Home The crystal structure of tris(nitrato-κ2O,O′)-bis(4,4,5,5-tetramethyl-2-(o-pyridyl)imidazoline-1-oxyl 3-oxide-κ2N,O)yttrium(III), C24H32N9O13Y
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The crystal structure of tris(nitrato-κ2O,O′)-bis(4,4,5,5-tetramethyl-2-(o-pyridyl)imidazoline-1-oxyl 3-oxide-κ2N,O)yttrium(III), C24H32N9O13Y

  • Dongjiao Li ORCID logo EMAIL logo
Published/Copyright: April 29, 2020

Abstract

C24H32N9O13Y, monoclinic, P21/n (no. 14), a = 12.237(3) Å, b = 11.058(3) Å, c = 23.235(6) Å, β = 98.486(4)°, V = 3109.6(14) Å3, Z = 4, Rgt(F) = 0.0455, wRref(F2) = 0.0903, T = 293 K.

CCDC no.: 1974362

The molecular complex title structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.24 × 0.20 × 0.18 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.96 mm−1
Diffractometer, scan mode:Bruker SMART APEXII, φ and ω
θmax, completeness:26.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:17527, 6348, 0.064
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4137
N(param)refined:432
Programs:Bruker [1], [2], Olex2 [3], SHELX [4], [5]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Y10.82047(2)0.83811(3)0.89592(2)0.02576(10)
O11.00813(17)0.81739(19)0.93399(9)0.0289(5)
O21.24785(19)0.7124(2)0.80777(10)0.0438(6)
O30.67111(17)0.92402(19)0.83854(9)0.0300(5)
O40.5949(2)1.3237(2)0.87100(13)0.0624(8)
O50.88601(18)0.6457(2)0.86379(10)0.0395(6)
O60.76400(19)0.7293(2)0.80065(10)0.0415(6)
O70.8365(2)0.5590(2)0.78054(12)0.0595(8)
O80.8021(2)0.6946(2)0.97350(11)0.0465(7)
O90.6685(2)0.7010(2)0.90245(12)0.0477(7)
O100.6551(3)0.5869(3)0.97636(17)0.1057(14)
O110.88104(17)0.9286(2)0.99191(10)0.0373(6)
O120.70628(18)0.9328(2)0.96414(10)0.0366(6)
O130.7718(2)0.9776(2)1.05412(11)0.0504(7)
N11.0859(2)0.7643(2)0.91177(11)0.0239(6)
N21.2015(2)0.7154(2)0.85278(11)0.0284(6)
N30.9507(2)0.8864(2)0.81494(11)0.0282(6)
N40.6201(2)1.0226(2)0.84938(11)0.0268(6)
N50.5823(2)1.2113(3)0.86330(13)0.0371(7)
N60.8517(2)1.0733(2)0.88504(11)0.0274(6)
N70.8287(2)0.6425(3)0.81389(13)0.0370(7)
N80.7067(3)0.6584(3)0.95152(16)0.0533(9)
N90.7863(2)0.9477(3)1.00508(13)0.0346(7)
