Home Crystal structure of 1-(3-chlorophenyl)-4-(4-(((2,3-dihydro-1H-inden-5-yl)oxy)methyl)phenethyl)piperazine, C28H31ClN2O
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Crystal structure of 1-(3-chlorophenyl)-4-(4-(((2,3-dihydro-1H-inden-5-yl)oxy)methyl)phenethyl)piperazine, C28H31ClN2O

  • Aiqing Feng ORCID logo EMAIL logo and Bin Lv
Published/Copyright: March 25, 2020

Abstract

C28H31ClN2O, monoclinic, P1̄ (no. 2), a = 21.9309(11) Å, b = 9.9648(5) Å, c = 11.0049(7) Å, β = 93.403(6)°, V = 2400.7(2) Å3, Z = 4, Rgt(F) = 0.0566, wRref(F2) = 0.1355, T = 293 K.

CCDC no.: 1983018

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.18 × 0.15 × 0.13 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.18 mm−1
Diffractometer, scan mode:SuperNova, ω
θmax, completeness:25.0°, >99%
N(hkl)measured, N(hkl)unique, Rint:12758, 4213, 0.028
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2973
N(param)refined:289
Programs:SHELX [1], Olex2 [2], CrysAlisPRO [3]

Source of material

The title compound was synthesized from 4-(((2,3-dihydro-1H-inden-5-yl)oxy)methyl)phenethyl 4-methylbenzenesulfonate in form of light yellow crystals. To a solution of 4-(((2,3-dihydro-1H-inden-5-yl)oxy)methyl)phenethyl 4-methyl-benzenesulfonate (100 mg, 0.23 mmol) in acetonitrile (CH3CN, 10 mL) was added 1-(3-chlorophenyl)piperazine (54 mg, 0.27 mmol) and potassium carbonate (190 mg, 1.38 mmol). The reaction mixture was stirred at reflux for 16 h. The mixture was filtered before cooling to ambient. The filtrate was concentrated in vacuo and the residue was purified by silica gel column chromatography using ethyl acetate/petroleum ether (1/15, v/v) as eluent to obtain the product as a light yellow solid. Yield: 71%; Mp. 83-84 °C (HCl salt); 1H NMR (500 MHz, CDCl3) δ [ppm] 7.40 (d, J = 7.9 Hz, 2H), 7.28 (d, J = 2.3 Hz, 1H), 7.20 (t, J = 8.1 Hz, 1H), 7.15 (d, J = 8.2 Hz, 1H), 6.92 (t, J = 2.0 Hz, 1H), 6.90 (s, 1H), 6.86–6.79 (m, 3H), 5.04 (s, 2H), 3.35–3.18 (m, 4H), 2.99–2.81 (m, 6H), 2.71 (dd, J = 16.0, 7.0 Hz, 6H), 2.16–2.05 (m, 2H). 13C NMR (126 MHz, CDCl3) δ [ppm] 157.81, 152.29, 145.75, 139.72, 136.48, 135.29, 134.99, 130.05, 128.92, 127.74, 124.76, 119.36, 115.81, 113.91, 112.84, 110.94, 70.10, 60.30, 53.00, 48.62, 33.21, 32.02, 29.73, 25.86; HRMS (ESI) m/z [M + 1]+: calcd. for C28H31ClN2O, 447.2198, found, 447.2196.

Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cl10.95801(3)0.13164(8)0.32362(9)0.0820(3)
O10.30527(8)0.36018(18)0.92112(17)0.0575(5)
N10.75550(8)0.3461(2)0.42215(18)0.0448(5)
N20.65779(9)0.3809(2)0.58260(18)0.0482(5)
C10.05755(13)0.1458(4)1.0455(3)0.0779(10)
H1A0.02070.17340.99900.094*
H1B0.04810.06771.09340.094*
C20.10706(12)0.1124(3)0.9606(3)0.0633(8)
H2A0.12230.02220.97550.076*
H2B0.09160.11910.87640.076*
C30.15654(11)0.2140(2)0.9881(2)0.0471(6)
C40.21119(11)0.2312(3)0.9320(2)0.0497(6)
H40.22110.17510.86860.060*
C50.25040(11)0.3321(3)0.9713(2)0.0475(6)
C60.23540(11)0.4163(3)1.0657(2)0.0502(7)
H60.26190.48471.09160.060*
C70.18104(12)0.3982(3)1.1210(2)0.0529(7)
H70.17110.45441.18420.063*
C80.14149(11)0.2969(3)1.0826(2)0.0498(6)
C90.08040(13)0.2580(3)1.1277(3)0.0719(9)
H9A0.08480.22791.21160.086*
H9B0.05240.33341.12250.086*
C100.32434(11)0.2709(3)0.8299(2)0.0533(7)
H10A0.29360.26760.76280.064*
H10B0.32920.18130.86330.064*
C110.38385(11)0.3184(2)0.7847(2)0.0463(6)
C120.40245(11)0.2679(3)0.6751(2)0.0508(7)
H120.37780.20680.63130.061*
C130.45739(11)0.3079(3)0.6307(2)0.0525(7)
H130.46900.27230.55740.063*
C140.49538(11)0.3990(3)0.6920(3)0.0507(7)
C150.47636(12)0.4489(3)0.8006(3)0.0602(8)
H150.50080.51070.84410.072*
C160.42141(12)0.4086(3)0.8465(3)0.0591(7)
H160.41000.44340.92020.071*
C170.55386(12)0.4451(3)0.6399(3)0.0621(8)
H17A0.54480.47600.55720.074*
H17B0.56990.52080.68710.074*
C180.60224(11)0.3379(3)0.6388(3)0.0596(8)
H18A0.61280.31040.72190.072*
H18B0.58550.26040.59510.072*
C190.70695(11)0.2854(3)0.6097(3)0.0619(8)
H19A0.69500.19790.57810.074*
H19B0.71420.27760.69720.074*
C200.76509(11)0.3295(3)0.5540(2)0.0571(7)
H20A0.77870.41390.59030.069*
H20B0.79680.26320.57150.069*
C210.70578(10)0.4401(3)0.3939(2)0.0470(6)
H21A0.69830.44670.30640.056*
H21B0.71710.52840.42480.056*
C220.64837(11)0.3936(3)0.4506(2)0.0495(6)
H22A0.61580.45740.43150.059*
H22B0.63600.30760.41620.059*
C230.80744(10)0.3531(2)0.3537(2)0.0426(6)
C240.85340(11)0.2564(2)0.3714(2)0.0469(6)
H240.85050.19160.43160.056*
C250.90288(11)0.2568(3)0.3000(2)0.0501(7)
C260.90951(12)0.3506(3)0.2096(3)0.0559(7)
H260.94310.34950.16190.067*
C270.86455(12)0.4456(3)0.1928(2)0.0555(7)
H270.86800.51020.13250.067*
C280.81439(11)0.4480(3)0.2628(2)0.0479(6)
H280.78480.51400.24900.057*

Experimental details

The hydrogen atoms were placed in calculated positions and refined using a riding model on attached atoms with isotropic thermal parameters 1.2 times those of their carrier atoms.

Comment

Arylpiperazines are great important kinds of drug molecules, and have various bioactivties such as antiarrhythmic, diuretic, antiallergic, antidepressant, anxiolytic, antipsychotic, antimalarial, and antiplasmodial [4], [5], [6], [7], [8], [9], [10], [11], [12]. Some of these compounds have good receptor-blocking properties [13]. According to experiments of the testprostate cancer cells, arylpiperazine derivatives have displayed significant cytotoxic [14]. Although some crystal structures of arylpiperazine derivatives have been reported recently [15], [16], the different functional groups and organic ligands would lead to different properties. Therefore, to further study and explore the new arylpiperazine, we report the crystal structure of the title compound.

