Home The crystal structure of 1,3-bis(4-(methoxycarbonyl)benzyl)-2-methyl-1H-benzo[d]imidazol-3-ium bromide, C26H25BrN2O4
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The crystal structure of 1,3-bis(4-(methoxycarbonyl)benzyl)-2-methyl-1H-benzo[d]imidazol-3-ium bromide, C26H25BrN2O4

  • Bin Cai , Chun-Yan Fu ORCID logo EMAIL logo , Xin-Yu Guo and Ying Wang
Published/Copyright: May 11, 2020

Abstract

C26H25BrN2O4, triclinic, P1̄ (no. 2), a = 9.4202(5) Å, b = 9.7871(5) Å, c = 15.0135(9) Å, α = 106.775(3)°, β = 92.534(3)°, γ = 117.424(3)°, V = 1150.52(11) Å3, Z = 2, Rgt(F) = 0.0316, wRref(F2) = 0.0671, T = 150(2) K.

CCDC no.: 1960463

The title salt structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless needle
Size:0.25 × 0.20 × 0.10 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.82 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
θmax, completeness:26.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:22877, 4722, 0.056
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3913
N(param)refined:302
Programs:Bruker [1], SHELX [2], Olex2 [3], [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Br10.39309(3)0.71322(3)0.02283(2)0.02496(8)
C10.1072(3)0.1218(2)0.12137(14)0.0187(4)
C20.1948(3)0.0379(3)0.10799(15)0.0235(5)
H20.3067670.0897800.1041770.028*
C30.1099(3)−0.1247(3)0.10059(15)0.0257(5)
H30.165067−0.1864950.0919390.031*
C4−0.0551(3)−0.2009(3)0.10548(15)0.0243(5)
H4−0.109411−0.3134830.0994100.029*
C5−0.1419(3)−0.1170(2)0.11894(15)0.0205(4)
H5−0.254238−0.1691010.1219930.025*
C6−0.0560(2)0.0470(2)0.12769(14)0.0174(4)
C70.0236(3)0.3049(3)0.13856(14)0.0203(4)
C80.0222(3)0.4589(3)0.14653(16)0.0274(5)
H8A0.0462830.5254990.2138180.041*
H8B−0.0857670.4322810.1158590.041*
H8C0.1053230.5206660.1151850.041*
C90.3156(3)0.3995(3)0.12139(16)0.0261(5)
H9A0.3071420.4823600.0996410.031*
H9B0.3549780.3407180.0727690.031*
C100.4394(3)0.4866(2)0.21385(15)0.0210(5)
C110.3998(3)0.5025(3)0.30261(16)0.0281(5)
H110.2881880.4539870.3073430.034*
C120.5210(3)0.5885(3)0.38467(16)0.0274(5)
H120.4923200.5981890.4451610.033*
C130.6839(3)0.6601(3)0.37835(15)0.0223(5)
C140.8211(3)0.7525(3)0.46280(16)0.0272(5)
C150.7243(3)0.6456(3)0.28950(16)0.0261(5)
H150.8359350.6955300.2849350.031*
C160.6036(3)0.5593(3)0.20780(16)0.0250(5)
H160.6325080.5494310.1473560.030*
C17−0.2665(3)0.1412(3)0.15632(15)0.0218(5)
H17A−0.3528120.0299760.1151320.026*
H17B−0.2872210.2224850.1401070.026*
C18−0.2724(3)0.1611(3)0.25980(15)0.0210(5)
C19−0.3324(3)0.0252(3)0.28832(16)0.0246(5)
H19−0.378555−0.0817810.2419730.030*
C20−0.3254(3)0.0442(3)0.38340(16)0.0262(5)
H20−0.365377−0.0494700.4021760.031*
C21−0.2600(3)0.2003(3)0.45202(16)0.0259(5)
C22−0.2056(3)0.3353(3)0.42323(18)0.0358(6)
H22−0.1640470.4418650.4692640.043*
C23−0.2114(3)0.3160(3)0.32841(17)0.0335(6)
H23−0.1732910.4095860.3096100.040*
C24−0.2381(3)0.2271(3)0.55538(17)0.0306(5)
C25−0.2742(3)0.1033(4)0.67171(18)0.0413(7)
H25A−0.1564340.1524910.6947770.062*
H25B−0.331708−0.0051050.6779150.062*
H25C−0.3131280.1740840.7094220.062*
C260.9006(3)0.8440(3)0.62869(17)0.0407(7)
H26A0.9599640.7839250.6284640.061*
H26B0.8539340.8532490.6857500.061*
H26C0.9759710.9540400.6286290.061*
N10.1527(2)0.2819(2)0.12819(12)0.0199(4)
N2−0.1038(2)0.1657(2)0.13919(12)0.0173(4)
O10.77036(19)0.7564(2)0.54478(11)0.0319(4)
O20.9624(2)0.8150(3)0.45785(13)0.0473(5)
O3−0.1664(2)0.3611(2)0.61727(12)0.0447(5)
O4−0.3057(2)0.0864(2)0.57299(11)0.0331(4)

Source of material

All reagents were purchased and used as received. The title compound was synthesized according to reference [5]: Under stirring, 1.32 g 2-methyl-1H-benzo[d]imidazole (10.0 mmol) was added to 50 mL acetone, then 4.56 g 4-(methoxycarbonyl) benzyl bromide (20.0 mmol) was added in portions. The mixture was stirred under reflux for 24 h. The volume was reduced to ca. 10 mL by rotary evaporation and then cooled to room temperature, after which a white precipitate appeared, washed with acetone, and air-dried, yield 72.6%. The precipitate was transferred to 20 mL of THF solution, then filtered after stirred for 5 min. The filtrate let evaporation for several hours to get colorless crystals yield 87.4%.

