Home Crystal structure of 5,5-dimethyl-3-oxocyclohex-1-en-1-yl 4-(2,2-dichloroacetyl)-3,4-dihydro-2 H-benzo[b][1,4]oxazine-7-carboxylate, C19H19Cl2NO5
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Crystal structure of 5,5-dimethyl-3-oxocyclohex-1-en-1-yl 4-(2,2-dichloroacetyl)-3,4-dihydro-2 H-benzo[b][1,4]oxazine-7-carboxylate, C19H19Cl2NO5

  • You-Yuan Guo , Huan Wang , Xin Ma and Ying Fu ORCID logo EMAIL logo
Published/Copyright: November 9, 2019

Abstract

C19H19Cl2NO5, orthorhombic, Pbca (no. 61), a = 12.6750(18) Å, b = 11.0927(17) Å, c = 28.400(4) Å, V = 3993.0(10) Å3, Z = 8, Rgt(F) = 0.0700, wRref(F2) = 0.2011, T = 293(2) K.

CCDC no.: 1959881

The crystal structure is shown in the figure (Hydrogen atoms are omitted for clarity). Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Block, colorless
Size:0.15 × 0.12 × 0.10 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.35 mm−1
Diffractometer, scan mode:Bruker D8 VENTURE PHOTON II, φ and ω-scans
θmax, completeness:28.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:35421, 4974, 0.067
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2812
N(param)refined:246
Programs:Bruker programs [1], SHELX [2], DIAMOND [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cl10.80420(11)1.21969(12)0.06655(5)0.1024(5)
Cl20.62195(10)1.07126(13)0.04608(4)0.0920(4)
N10.67630(19)0.9859(3)0.15407(9)0.0524(7)
O10.8318(2)0.9969(3)0.11574(11)0.0948(11)
O20.52355(16)0.8104(2)0.17957(9)0.0680(7)
O30.6905(2)0.5503(3)0.30061(10)0.0808(9)
O40.86288(17)0.5906(2)0.29452(8)0.0621(7)
O50.9617(4)0.2522(3)0.38214(15)0.1489(19)
C10.7004(3)1.1364(4)0.09129(13)0.0689(10)
H10.65661.18950.11080.083*
C20.7438(3)1.0328(3)0.12162(12)0.0622(9)
C30.5632(3)1.0163(3)0.15892(13)0.0626(9)
H3A0.54501.08120.13750.075*
H3B0.54861.04290.19080.075*
C40.4995(3)0.9079(3)0.14788(13)0.0632(9)
H4A0.42520.92760.15020.076*
H4B0.51370.88270.11580.076*
C50.6247(2)0.8044(3)0.19542(11)0.0488(7)
C60.7045(2)0.8858(3)0.18279(10)0.0466(7)
C70.8047(2)0.8701(3)0.20146(12)0.0552(8)
H70.85860.92260.19280.066*
C80.8253(2)0.7782(3)0.23246(11)0.0529(8)
H80.89290.76880.24470.063*
C90.7457(2)0.6995(3)0.24560(10)0.0482(7)
C100.6457(2)0.7122(3)0.22676(11)0.0526(8)
H100.59250.65870.23520.063*
C110.7598(3)0.6060(3)0.28245(11)0.0550(8)
C120.8802(2)0.5307(3)0.33723(11)0.0509(8)
C130.9125(3)0.4178(4)0.33704(13)0.0691(10)
H130.91980.37690.30870.083*
C140.9366(4)0.3570(4)0.38123(16)0.0835(13)
C150.9331(3)0.4297(4)0.42524(13)0.0702(10)
H15A1.00180.46590.43030.084*
H15B0.91900.37640.45160.084*
C160.8505(3)0.5285(3)0.42455(12)0.0580(8)
C170.8672(3)0.6037(3)0.38008(12)0.0650(9)
H17A0.80720.65700.37600.078*
H17B0.92940.65350.38420.078*
C180.8626(5)0.6085(5)0.46788(16)0.1056(17)
H18A0.93210.64280.46830.158*
H18B0.85210.56110.49580.158*
H18C0.81110.67190.46680.158*
C190.7407(3)0.4741(5)0.42446(15)0.0827(13)
H19A0.68920.53740.42280.124*
H19B0.73030.42860.45280.124*
H19C0.73310.42190.39770.124*

