Home Crystal structure of 5-((bis(pyridin-2-ylmethyl)amino)methyl)quinolin-8-ol, C22H20N4O
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Crystal structure of 5-((bis(pyridin-2-ylmethyl)amino)methyl)quinolin-8-ol, C22H20N4O

  • Liu Jia , Nie Xu-Liang ORCID logo , Yin Zhong-Ping , Peng Da-Yong and Shi Xu-Gen EMAIL logo
Published/Copyright: December 7, 2019

Abstract

C22H20N4O, monoclinic, P21/n (no. 14), a = 11.1861(14) Å, b = 8.1418(10) Å, c = 20.461(3) Å, β = 97.433(1)°, V = 1847.8(4) Å3, Z = 4, Rgt(F) = 0.0357, wRref(F2) = 0.1002, T = 296(2) K.

CCDC no.: 1967398

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless block
Size:0.22 × 0.20 × 0.18 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.08 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
θmax, completeness:25.5°, >99%
N(hkl)measured, N(hkl)unique, Rint:13705, 3436, 0.022
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2957
N(param)refined:246
Programs:Bruker [1], SHELX [2], [4], Diamond [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C1−0.06848(10)0.98768(15)0.09543(6)0.0360(3)
C2−0.13990(10)0.84683(16)0.07603(6)0.0368(3)
C3−0.08755(11)0.71292(17)0.05185(7)0.0428(3)
H3−0.13400.62080.03920.051*
C40.03643(11)0.71287(16)0.04585(6)0.0418(3)
H40.07020.61940.02950.050*
C50.10890(10)0.84489(16)0.06307(6)0.0367(3)
C60.05632(10)0.98692(15)0.08864(6)0.0355(3)
C70.12055(12)1.13266(17)0.10691(7)0.0446(3)
H70.20221.13970.10280.054*
C80.06307(13)1.26273(18)0.13053(8)0.0556(4)
H80.10481.35910.14270.067*
C9−0.05961(14)1.24927(19)0.13625(9)0.0594(4)
H9−0.09741.33870.15310.071*
C100.24011(10)0.84430(17)0.05288(6)0.0405(3)
H10A0.25790.74320.03100.049*
H10B0.25510.93510.02430.049*
C110.43829(11)0.92599(17)0.10635(6)0.0405(3)
H11A0.42781.00700.07130.049*
H11B0.48850.83860.09270.049*
C120.50203(11)1.00515(16)0.16792(6)0.0391(3)
C130.44034(13)1.0796(2)0.21454(7)0.0526(4)
H130.35661.07600.21020.063*
C140.50437(15)1.1587(2)0.26718(8)0.0624(4)
H140.46451.21010.29870.075*
C150.62819(15)1.1609(2)0.27255(8)0.0621(4)
H150.67381.21290.30780.074*
C160.68226(13)1.0846(2)0.22464(7)0.0575(4)
H160.76601.08630.22830.069*
C170.32884(12)0.70665(18)0.15481(7)0.0456(3)
H17A0.24780.66700.15740.055*
H17B0.36510.73250.19930.055*
C180.40046(12)0.57078(17)0.12827(7)0.0455(3)
C190.52143(14)0.5511(2)0.15003(10)0.0662(5)
H190.55880.61610.18410.079*
C200.58645(16)0.4348(2)0.12099(12)0.0790(6)
H200.66820.42030.13510.095*
C210.52980(17)0.3411(2)0.07140(10)0.0687(5)
H210.57200.26240.05060.082*
C220.40921(17)0.3655(2)0.05279(9)0.0661(4)
H220.37060.30050.01910.079*
N1−0.12520(10)1.11830(15)0.11940(6)0.0490(3)
N20.32105(9)0.85852(13)0.11536(5)0.0387(3)
N30.62209(9)1.00775(15)0.17292(5)0.0458(3)
N40.34360(11)0.47737(15)0.08026(7)0.0570(3)
O1−0.25972(7)0.84404(12)0.08057(5)0.0479(3)
H1−0.27620.91760.10530.072*

