170(4) 0.0601(13)
H11 0.523979 0.687776 0.938614 0.072*
C12 0.2927(7) 0.6864(5) 0.9270(4) 0.0651(14)
H12 0.249837 0.745907 0.956301 0.078*
C13 0.1906(6) 0.6334(5) 0.8940(4) 0.0615(13)
H13 0.081308 0.658600 0.901859 0.074*
C14 0.2471(5) 0.5447(4) 0.8501(4) 0.0529(11)
H14 0.177931 0.510798 0.827181 0.064*
C15 0.4116(5) 0.5075(3) 0.8414(3) 0.0433(9)
C16 0.6531(5) 0.4264(3) 0.8093(3) 0.0432(9)
C17 0.7905(5) 0.3445(4) 0.7797(4) 0.0521(11)
H17A 0.874875 0.378307 0.752744 0.063*
H17B 0.831511 0.292278 0.835243 0.063*
C18 0.8522(5) 0.1857(4) 0.7084(4) 0.0503(10)
H18A 0.960601 0.194068 0.705514 0.060*
H18B 0.836030 0.156240 0.652386 0.060*
C19 0.8279(5) 0.1105(4) 0.7974(4) 0.0467(10)
C20 0.9483(6) 0.0245(4) 0.8352(4) 0.0596(12)
H20 1.049196 0.013443 0.806395 0.071*
C21 0.9184(7) −0.0440(5) 0.9149(5) 0.0737(16)
H21 0.997039 −0.103486 0.939281 0.088*
C22 0.7707(7) −0.0235(5) 0.9581(5) 0.0714(15)
H22 0.748110 −0.068006 1.013209 0.086*
C23 0.6569(6) 0.0634(5) 0.9190(4) 0.0618(13)
H23 0.557894 0.077365 0.949925 0.074*
C24 0.7384(6) 0.3586(4) 0.6123(4) 0.0566(12)
H24A 0.845511 0.365766 0.594222 0.068*
H24B 0.671845 0.429461 0.615654 0.068*
C25 0.6763(6) 0.3113(4) 0.5375(4) 0.0513(11)
C26 0.7283(7) 0.3251(5) 0.4423(4) 0.0703(15)
H26 0.800502 0.366953 0.422083 0.084*
C27 0.6702(9) 0.2754(6) 0.3781(4) 0.0832(19)
H27 0.705301 0.281974 0.314314 0.100*
C28 0.5617(8) 0.2168(6) 0.4090(4) 0.0768(17)
H28 0.520926 0.183219 0.366843 0.092*
C29 0.5136(7) 0.2084(5) 0.5037(4) 0.0625(13)
H29 0.439044 0.168476 0.524244 0.075*
Er1 0.45474(2) 0.26069(2) 0.74200(2) 0.03808(10)
N1 0.5048(4) 0.4195(3) 0.8026(3) 0.0428(8)
N2 0.7401(4) 0.2908(3) 0.7078(3) 0.0432(8)
N3 0.5678(5) 0.2543(3) 0.5686(3) 0.0506(9)
N4 0.6801(4) 0.1306(3) 0.8376(3) 0.0477(8)
N5 0.2249(5) 0.2949(3) 0.8996(3) 0.0493(9)
N6 0.3993(5) 0.0486(3) 0.7520(3) 0.0575(10)
N7 0.2249(5) 0.3825(4) 0.6079(3) 0.0569(10)
N8 0.6654(4) 0.5097(3) 0.8507(3) 0.0474(8)
O2 0.3686(4) 0.2524(3) 0.9182(2) 0.0546(8)
O3 0.1207(5) 0.3028(4) 0.9615(3) 0.0841(13)
O4 0.1940(4) 0.3290(3) 0.8128(2) 0.0500(7)
O5 0.3259(5) 0.1152(3) 0.8041(3) 0.0618(9)
O6 0.3717(7) −0.0382(4) 0.7568(4) 0.0972(17)
O7 0.5021(4) 0.0800(3) 0.6948(3) 0.0599(9)
O8 0.2364(4) 0.2837(3) 0.6340(2) 0.0522(7)
O9a 0.143(6) 0.438(2) 0.540(3) 0.069(7)
O9Ab 0.105(3) 0.4373(18) 0.566(3) 0.078(4)
O10 0.3288(4) 0.4208(3) 0.6400(3) 0.0587(8)

  1. aOccupancy: 0.40(12), bOccupancy: 0.60(12).