Source of material

Methyl 3,4-dihydro-2H-benzo[b][1,4]oxazine-7-carboxylate was synthesized with methyl 4-amino-3-hydroxybenzoate (18 mmol) and 1,2-dibromoethane (22 mmol) as raw materials, anhydrous K2CO3 (90 mmol) as the attaching acid agent in 50 mL DMAC, refluxed for 7 h at 80 °C (monitored by TLC) [4]. After the reaction, K2CO3 was removed by vacuum filtration, and the organic phase was separated with saturated salt water and ethyl acetate. The solution was dried by anhydrous Na2SO4 for 30 min, and then Na2SO4 was removed by vacuum filtration. The solvent was removed under vacuum. The crude product, red-brown solid was purified on silica gel by column chromatography [V(ethyl acetate):V(petroleum ether)=1:3] until a brown solid, methyl 3,4-dihydro-2H-benzo[b][1,4]oxazine-7-carboxylate, was obtained in 30% yield [5]. Methyl 3,4-dihydro-2H-benzo[b][1,4]oxazine-7-carboxylate (2.02 mmol) and 5% NaOH aq. (15 mL) were added to 25 mL EtOH to reflux for 5 h at 65 °C. After the reaction, the solution was diluted with water, cooled to room temperature, adjusted to pH = 5–6 with concentrated hydrochloric acid, extracted with CHCl3, and the organic layer was dried over anhydrous Na2SO4 for 30 min. Na2SO4 was removed by vacuum filtration, and then the solvent was removed under vacuum evaporating to obtain a light brown powder, 3,4-dihydro-2H-benzo[b][1,4]oxazine-7-carboxylic acid in 90% yield [6]. The acid (6.7 mmol) was dissolved in 25 mL THF, and 2,2-dichloroacetyl chloride (8.0 mmol) was added, whereas the reaction mixture was cooled by an ice-water bath. The mixture was reacted at room temperature for 2 h. After the reaction, the solvent was removed under vacuum. The crude product was washed with 30 mL CH2Cl2, and then the solvent was removed by filtration, Repeating three times to remove unreacted acid chloride. Light brown solid, 4-(2,2-dichloroacetyl)-3,4-dihydro-2H-1,4-benzoxazine-7-carboxylic acid was obtained in 96% yield. The acid (16.2 mmol) and SOCl2 (48.6 mmol) were dissolved in 25 mL THF, and DMF (5 drops) were used as catalyst. The mixture was refluxed for 2 h at 65 °C. After the reaction, the solvent was removed under vacuum evaporating to obtain 4-(2,2-dichloroacetyl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-carbonyl chloride. The acid chloride (10.6 mmol) was reacted with 5,5-dimethylcyclohexane-1,3-dione (12.7 mmol), Et3N (31.8 mmol) as the attaching acid agent in 25 mL THF (monitored by TLC). After the reaction an orange solid of the title compound was obtained in 81% yield.

Experimental details

The C—H atoms were then constrained to an ideal geometry, with C—H distances of 0.93–0.96 Å. The Uiso values of the hydrogen atoms of methyl groups were set to 1.5Ueq(Cmethyl) and the Uiso values of all other hydrogen atons were set to 1.2Ueq(C).

Discussion

Cyclohexanedione derivatives were critically important used as synthons and biological activities materials [7]. They were also used as medical or pharmaceutical intermediates [8], which have received great interest because of their excellent pharmacological activity and biological activity, organic synthesis intermediates, and agricultural chemicals [9], [10], [11]. 4-Hydroxyphenylpyruvate dioxygenase (HPPD), a target for green herbicide discovery, has attracted a large number of attention owing to controlling efficacy of resistant weeds [12], [13]. It is an important enzyme in the tyrosine metabolic pathway, belonging to the large family of 2-his-1-carboxylate facial triad oxidative enzymes. As an important enzyme correlated to the pigment synthesis and tyrosine catabolism in most organisms, HPPD is important in agricultural areas [14]. A large number of HPPD inhibitors have been discovered, researched and applied to control weed in the field of agrochemicals in recent several decades [15]. Based on our previous efforts to find novel HPPD-inhibiting compounds [16], herein we reported the synthesis and the crystal structure of substituted benzoxazine-cyclohexanedione.

In the crystal structure, the distance of C12–C13 (1.318(5) Å) is closer to the typical C=C bond, and the C13—C14 bond (1.457(6) Å) is shorter than typical C—C bond which is made by conjugation of carbonyl and C=C bond (C12—C13). The N atom and O atom form a conjugated system with benzene ring while methylene group does not. The carbonyl (C2=O1) forms a conjugated system with the oxazine ring. The mean plane of the cyclohexanedione is almost perpendicular to the mean plane of the benzoxazine moiety (see the figure). The van der Waals forces connect molecules into a one-dimensional chain structure.

