Home Crystal structure of 3-fluoro-9-methoxy-4b,5,14,15-tetrahydro-6H-isoquinolino [2′,1′:1,6]pyrazino[2,3-b]quinoxaline, C19H17FN4O
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Crystal structure of 3-fluoro-9-methoxy-4b,5,14,15-tetrahydro-6H-isoquinolino [2′,1′:1,6]pyrazino[2,3-b]quinoxaline, C19H17FN4O

  • Yu Hang Chen , Yan Rong Dan ORCID logo , Lin Ling Gan and Yu Yu EMAIL logo
Published/Copyright: December 14, 2019

Abstract

C19H17FN4O, orthorhombic, Pbca (no. 61), a = 7.0607(2) Å, b = 18.4459(5) Å, c = 23.8955(7) Å, V = 3112.17(15) Å3, Z = 8, Rgt(F) = 0.0543, wRref(F2) = 0.1540, T = 100(2) K.

CCDC no.: 1965166

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless block
Size:0.13 × 0.12 × 0.11 mm
Wavelength:Cu Kα radiation (1.54184 Å)
μ:0.83 mm−1
Diffractometer, scan mode:SuperNova, ω
θmax, completeness:73.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:7304, 3064, 0.041
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2487
N(param)refined:227
Programs:CrysAlisPRO [1], Olex2 [2], SHELX [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.7725(3)0.47235(10)0.34176(8)0.0161(4)
C20.9126(3)0.49070(11)0.30257(8)0.0187(4)
H20.9011490.4747120.2658100.022*
C31.0667(3)0.53198(11)0.31769(8)0.0180(4)
H31.1574750.5440760.2910790.022*
C41.0875(3)0.55595(10)0.37319(8)0.0159(4)
C50.9500(2)0.54038(10)0.41260(8)0.0147(4)
H50.9628420.5568660.4491890.018*
C60.7895(3)0.49913(10)0.39680(8)0.0144(4)
C70.5124(3)0.44158(10)0.42174(8)0.0145(4)
C80.5011(3)0.41067(10)0.36528(8)0.0151(4)
C90.1866(3)0.36515(11)0.38792(9)0.0221(5)
H90.1199760.4101160.3784690.027*
C100.2413(3)0.36799(12)0.44919(8)0.0224(5)
H10A0.1289830.3755830.4718010.027*
H10B0.2976520.3221720.4601290.027*
C110.0545(3)0.30193(11)0.37700(9)0.0202(4)
C120.0912(3)0.24947(11)0.33620(8)0.0178(4)
C130.2700(3)0.25356(11)0.30203(9)0.0230(5)
H13A0.2459210.2349520.2647340.028*
H13B0.3668490.2235960.3191740.028*
C140.3404(3)0.33130(12)0.29804(8)0.0213(4)
H14A0.4618990.3324790.2791150.026*
H14B0.2514930.3601710.2765660.026*
C15−0.0403(3)0.19428(11)0.32749(8)0.0205(4)
H15−0.0163320.1595890.3001430.025*
C16−0.2058(3)0.18966(11)0.35845(9)0.0222(5)
H16−0.2925950.1525090.3525640.027*
C17−0.2367(3)0.24238(12)0.39834(9)0.0222(5)
C18−0.1133(3)0.29833(12)0.40798(9)0.0226(5)
H18−0.1407780.3334040.4347330.027*
C191.2755(3)0.62196(11)0.43916(8)0.0208(4)
H19A1.3944350.6470610.4412080.031*
H19B1.2751210.5826770.4655190.031*
H19C1.1745120.6549110.4478810.031*
F1−0.39778(17)0.23897(7)0.42986(6)0.0314(3)
N10.6239(2)0.42797(9)0.32657(7)0.0171(4)
N20.6523(2)0.48466(9)0.43648(7)0.0150(3)
N30.3595(2)0.36129(9)0.35439(7)0.0169(4)
N40.3750(2)0.42620(9)0.45906(7)0.0182(4)
H40.3664510.4513800.4892450.022*
O11.24949(18)0.59398(8)0.38385(6)0.0202(3)