The molecule of the title compound displays the 2,3-dihydro-1H-indene, piperazine ring, and two benzene ring groups. One nitrogen atom of piperazine connects the phenylethyl moiety via C—N bond, and the other N links to the carbon atom of chlorobenzene. Furthermore, the above mentioned phenylethyl extends connection of 2,3-dihydro-1H-indene group a C—O bond (see the figure). The 2,3-dihydro-1H-indene group, piperazine unit, and two aryl moieties are not in the same plane. The whole molecule displays a twisty conformation. In the molecule, the Cl1—C25, O1—C10, O1—C5, N1—C20, N1—C23, N1—C21, N2—C22, N2—C19, and N2—C18 bond lengths are found to be 1.746(3) Å, 1.423(3) Å, 1.382(3) Å, 1.464(3) Å, 1.404(3) Å, 1.457(3) Å, 1.461(3) Å, 1.455(3) Å, and 1.463(3) Å, respectively, which are nearly equal to other typical single bonds. The bond angles C5—O1—C10, C23—N1—C20, C23—N1—C21, C21—N1—C20, C22—N2—C18, C19—N2—C22, C19—N2—C18, N2—C22—C21, N1—C20—C19, C24—C23—N1, C28—C23—N1, N1—C21—C22, C24—C25—Cl1, C26—C25—Cl1, N2—C19—C20, N2—C18—C17, O1—C10—C11, O1—C5—C6, 115.3(2)°, and C4—C5—O1 are 117.05(19)°, 117.67(19)°, 118.31(19)°, 110.22(19)°, 112.0(2)°, 108.7(2)°, 110.32(19)°, 111.4(2)°, 111.1(2)°, 119.4(2)°, 123.1(2)°, 110.3(2)°, 118.4(2)°, 119.32(19)°, 111.0(2)°, 113.6(2)°, 109.6(2)°, and 115.3(2)°, respectively.

Acknowledgements

The work was supported by Science and Technology Planning Project of Henan Province of China (172102110105) for financial assistances.

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Received: 2020-01-03
Accepted: 2020-02-10
Published Online: 2020-03-25
Published in Print: 2020-06-25