C10.9014(3)0.9596(3)0.77310(14)0.0358(9)
H10.8248450.9660130.7685510.043*
C20.9564(3)1.0258(3)0.73649(15)0.0443(10)
H20.9180901.0759850.7083330.053*
C31.0694(3)1.0162(4)0.74243(17)0.0503(11)
H31.1099101.0629170.7198210.060*
C41.1211(3)0.9359(3)0.78257(15)0.0413(9)
H41.1970780.9242440.7858510.050*
C51.0611(3)0.8733(3)0.81764(13)0.0263(8)
C61.1138(2)0.7860(3)0.86045(13)0.0235(7)
C71.2266(3)0.6241(3)0.90099(14)0.0285(8)
C81.3512(3)0.6177(4)0.91896(17)0.0473(10)
H8A1.3851250.5884950.8869330.071*
H8B1.3679140.5636650.9514160.071*
H8C1.3791120.6968230.9298770.071*
C91.1830(3)0.5035(3)0.87523(17)0.0552(11)
H9A1.1049590.5097850.8623360.083*
H9B1.1966370.4414970.9043270.083*
H9C1.2198790.4832900.8428070.083*
C101.1603(2)0.6754(3)0.94744(13)0.0276(7)
C111.2292(3)0.7486(4)0.99487(16)0.0525(11)
H11A1.2748570.8043490.9775520.079*
H11B1.2749870.6950711.0205450.079*
H11C1.1811370.7925431.0165030.079*
C121.0891(3)0.5863(3)0.97409(17)0.0505(11)
H12A1.0499680.6275611.0011660.076*
H12B1.1348300.5243880.9940760.076*
H12C1.0370470.5503270.9439840.076*
C130.9575(3)1.1046(3)0.89631(15)0.0339(8)
H131.0075341.0480960.9143270.041*
C140.9974(3)1.2158(4)0.88289(18)0.0495(11)
H141.0722131.2334960.8919940.059*
C150.9257(3)1.2994(4)0.85612(18)0.0514(11)
H150.9512041.3738240.8450500.062*
C160.8146(3)1.2717(3)0.84567(15)0.0395(9)
H160.7634631.3278780.8283290.047*
C170.7812(3)1.1595(3)0.86145(13)0.0285(7)
C180.6635(3)1.1309(3)0.85670(14)0.0283(8)
C190.4799(3)1.1471(3)0.87374(15)0.0383(9)
C200.3777(3)1.2181(4)0.8472(2)0.0634(13)
H20A0.3790701.2968590.8646350.095*
H20B0.3124001.1758020.8542640.095*
H20C0.3772441.2261170.8060300.095*
C210.4857(3)1.1424(4)0.93970(16)0.0518(11)
H21A0.5501021.0978250.9562350.078*
H21B0.4208111.1032160.9493710.078*
H21C0.4898951.2231360.9550280.078*
C220.4960(2)1.0236(3)0.84513(15)0.0325(8)
C230.4514(3)1.0174(4)0.78074(16)0.0536(11)
H23A0.4747491.0876580.7615470.080*
H23B0.3720971.0146950.7756460.080*
H23C0.4789470.9460540.7642680.080*
C240.4590(3)0.9157(3)0.87735(17)0.0483(10)
H24A0.4737100.8427610.8574460.072*
H24B0.3812410.9218040.8788460.072*
H24C0.4986740.9141540.9162090.072*