Source of material

(7-Fluoro-1,2,3,4-tetrahydroisoquinolin-1-yl)methanamine (1.8 g, 10 mmol), 2,3-dichloro-6-methoxyquinoxaline (1.8 g, 8 mmol) and K2CO3 (4.15 g, 0.03 mol) were dissolved in DMF (20 mL). The mixture was stirred at 120 °C under an atmosphere of dry N2 for 10 hours. After cooling to room temperature, the mixture was poured into 500 mL ice-water and filtered. The filter cake was washed with water (50 mL*3) and dried at 80 °C for 5 hours. Recrystallization from methylene dichloride (250 mL) gave a yellow solid (yield 37.6%); m.p. 234–238 °C; 1H NMR (600 MHz, DMSO) δ [ppm] 7.83 (d, J = 3.8 Hz, 1H), 7.41–7.33 (m, 2H), 7.28 (dd, J = 8.3, 6.0 Hz, 1H), 7.10 (d, J = 2.5 Hz, 1H), 6.90–6.78 (m, 2H), 4.94 (ddd, J = 12.5, 4.8, 2.4 Hz, 1H), 4.73 (dd, J = 9.6, 2.9 Hz, 1H), 4.03 (dt, J = 11.6, 3.9 Hz, 1H), 3.79 (s, 3H), 3.35 (s, 2H), 3.06–2.97 (m, 1H), 2.91 (dd, J = 12.8, 6.3 Hz, 1H); 13C NMR (151 MHz, DMSO) δ [ppm] 162.04, 160.45, 157.07, 144.42, 142.08, 138.74, 136.50, 131.60, 131.23, 126.29, 114.50, 114.36, 113.62, 113.12–112.99, 112.90, 105.79), 55.62, 53.19, 45.52, 27.93. Crystals were obtained by evaporation within 3 days at room temperature.

Experimental details

The structure was solved with the SHELXL program using Olex2 [2], [3]. All hydrogen atoms were placed in the calculated positions.

Comment

Quinoxaline and its derivatives exhibit diverse biological activities, such as anticancer, antibacterial, antiviral, anti-inflammatory [4], [5], [6]. Tetrazanbigen (TNBG) was a creatively designed and synthesized leading compound bearing the quinoxaline core and showing anticancer activity [7]. Recently, a series of TNBG monosubstituted derivatives were developed with better physical properties and biological effect compared to TNBG [8]. The title compound is a disubstituted TNBG derivative, which was synthesized from (7-fluoro-1,2,3,4-tetrahydroisoquinolin-1-yl)methanamine [9] and 2,3-dichloro-6-methoxyquinoxaline [10]. It showed excellent anticancer activities against hepatoma cells, colon cancer cells and lung cancer cells in vitro, which can be deduced that the introduction of an electron-withdraw fluorine group and an electron-donating methoxy group at position C-3 and position C-9 of TNBG (see the figure) could improve their anticancer activities. All bond lengths and angles are in the normal ranges [11]. In conclusion the title compound is a potential antitumor agent, which can be used for further development.

Award Identifier / Grant number: 30772595

Award Identifier / Grant number: 30371632

Award Identifier / Grant number: 30171070

Funding source: Program of Chongqing Medical and Pharmaceutical College

Award Identifier / Grant number: YGZ2018102

Funding statement: This work was supported by the National Natural Science Foundation of China (30772595, 30371632, 30171070) and Program of Chongqing Medical and Pharmaceutical College (YGZ2018102).

References

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Received: 2019-09-19
Accepted: 2019-11-12
Published Online: 2019-12-14
Published in Print: 2020-02-25

©2019 Yu Hang Chen et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  71. The crystal structure of [(tetra-μ2-2,6-difluorobenzoato-κ2O:O′)-bis-(2,6-difluorobenzoato-κ2O:O′)-bis-(1,10-phenanthroline-κ2N:N′)]dierbium(III) C66H34N4O12F12Er2
  72. Crystal structure of bis(3-chloro-N-(1-(pyrazin-2-yl)ethylidene)benzohydrazonato-k3N,N′,O)nickel(II), C26H20N8O2Cl2Ni
  73. Crystal structure of (E)-3-(3-(5-methyl-1-phenyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazol-4-yl)-1-phenylprop-2-en-1-one, C27H21N5O
  74. Crystal structure of (E)-N′-((4-aminophenyl)sulfonyl)-N,N-dimethylformimidamide, C9H13N3O2S
  75. Crystal structure of η6-p-cymene-iodido-(N-isopropyl-1-(pyridin-2-yl)methanimine-κ2N,N′)ruthenium(II) hexafluorophosphate(V), C19H26IN2F6Ru
  76. Crystal structure of 6-iodo-3-phenyl-2-propylquinazolin-4(3H)-one, C17H15IN2O
  77. Low temperature redetermination of the crystal structure of catena-poly[[tri-4-fluorobenzyltin(IV)]μ2-pyridine-4-carboxylato-κ2N:O], {C27H22F3NO2Sn}n
  78. Crystal structure of bis(2-propyl-1H-benzo[d]imidazol-3-ium) tetrachloridozincate(II), C10H13Cl4N2Zn
  79. The crystal structure of (Z)-3-hydrazono-5-nitroindolin-2-one – dimethyl sulfoxide (1/1), C8H6N4O3
  80. Crystal structure of bis-[N-(1-pyrazin-2-yl-ethylidene)-cyanoacetic acid-hydrazonato-κ3O,N,N′)]-zinc(II), C18H16N10O2Zn
  81. Crystal structure and photochromism of 1-(2,5-dimethyl-3-thienyl)-2-[2-methyl-5-(benzaldoxime)-3-thienyl] perfluorocyclopentene, C23H17F6NOS2
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