1 Source of materials

All chemicals were purchased from commercial sources and used as received. Diethyl 1-(pyridin-2-yl)-N-(pyridin-2-ylmethyl)-N-((1-(4-vinylbenzyl)-1H-benzo[d]imidazol-2-yl)methyl)methanamine was prepared according to previous reports [5, 6]. A solution of above (0.01 mmol) in acetonitrile (5 mL) was added to a stirred solution of Er(NO3)3·6H2O (0.01 mmol) in acetonitrile (5 mL) at room temperature for 1 h. After filtration, slow diffusion of diethyl ether into the filtrate over 72 h afforded block crystals.

2 Experimental details

All hydrogen atoms were refined isotropic on calculated positions using a riding model with their U iso values constrained to 1.5 times the U eq of their pivot atoms.

3 Comment

A lot of tripodal ligands-sensitized lanthanide complexes, which combine the outstanding optical properties of the lanthanide cations and the characteristics of strong light absorption yield and multidentate chelate ligands, have been studied in light-conversion molecular devices and organic light-emitting devices [7], [8], [9]. The application of these excellent molecular-based materials has been relatively limited, however, because of the poor machining performance of luminescent lanthanide complexes. Constructed a styrene unit on the skeleton of tripodal ligands, a lanthanide complexes was designed and synthesized and could be copolymerized with other monomers to prepare a metallopolymer.

Er(III) is surrounded in a 10-coordinating environment. One apical N, two pyridine N, one benzimidazole N, and six nitrate O atoms participate in coordination with the Er3+ center. The two pyridine and one benzimidazole rings are linked by the apical N show a fan-like configuration. The Er–O bond lengths range are 2.386(4)–2.516(4) Å, while the Er–N bond lengths are 2.539(4)–2.905(4) Å. The N–Er–O bond angles range are 66.09(14)°–174.19(13)°, the N–Er–N bond angles range are 62.66(13)°–110.42(14)° and O–Er–O bond angles range are 50.60(13)°–124.23(15)°. These values were close to those reported for related compounds [10, 11]. All C–C and C–N bond lengths and angles are in the expected range.

Corresponding author: Hai-Ping Wang, School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, Guangdong 529020, P.R. China, E-mail:

Funding source: NSFC of China

Award Identifier / Grant number: 21703291

Funding source: NSF of Guangdong Province

Award Identifier / Grant number: 2017A030310258

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was funded by NSFC of China (21703291) and the NSF of Guangdong Province (2017A030310258).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2023-04-05
Accepted: 2023-05-25
Published Online: 2023-06-09
Published in Print: 2023-08-28

© 2023 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  63. Synthesis and crystal structure of 2-(2-oxo-2-(o-tolyl)ethyl)-4H-chromen-4-one, C18H14O3
  64. Crystal structure of 2-(thiazol-2-yl)hexahydro-1H-4,7-epoxyisoindole-1,3(2H)-dione, C11H10N2O3S
  65. Crystal structure of N-(diaminomethylene)-1-(dimethylamino)-1-iminiomethanaminium dichloride, C4H13Cl2N5
  66. Crystal structure of poly[(μ3-3, 5-dichloro-2-hydroxy-benzoato-κ4 Cl,O:O′:O″) silver(I)], C7H3AgCl2O3
  67. The crystal structure of tetrakis(1-isopropylimidazole-κ1 N)-[μ2- imidazole-4,5-dicarboxylato-κ4 O,N,O′,N′)]- trioxido-divanadium, C29H41N10O7V2
  68. Crystal structure of catena-[(μ3-bromido)-(1H-1,2,4-triazol-1-yl)benzoato-κ1 N)copper(I)], C9H7BrCuN3O2
  69. The crystal structure of (E)-4-fluoro-N′-(1-(2-hydroxyphenyl)propylidene)benzohydrazide, C16H15FN2O2
https://doi.org/10.1515/ncrs-2023-0165
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Articles in the same Issue