Source of material

The ligand 2-(2′-pyridyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (NIT2Py) was prepared following a slightly modified literature known procedure [6], [7]. Y(NO3)3⋅6 H2O (0.046 g, 0.2 mmol) and NIT2Py (0.047 g, 0.2 mmol) were dissolved in 10 mL anhydrous THF. The mixture was stirred at room temperature for four hours and then filtered. The dark brown filtrate was allowed to stand in the dark for two week. Dark yellow crystals were obtained. Elemental analysis calcd. (%) for C24H32N9O13 Y: C, 38.77; H, 4.34; N, 16.96. Found (%): C, 38.70; H, 4.31; N, 16.90.

Experimental details

The hydrogen atoms were generated geometrically using the riding model. The Uiso values of the hydrogen atoms of methyl groups were set to 1.5Ueq(C) and the Uiso values of all other hydrogen atoms were set to 1.2Ueq(C, N).

Comment

In the complex [Y(III)(NIT2Py)2(NO3)3], the metal ion is tenfold coordinated by two NIT2Py and three nitrate anions. The title structure is isomorphous to the structures of the directly related Eu(III) and Sm(III) complexes, respectively [8], [9]. The NIT2Py behaves as a bidentate chelating ligand via one oxygen of a nitronyl nitroxide and one nitrogen of a pyridyl group, however, the other oxygen of the nitronyl nitroxide keeps uncoordinated. The coordination sphere of the Y atom is completed by a κ2-coordination of three nitrate anions. The N(1)-O(1) and N(4)-O(3) (coordinated to Y(III) ion) bond lengths (1.289(3) Å and 1.299(3) Å) are longer than N(2)-O(2) and N(5)-O(4) to Y(III) ion) bond lengths (1.262(3) Å and 1.262(3) Å). The O(1)N(1)C(6)N(2)O(2) moiety is almost planar; minimum and maximum deviation of the atoms from this plane are 0.0132 Å for N(1) and 0.0016 Å for O(2), exhibiting the delocalization of π electrons. Dihedral angles between the pyridyl substituents and the nitronyl nitroxide moieties are 36.1° and 34.3° for two NIT2Py in the compound, respectively. The Y-N(pyridyl) bond lengths are 2.646(3) Å and 2.692(3) Å. The Y-O(NO3) bond lengths can be sorted out into two groups: (a) those with Y-O bond lengths (Y-O(5), Y-O(8), Y-O(9) and Y-O(11)) ranging from 2.421(2) Å to 2.457(2) Å and (b) those with bond lengths of 2.493(2) Å (Y-O(12)) and 2.525(2) Å (Y-O(6)). The bond lengths in the second group are longer, obviously. The nitronyl nitroxide groups are well spaced apart with the nearest O(2)–O(2), O(4)–O(4), and O(2)–O(4) extents being 6.148, 7.790, and 5.585 Å, respectively.

The Fourier Transform Infrared (FT-IR) spectrum of the title compound shows two characteristic strong bands in the 1500–1300 cm−1 region, which can be ascribed to the υas(NO3) (1450 cm−1) and υs(NO3) (1300 cm−1) vibrations of the coordinated nitrate groups. These two bands are divided 150 cm−1, attributing to a bidentate coordination mode. Furthermore, the frequency of N—O stretch is 1360 cm−1 for free NIT2Py, and the frequency of N—O stretch is 1320 cm−1 for the compound. The red shift demonstrates the coordinated N—O group. The electronic spectrum of the compound in THF exhibits a strong, broad absorption centered around 606 nm ascribed to a n → π* transition [10], [11], and a peak around 367 nm can be ascribed to π → π* of the ONCNO group of the NIT2Py. The absorption around 260 nm can be ascribed to the π → π* transition of the 2-pyridyl group.

Acknowledgements

We acknowledge support from the National Natural Science Foundation of China (21505064).

References

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Received: 2020-03-04
Accepted: 2020-04-08
Published Online: 2020-04-29
Published in Print: 2020-06-25