Source of material

To a mixture of 8-hydroxyquinoline-5-carbaldehyde (1.04 g, 6 mmol) and bis(pyridin-2-ylmethyl)amine (1.22 g, 6 mmol) in CH2Cl2 (50 mL) was added sodium triacetoxyborohydride (1.4 g, 6.6 mmol) at 0 °C. The mixture was stirred for 24 h at room temperature. Dichloromethane was removed by evaporation and the residue was purified by chromatography on silica gel (eluent: ethyl acetate) to give the yellow solid [5], [6]. m.p. 102 °C–106 °C; 1H NMR (400 MHz, CDCl3) δ [ppm] 8.78–8.73 (m, 1H), 8.65–8.57 (m, 1H), 8.56–8.51 (m, 2H), 7.67–7.60 (m, 2H), 7.55–7.49 (m, 1H), 7.48–7.42 (m, 1H), 7.41–7.35 (m, 2H), 7.21–7.13 (m, 2H), 7.06 (d, J = 7.8 Hz, 1H), 4.25–4.14 (m, 2H), 4.06–3.95 (m, 4H); 13C NMR (100 MHz, CDCl3) δ [ppm] 158.07, 152.08, 148.51, 147.48, 138.48, 136.81, 133.99, 129.86, 127.77, 124.02, 123.65, 122.31, 121.53, 108.94, 59.681, 56.29.

Experimental details

All H atoms were included in calculated positions and refined with O—H = 0.82 Å with Uiso(H) = 1.2 Ueq(O), with C—H = 0.93 Å with Uiso(H) = 1.5 Ueq(C) for methyl H atoms and 1.2 Ueq(C) for all other H atoms [4].

Comment

The tailorability of hydroquinoline (HQ) arises from the activation of positions 5 and 7 and leads to numerous HQ-based derivatives [7], [8], [9], [10], [11]. In this article we report the synthesis and crystal structure of 5-((bis(pyridin-2-ylmethyl)amino)methyl)quinolin-8-ol, which is a fluorescence probe.

There is one crystallographic independant molecule in the asymmtric unit (see the figure). In the molecule of the title compound bond lengths and angles are very similar to those given in the literature [11]. The quinoline ring and two pyridine rings are connected to the same nitrogen atom (N2) through the methylene group. The dihedral angles of quinoline ring and two pyridine rings to each other are 32.3°, 37.3° and 20.7°. The molecular conformation is characterized by the C5—C10—N2—C11, C18—C12—N2—C10 and C13—C11—N2—C10, torsion angles of 155.8°, 73.4° and 156.5° respectively.

Acknowledgements

X-ray data were collected at Instrumental Analysis Center Hangkong University, Nanchang, 330063, China. This research has been supported by the 13th Five-Year National Key Research Program of China (2017YFD0301604), the National Natural Science Foundation of China (Grant Nos. 21562022, 31660527), The Natural Science Foundation of Jiangxi Province (Grant No. 20181BAB203015), The Research Foundation of Educational Department of Jiangxi Province [GJJ180204].

References

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Received: 2019-10-17
Accepted: 2019-11-22
Published Online: 2019-12-07
Published in Print: 2020-02-25

©2019 Liu Jia et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  77. Low temperature redetermination of the crystal structure of catena-poly[[tri-4-fluorobenzyltin(IV)]μ2-pyridine-4-carboxylato-κ2N:O], {C27H22F3NO2Sn}n
  78. Crystal structure of bis(2-propyl-1H-benzo[d]imidazol-3-ium) tetrachloridozincate(II), C10H13Cl4N2Zn
  79. The crystal structure of (Z)-3-hydrazono-5-nitroindolin-2-one – dimethyl sulfoxide (1/1), C8H6N4O3
  80. Crystal structure of bis-[N-(1-pyrazin-2-yl-ethylidene)-cyanoacetic acid-hydrazonato-κ3O,N,N′)]-zinc(II), C18H16N10O2Zn
  81. Crystal structure and photochromism of 1-(2,5-dimethyl-3-thienyl)-2-[2-methyl-5-(benzaldoxime)-3-thienyl] perfluorocyclopentene, C23H17F6NOS2
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