  1. Frontmatter
  2. New Crystal Structures
  3. Crystal structure of a polymorph of potassium picrate, C6H2KN3O7
  4. The crystal structure of (1E,2E)-1,2-bis(quinolin-2-ylmethylene)hydrazine, C20H14N4
  5. 5-Amino-2-chloro-4-fluoro-N-(N-isopropyl-N-methylsulfamoyl) benzamide, C11H15O3ClFN3S
  6. Crystal structure of trans-N 1,N 8-bis(2-cyanoethyl)-5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane, C22H42N6
  7. The crystal structure of [N-{[2-(oxy)-4-methoxyphenyl](phenyl)methylidene}alaninato]-diphenyl-silicon(IV) – chloroform (1/1), C29H25NO4Si·CHCl3
  8. Crystal structure of tetracarbonyl-{μ-[N-(diphenylphosphanyl)-N,P,P-triphenylphosphinous amide]}-bis[μ-(phenylmethanethiolato)]diiron (Fe–Fe), C48H39Fe2NO4P2S2
  9. Crystal structure of baryte from Mine du Pradet (France)
  10. The crystal structure of [(2,2′-bipyridine-6-carboxylato-κ3 N,N,O)-(6-phenylpyridine-2-carboxylate-κ2 N,O)copper(II)] monohydrate, C23H17N3O5Cu
  11. Crystal structure of bis(μ-benzeneselenolato)-(μ-[N-benzyl-N-(diphenylphosphanyl)-P,P-diphenylphosphinous amide])-tetracarbonyl diiron (Fe–Fe), C47H37Fe2NO4P2Se2
  12. The crystal structure of diaqua-methanol-κ1 O- (3-thiophenecarboxylato-κO)-(2,2′-dipyridyl-κ2 N,N′)manganese(II) 3-thiophenecarboxylate, C21H22N2O7S2Mn
  13. Crystal structure of catena-poly[tetrakis(butyl)-μ2-2-((oxido(phenyl)methylene)hydrazineylidene)propanoato-κ4 O:O,O′,N-μ2-2-((oxido(phenyl)methylene)hydrazineylidene)propanoato-κ4 O,N,O′:N′-ditin(IV)], C34H50N6O6Sn2
  14. Crystal structure of 4-chloro-N′-[(1E)-(2-nitrophenyl)methylidene]benzohydrazide, C14H10ClN3O3
  15. The crystal structure of 3-(1′-deoxy-3′,5′-O-dibenzy-β-d-ribosyl)adenine dichloromethane solvate, C49H52Cl2N10O6
  16. The crystal structure of (Z)-4-amino-N′-(1-(o-tolyl)ethylidene)benzohydrazide, C16H17N3O
  17. The co-crystal structure of etoricoxib–phthalic acid (1/1), C18H15ClN2O2S·C8H6O4
  18. Crystal structure of (glycinto-κ 2 O,N ′)-[5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ 4 N,N ′,N ″,N ‴]nickel(II) perchlorate monohydrate C18H42ClN5NiO7
  19. The crystal structure of catena-poly[bis(1-ethylimidazole-k1 N)-(μ 2-benzene-1-carboxyl-3,5-dicarboxylato-κ 2 O, O′)zinc(II)], C19H20N4O6Zn
  20. Crystal structure of 3-(thiazol-2-ylcarbamoyl)-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid, C11H12N2O4S
  21. Rietveld structure analysis of keatite, a rare, metastable SiO2 polymorph
  22. Crystal structure of catena-poly[(μ2-isophthalato-k3 O,O′:O″)(4-(4-pyridyl)-2,5-dipyrazylpyridine-k3 N,N′,N″)cobalt(II)] trihydrate C26H22N6O7Co1
  23. Crystal structure of 3,5–di-O-benzoyl-1,2-O-isopropylidene-α–D-ribose, C22H22O7