©2020 Dongjiao Li, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  55. The crystal structure of 8-((4-chlorophenylamino)methylene)-6,10-dioxaspiro[4.5]decane-7,9-dione, C15H14ClNO4
  56. The crystal structure of catena-poly[oktaaqua-bis(μ2-4,4′-ethene-1,2-diyldipyridine-κ2N:N′)-(μ2-3,3′-(1-oxidodiazene-1,2-diyl)diphthalato-κ2O:O′)dicobalt(II)] dihydrate, C28H36N4O19Co2
  57. Crystal structure of (E)-1-(2-cyano-3-oxo-1-phenylprop-1-en-1-yl)-3,7-diphenylindolizine-6-carbonitrile, C31H19N3O
  58. Crystal structure of 1,1′-bis(diphenylphosphino)ferrocene-(1,1′-bis(diphenylphosphino)ferrocene-κ2P,P′)-(O-isobutyl sulfurodithioito-κ2S,S′)copper(I), C39H37CuFeOP2S2
  59. Crystal structure of poly[(5-bimethylamino-1-naphthalenesulfonato-κO)-(μ3-hexamethylenetetramino-κ3N:N′:N′′)silver(I)] dihydrate, C36H52Ag2N10O8S2
  60. Crystal structure of poly[μ2-diaqua-(μ2-2-amino-4,5-dicyano-κ2N:N′-imidazol-1-ide)sodium(I)], C5H6N5O2Na
  61. Crystal structure of (1,3-propanediamine-κ2N,N′)(N-(3-aminopropyl)-α-methyl aspartato-κ4N,N′,O,O′)cobalt(III) chloride, C11H24ClCoN4O4
  62. Crystal structure and anti-inflammatory activity of (3E,5E)-3,5-bis(4-fluorobenzylidene)-1-((4-fluorophenyl)sulfonyl)piperidin-4-one-dichloromethane (1/1), C26H20Cl2F3NO3S
  63. Crystal structure of (S)-(+)-1-cyclohexylethylaminium chloride, C8H18NCl
  64. The crystal structure of tris(nitrato-κ2O,O′)-bis(4,4,5,5-tetramethyl-2-(o-pyridyl)imidazoline-1-oxyl 3-oxide-κ2N,O)yttrium(III), C24H32N9O13Y
  65. Hydrogen bonding versus packing effects in the crystal structure of 3-((1R,2S)-1-methylpyrrolidin-1-ium-2-yl)pyridin-1-ium tetraiodidozincate(II), C10H16I4ZnN2
  66. Dimerization of 2-[(2-((2-aminophenyl)thio)phenyl)amino]-cyclohepta-2,4,6-trien-1-one through hydrogen bonding, C19H16N2OS
  67. Crystal structure of 1-(4-chloro-phenyl)-7-ethoxyl-6,8-difluoro-4-oxo-1,4-dihydro-quinoline-3-carboxylic acid, C18H12ClF2NO4
  68. Crystal structure of 7-ethoxy-6,8-difluoro-4-oxo-1-pyridin-2-ylmethyl-1,4-dihydro-quinoline-3-carboxylic acid, C18H14F2N2O4
  69. Crystal structure of octahydro-7aR,8′R-dimethylspiro[isobenzofuran-4(1H), 4′ (3′H)-[1H-7,9a]methanocyclohepta[c]pyran]-1′,3, 9′ (3aH,4′aH)-trione, C20H26O5
  70. Crystal structure of bis(5-ethoxy-2-(((1-hydroxy-2-methyl-3-oxidopropan-2-yl)imino)methyl)phenolato-κ3N,O,O’)manganese(IV) – methanol (1/1), C27H38MnN2O9
  71. Crystal structure of 8a,8a′′-oxybis(8aH-8,9-dioxa-3a1λ4-aza-8aλ4-borabenzo[fg]tetracene), C34H22B2N2O5
  72. Crystal structure of bromido-triphenyl-(triphenylarsine oxide-κO)tin(IV), C36H30AsBrOSn
  73. Crystal structure of catena-poly[chlorido-(μ2-formato-κ2O:O′)-(1,10-phenathroline-κ2N,N′)copper(II)], C26H18Cl2Cu2N4O4
  74. The crystal structure of poly[(μ10-5-carboxyisophthalato-κ10O)disodium], C9H4Na2O6
  75. The crystal structure of 3,5-difluoroisonicotinic acid, C6H3F2NO2
  76. The crystal structure of ethyl-1-(N-(adamantan-1-yl)-carbamothioyl)piperidine-4-carboxylate, C19H30N2O2S
  77. Crystal structure of 5-methyl-3-phenyl-1-tosyl-1,2,3,4-tetrahydropyridine, C19H21NO2S
  78. Crystal structure of bis((3-chlorosalicylidene)-ethylenediaminato-κ4N,N′,O,O′)nickel (II), C16H12Cl2NiN2O2
  79. Crystal structure of (E)-N′-(2-chloro-6-hydroxybenzylidene)-4-hydroxybenzohydrazide — dihydrofuran-2(3H)-one (1/1), C18H17ClN2O5
  80. Crystal structure of bis((3-bromosalicylidene)-ethylenediaminato-κ4N,N′,O,O′) nickel (II), C16H12Br2NiN2O2
  81. Crystal structure of trimethylsulfoxonium tetrachloridocobaltate(II) [(CH3)3SO]2CoCl4
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