Experimental details

The structure was solved by direct methods with the SHELXS-2018 program. All H-atoms from C atoms were positioned with idealized geometry and refined isotropically (Uiso(H) = 1.2Ueq(C) using a riding model with C—H = 0.95, 0.98 and 0.99 Å.

Comment

N-heterocyclic carbenes (NHCs) and metal NHCs have been focused on scientific researchers for catalysts and medicinal applications [6]. Known as important precusors for NHCs, 1,3-bis(4-(methoxycarbonyl)benzyl)-1H-imidazol-3-ium bromide and 1,3-bis(4-(methoxycarbonyl)benzyl)-1H-benzo[d]imidazol-3-ium bromide, or their derivatives, including metal NHCs, have been reported [7], [8]. Furthermore, lanthanide complexes have been studied [9].

The title organic salt as shown in the figure, the asymmetric unit consists of one 1,3-bis(4-(methoxycarbonyl)benzyl)-2-methyl-1H-benzo[d]imidazol-3-ium cation and one bromide anion. The skeleton of the benzimidazole is nearly planar. The two 4-(methoxycarbonyl)benzyl groups look like two arms, which adapt a configuration that the angles of C10⋯C9⋯N1 and C18⋯C17⋯N2 are 114° and 110°, respectively. There are three kinds of weak intermolecular short contacts, such as C—H⋯O, C—H⋯Br and C—H⋯π, which are linked each other to generate a three-dimensional structure. All bond lengths and angles are in normal ranges [5], [7], [8], [9], [10].

References

1. Bruker. SAINT v8.37A. Bruker AXS Inc, Madison, WI, USA (2015).Search in Google Scholar

2. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

3. Bourhis, L. J.; Dolomanov, O. V.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: The anatomy of a comprehensive constrained, restrained refinement program for the modern computing environment – Olex2 dissected. Acta Crystallogr. A71 (2015) 59–75.10.1107/S2053273314022207Search in Google Scholar

4. Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Crystallogr. 42 (2009) 339–341.10.1107/S0021889808042726Search in Google Scholar

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6. Bourissou, D.; Guerret, O.; Gabbai, F. P.; Bertrand, G.: Stable carbenes. Chem. Rev. 100 (2000) 39–91.10.1021/cr940472uSearch in Google Scholar PubMed

7. Patil, S.; Dietrich, K.; Deally, A.; Gleeson, B.; Müller-Bunz, H.; Paradisi, F.; Tacke, M.: Synthesis, cytotoxicity and antibacterial studies of novel symmetrically and nonsymmetrically 4-(methoxycarbonyl)benzyl-substituted n-heterocyclic carbene-silver acetate complexes. Helv. Chim. Acta 93 (2010) 2347–2364.10.1002/hlca.201000310Search in Google Scholar

8. Hackenberg, F.; Lally, G.; Müller-Bunz, H.; Paradisi, F.; Quaglia, D.; Streciwilk, W.; Tacke, M.: Novel symmetrically p-benzyl-substituted 4,5-diaryl-imidazole N-heterocyclic carbene-silver(I) acetate complexes-synthesis and biological evaluation. J. Organomet. Chem. 717 (2012) 123–134.10.1016/j.jorganchem.2012.07.006Search in Google Scholar

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Received: 2019-08-25
Accepted: 2019-10-21
Published Online: 2020-05-11
Published in Print: 2020-06-25

©2020 Bin Cai et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  72. Crystal structure of bromido-triphenyl-(triphenylarsine oxide-κO)tin(IV), C36H30AsBrOSn
  73. Crystal structure of catena-poly[chlorido-(μ2-formato-κ2O:O′)-(1,10-phenathroline-κ2N,N′)copper(II)], C26H18Cl2Cu2N4O4
  74. The crystal structure of poly[(μ10-5-carboxyisophthalato-κ10O)disodium], C9H4Na2O6
  75. The crystal structure of 3,5-difluoroisonicotinic acid, C6H3F2NO2
  76. The crystal structure of ethyl-1-(N-(adamantan-1-yl)-carbamothioyl)piperidine-4-carboxylate, C19H30N2O2S
  77. Crystal structure of 5-methyl-3-phenyl-1-tosyl-1,2,3,4-tetrahydropyridine, C19H21NO2S
  78. Crystal structure of bis((3-chlorosalicylidene)-ethylenediaminato-κ4N,N′,O,O′)nickel (II), C16H12Cl2NiN2O2
  79. Crystal structure of (E)-N′-(2-chloro-6-hydroxybenzylidene)-4-hydroxybenzohydrazide — dihydrofuran-2(3H)-one (1/1), C18H17ClN2O5
  80. Crystal structure of bis((3-bromosalicylidene)-ethylenediaminato-κ4N,N′,O,O′) nickel (II), C16H12Br2NiN2O2
  81. Crystal structure of trimethylsulfoxonium tetrachloridocobaltate(II) [(CH3)3SO]2CoCl4
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