  24. The crystal structure of fac-tricarbonyl(6-bromo-2,2-bipyridine-κ2 N,N)-(nitrato-κO)rhenium(I), C13H7BrN3O6Re
  25. The crystal structure of (E)-N′-(4-hydroxy-3-methoxybenzylidene)-2-naphthohydrazide monohydrate, C19H18N2O4
  26. The crystal structure of 5,5′-diselanediyl-bis(2-hydroxybenzaldehyde), C14H10O4Se2
  27. The crystal structure of catena-poly[diaqua-m2-dicyanido-κ2 C:N-dicyanido-κ1 C-bis(4-(pyridin-4-yl)benzaldehyde-κ1N)iron(II)-platinum(II), C28H22N6O4PtFe
  28. Redetermination of the crystal structure of 5,14-dihydro-6,17-dimethyl-8,15-diphenyldibenzo(b,i)(1,4,8,11)tetra-azacyclotetradecine, C32H28N4
  29. Crystal structure of poly[(μ3-2-(3,5-dicarboxyphenyl) benzimidazole-6-carboxylato-κ4O:O:O′:O″)lead(II)] monohydrate, C16H10N2O7Pb
  30. The crystal structure of fac-tricarbonyl(2-pyridin-2-yl-quinoline-κ2 N,N′)-(pyrazole-κN)rhenium(I)nitrate, C20H14N4O3ReNO3
  31. Crystal structure of dibromo-dicarbonyl-bis(tricyclohexylphosphine)-osmium(II) dichloromethane solvate, C38H66Br2O2OsP2
  32. Crystal structure of poly[bis(μ 2-2,6-bis(1-imidazoly)pyridine-κ 2 N:N′)copper(II)] diperchlorate dihydrate, C22H22Cl2CuN10O10
  33. The crystal structure of fac-tricarbonyl(N-benzoyl-N,N-cyclohexylmethylcarbamimidothioato-κ2 S,O)-(pyridine-κN)rhenium(I), C23H24N3O4ReS
  34. Crystal structure of (E)-7-fluoro-2-(4-fluorobenzylidene)-3,4-dihydronaphthalen-1(2H)-one, C17H12F2O
  35. Synthesis and crystal structure of 1-((3R,10S,13S, 17S)-3-((2-methoxyphenyl)amino)-10,13-dimethylhexadecahydro-1H-cyclopenta[α]phenanthren-17-yl)ethan-1-one, C28H41NO2
  36. The crystal structure of fac-tricarbonyl((pyridin-2-yl)methanamino-κ2 N,N′)-((pyridin-2-yl)methanamino-κN)rhenium(I) nitrate, C15H16O3N4Re
  37. The crystal structure of (1-(pyridin-2-yl)-N-(pyridin-2-ylmethyl)-N-((1-(4-vinylbenzyl)-1H-benzo[d]imidazol-2-yl)methyl)methanamine-κ 4 N,N′,N″,N‴)tris(nitrato-kO,O′)-erbium(III), C29H27ErN8O9
  38. Crystal structure of tetracene-5,12-dione, C18H10O2
  39. Crystal structure of (3R,3aS,6R,6aR)-6-hexyl-3-methyltetrahydrofuro[3,4-b]furan-2,4-dione, C13H20O4
  40. The crystal structure of N′1,N′3-bis((E)-thiophen-2-ylmethylene)isophthalohydrazide monohydrate, C18H16N4O3S2
  41. Crystal structure of methyl ((4-aminobenzyl)sulfonyl)-L-prolinate, C13H18N2O4S
  42. Crystal structure of (E)-3-(3-methoxybenzylidene)benzofuran-2(3H)-one, C16H12O3
  43. Synthesis and crystal structure (E)-1-(4-bromo-2-hydroxyphenyl)-3-(dimethylamino)prop-2-en-1-one, C11H12BrNO2
  44. Synthesis and crystal structure of (S,E)-4-hydroxy-3-(2-((4aR,6aS,7R,10aS,10bR)-3,3,6a,10b-tetramethyl-8-methylenedecahydro-1H-naphtho[2,1-d][1,3]dioxin-7-yl)ethylidene)dihydrofuran-2(3H)-one, C23H34O5