©2020 Aiqing Feng et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  49. Crystal structure of (E)-3-methoxy-N′-(1-(pyridin-2-yl)ethylidene)benzohydrazide, C15H15N3O2
  50. Crystal structure of dichloro-bis-(1-butyl-1H-benzo[d]imidazole)-nickel(II), C22H28Cl2N4Ni
  51. The crystal structure of 2-(2,3-dimethoxyphenyl)-3-hydroxy-4H-chromen-4-one, C17H14O5
  52. The crystal structure of 5-(2-(4-fluorophenyl)hydrazono)-4-methyl-2-((3-(5-methyl-1-(4-methylphenyl)-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazol-4-yl)methylene) hydrazono)-2,5-dihydrothiazole dimethylformamide monosolvate, C30H25FN10S⋅C3H7NO
  53. The crystal structure of 1,8-bis(pyridin-4-ylethynyl)anthracene-1,2,4,5-tetrafluoro-3,6-diiodobenzene (2/1), C62H32F4I2N4
  54. The crystal structure of 3,6-di-tert-butyl-1,8-diiodo-9-methyl-9H-carbazole, C21H25I2N
  55. The crystal structure of 8-((4-chlorophenylamino)methylene)-6,10-dioxaspiro[4.5]decane-7,9-dione, C15H14ClNO4
  56. The crystal structure of catena-poly[oktaaqua-bis(μ2-4,4′-ethene-1,2-diyldipyridine-κ2N:N′)-(μ2-3,3′-(1-oxidodiazene-1,2-diyl)diphthalato-κ2O:O′)dicobalt(II)] dihydrate, C28H36N4O19Co2
  57. Crystal structure of (E)-1-(2-cyano-3-oxo-1-phenylprop-1-en-1-yl)-3,7-diphenylindolizine-6-carbonitrile, C31H19N3O
  58. Crystal structure of 1,1′-bis(diphenylphosphino)ferrocene-(1,1′-bis(diphenylphosphino)ferrocene-κ2P,P′)-(O-isobutyl sulfurodithioito-κ2S,S′)copper(I), C39H37CuFeOP2S2
  59. Crystal structure of poly[(5-bimethylamino-1-naphthalenesulfonato-κO)-(μ3-hexamethylenetetramino-κ3N:N′:N′′)silver(I)] dihydrate, C36H52Ag2N10O8S2
  60. Crystal structure of poly[μ2-diaqua-(μ2-2-amino-4,5-dicyano-κ2N:N′-imidazol-1-ide)sodium(I)], C5H6N5O2Na
  61. Crystal structure of (1,3-propanediamine-κ2N,N′)(N-(3-aminopropyl)-α-methyl aspartato-κ4N,N′,O,O′)cobalt(III) chloride, C11H24ClCoN4O4
  62. Crystal structure and anti-inflammatory activity of (3E,5E)-3,5-bis(4-fluorobenzylidene)-1-((4-fluorophenyl)sulfonyl)piperidin-4-one-dichloromethane (1/1), C26H20Cl2F3NO3S
  63. Crystal structure of (S)-(+)-1-cyclohexylethylaminium chloride, C8H18NCl
  64. The crystal structure of tris(nitrato-κ2O,O′)-bis(4,4,5,5-tetramethyl-2-(o-pyridyl)imidazoline-1-oxyl 3-oxide-κ2N,O)yttrium(III), C24H32N9O13Y
  65. Hydrogen bonding versus packing effects in the crystal structure of 3-((1R,2S)-1-methylpyrrolidin-1-ium-2-yl)pyridin-1-ium tetraiodidozincate(II), C10H16I4ZnN2
  66. Dimerization of 2-[(2-((2-aminophenyl)thio)phenyl)amino]-cyclohepta-2,4,6-trien-1-one through hydrogen bonding, C19H16N2OS
  67. Crystal structure of 1-(4-chloro-phenyl)-7-ethoxyl-6,8-difluoro-4-oxo-1,4-dihydro-quinoline-3-carboxylic acid, C18H12ClF2NO4
  68. Crystal structure of 7-ethoxy-6,8-difluoro-4-oxo-1-pyridin-2-ylmethyl-1,4-dihydro-quinoline-3-carboxylic acid, C18H14F2N2O4
  69. Crystal structure of octahydro-7aR,8′R-dimethylspiro[isobenzofuran-4(1H), 4′ (3′H)-[1H-7,9a]methanocyclohepta[c]pyran]-1′,3, 9′ (3aH,4′aH)-trione, C20H26O5
  70. Crystal structure of bis(5-ethoxy-2-(((1-hydroxy-2-methyl-3-oxidopropan-2-yl)imino)methyl)phenolato-κ3N,O,O’)manganese(IV) – methanol (1/1), C27H38MnN2O9
  71. Crystal structure of 8a,8a′′-oxybis(8aH-8,9-dioxa-3a1λ4-aza-8aλ4-borabenzo[fg]tetracene), C34H22B2N2O5
  72. Crystal structure of bromido-triphenyl-(triphenylarsine oxide-κO)tin(IV), C36H30AsBrOSn
  73. Crystal structure of catena-poly[chlorido-(μ2-formato-κ2O:O′)-(1,10-phenathroline-κ2N,N′)copper(II)], C26H18Cl2Cu2N4O4
  74. The crystal structure of poly[(μ10-5-carboxyisophthalato-κ10O)disodium], C9H4Na2O6
  75. The crystal structure of 3,5-difluoroisonicotinic acid, C6H3F2NO2
  76. The crystal structure of ethyl-1-(N-(adamantan-1-yl)-carbamothioyl)piperidine-4-carboxylate, C19H30N2O2S
  77. Crystal structure of 5-methyl-3-phenyl-1-tosyl-1,2,3,4-tetrahydropyridine, C19H21NO2S
  78. Crystal structure of bis((3-chlorosalicylidene)-ethylenediaminato-κ4N,N′,O,O′)nickel (II), C16H12Cl2NiN2O2
  79. Crystal structure of (E)-N′-(2-chloro-6-hydroxybenzylidene)-4-hydroxybenzohydrazide — dihydrofuran-2(3H)-one (1/1), C18H17ClN2O5
  80. Crystal structure of bis((3-bromosalicylidene)-ethylenediaminato-κ4N,N′,O,O′) nickel (II), C16H12Br2NiN2O2
  81. Crystal structure of trimethylsulfoxonium tetrachloridocobaltate(II) [(CH3)3SO]2CoCl4
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