Award Identifier / Grant number: 201910224019

Funding statement: The authors gratefully acknowledge the support by Undergraduated SIPT program of Northeast Agricultural University (No. 201910224019). We thank the editor for providing the figure.

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Received: 2019-09-10
Accepted: 2019-10-17
Published Online: 2019-11-09
Published in Print: 2020-02-25

©2019 You-Yuan Guo et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  61. Crystal structure of bis-[N-(3-ethyl-1-pyrazin-2-yl-ethylidene)-3-bromo-benzoic acid-hydrazonato-κ3O,N,N′)]-cadmium(II), C30H28N8O2Br2Cd
  62. Crystal structure of 6-(4-fluorophenyl)-4-methoxy-2H-pyran-2-one, C12H9FO3
  63. Crystal structure of 3-methyl-3-(2,4,5-trimethyl-3,6-dioxocyclohexa-1,4-dien-1-yl)butanoic acid, C14H18O4
  64. The crystal structure of 3-bromo-6-methoxy-2-methyl-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine, C13H19BBrNO3
  65. The crystal structure of 6-methyl-3,20-dioxo-19-norpregna-4,6-dien-17-yl acetate–2,4-dihydroxybenzoic acid (1/1), C30H36O8
  66. The crystal structure of (5-chloro-2-hydroxy-N-(4-methoxy-2-oxidobenzylidene)benzohydrazonato-κ3N,O,O′)-(pyridine-κ1N)copper(II), C20H16ClCuN3O4
  67. Crystal structure of (E)-2-cyano-N′-(1-(3-ethylpyrazin-2-yl)ethylidene)acetohydrazide, C11H3N5O
  68. Crystal structure of (2,7-dihexyl-9,9-dimethyl-9H-xanthene-4,5-diyl)bis(diphenylphosphane), C51H56OP2
  69. Crystal structure of 5-((bis(pyridin-2-ylmethyl)amino)methyl)quinolin-8-ol, C22H20N4O
  70. Crystal structure of 3-(2-(5-(4-fluorophenyl)-3-(4-methylphenyl)-4,5-dihydro-1H-pyrazol-1-yl)thiazol-4-yl)-2H-chromen-2-one, C28H20FN3O2S
  71. The crystal structure of [(tetra-μ2-2,6-difluorobenzoato-κ2O:O′)-bis-(2,6-difluorobenzoato-κ2O:O′)-bis-(1,10-phenanthroline-κ2N:N′)]dierbium(III) C66H34N4O12F12Er2
  72. Crystal structure of bis(3-chloro-N-(1-(pyrazin-2-yl)ethylidene)benzohydrazonato-k3N,N′,O)nickel(II), C26H20N8O2Cl2Ni
  73. Crystal structure of (E)-3-(3-(5-methyl-1-phenyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazol-4-yl)-1-phenylprop-2-en-1-one, C27H21N5O
  74. Crystal structure of (E)-N′-((4-aminophenyl)sulfonyl)-N,N-dimethylformimidamide, C9H13N3O2S
  75. Crystal structure of η6-p-cymene-iodido-(N-isopropyl-1-(pyridin-2-yl)methanimine-κ2N,N′)ruthenium(II) hexafluorophosphate(V), C19H26IN2F6Ru
  76. Crystal structure of 6-iodo-3-phenyl-2-propylquinazolin-4(3H)-one, C17H15IN2O
  77. Low temperature redetermination of the crystal structure of catena-poly[[tri-4-fluorobenzyltin(IV)]μ2-pyridine-4-carboxylato-κ2N:O], {C27H22F3NO2Sn}n
  78. Crystal structure of bis(2-propyl-1H-benzo[d]imidazol-3-ium) tetrachloridozincate(II), C10H13Cl4N2Zn
  79. The crystal structure of (Z)-3-hydrazono-5-nitroindolin-2-one – dimethyl sulfoxide (1/1), C8H6N4O3
  80. Crystal structure of bis-[N-(1-pyrazin-2-yl-ethylidene)-cyanoacetic acid-hydrazonato-κ3O,N,N′)]-zinc(II), C18H16N10O2Zn
  81. Crystal structure and photochromism of 1-(2,5-dimethyl-3-thienyl)-2-[2-methyl-5-(benzaldoxime)-3-thienyl] perfluorocyclopentene, C23H17F6NOS2
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