  45. The crystal structure of N,N′-(1,2-phenylene)bis (2-((2-oxopropyl)selanyl)benzamide), C26H24N2O4Se2
  46. The crystal structure of 1-ethyl-2-nitro-imidazole oxide, C5H7N3O3
  47. The crystal structure of 2-(2-fluorophenyl)naphtho[2,1-d]thiazole, C17H10FNS
  48. Crystal structure of (E)-2,4-di-tert-butyl-6-(((2-fluorophenyl)imino) methyl)phenol, C21H26FNO
  49. Synthesis and crystal structure of 3-methyl-2-(methylthio)-4H-chromen-4-one, C12H12O2S
  50. Crystal structure of dithieno[2,3-d:2′,3′-d′]benzo[1,2-b:4,5-b′]dithiophene-5,10-dione, C14H4O2S4
  51. The crystal structure of dimethyl 2,2ʹ-((adamantane-1,3-diylbis(4,1-phenylene)) bis(oxy))diacetate, C28H32O6
  52. The crystal structure of N-(6-chloro-2-methyl-2H-indazol-5-yl)acetamide, C10H10ClN3O
  53. Crystal structure of triaqua-(5-bromoisophthalato-κ1 O)-(2,2′-bipyridine-κ2 N:N′)nickel(II) hydrate, C18H19BrN2NiO8
  54. The crystal structure of 2-amino-4-carboxypyridin-1-ium perchlorate, C6H7ClN2O6
  55. The crystal structure of catena-poly[5-aminonicotinic acid-k1 N-m2-bromido-copper(I)], Cu(C6N2H6O2)Br
  56. The crystal structure of 2,2-bis(3-methoxyphenyl)-1-tosyl-1,2-dihydro- 2λ4,3λ4  -[1,3,2]diazaborolo[4,5,1-ij]quinoline - dichloromethane (1/1)
  57. The crystal structure of catena-poly[bis(6-phenylpyridine-2-carboxylato-κ2 N,O)-(μ2-4,4′-bipyridne-κ2 N:N)cadmium(II)], C34H24N4O4Cd
  58. The crystal structure of 5,7-dinitropyrazolo[5,1-b]quinazolin-9(4H)-one, C10H5N5O5
  59. Crystal structure of rac-1,8-bis(2-carbamoylethyl)-5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane, C22H46N6O2
  60. The crystal structure of (E)-N ′-(2-bromobenzylidene)-2-naphthohydrazide, C36H26Br2N4O2
  61. The crystal structure of 5-nitronaphthoquinone, C10H5NO4
  62. The crystal structure of (S, R p )-4–benzhydrylideneamino-12-(4-tert-butyl oxazolin-2-yl)[2.2]paracyclophane, C36H36N2O
  63. Synthesis and crystal structure of 2-(2-oxo-2-(o-tolyl)ethyl)-4H-chromen-4-one, C18H14O3
  64. Crystal structure of 2-(thiazol-2-yl)hexahydro-1H-4,7-epoxyisoindole-1,3(2H)-dione, C11H10N2O3S
  65. Crystal structure of N-(diaminomethylene)-1-(dimethylamino)-1-iminiomethanaminium dichloride, C4H13Cl2N5
  66. Crystal structure of poly[(μ3-3, 5-dichloro-2-hydroxy-benzoato-κ4 Cl,O:O′:O″) silver(I)], C7H3AgCl2O3
  67. The crystal structure of tetrakis(1-isopropylimidazole-κ1 N)-[μ2- imidazole-4,5-dicarboxylato-κ4 O,N,O′,N′)]- trioxido-divanadium, C29H41N10O7V2
  68. Crystal structure of catena-[(μ3-bromido)-(1H-1,2,4-triazol-1-yl)benzoato-κ1 N)copper(I)], C9H7BrCuN3O2
  69. The crystal structure of (E)-4-fluoro-N′-(1-(2-hydroxyphenyl)propylidene)benzohydrazide, C16H15FN2O2
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