Home Physical Sciences The crystal structure of [(tetra-μ2-2,6-difluorobenzoato-κ2O:O′)-bis-(2,6-difluorobenzoato-κ2O:O′)-bis-(1,10-phenanthroline-κ2N:N′)]dierbium(III) C66H34N4O12F12Er2
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The crystal structure of [(tetra-μ2-2,6-difluorobenzoato-κ2O:O′)-bis-(2,6-difluorobenzoato-κ2O:O′)-bis-(1,10-phenanthroline-κ2N:N′)]dierbium(III) C66H34N4O12F12Er2

  • Zhong Yu-Fei , Wang Wen-Min , Peng Xiong-Xin , Bao Guang-Ming , Hu Chun-Yan and Yuan Hou-Qun ORCID logo EMAIL logo
Published/Copyright: December 3, 2019

Abstract

C66H34N4O12F12Er2, triclinic, P1̄ (no. 2), a = 11.8934(5) Å, b = 12.0041(4) Å, c = 12.4578(5) Å, α = 68.718(4)°, β = 64.205(4)°, γ = 87.053(3)°, V = 1480.09(12) Å3, Z = 1, Rgt(F) = 0.0326, wRref(F2) = 0.0626, T = 293(2) K.

CCDC no.: 1954675

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Pink rod
Size:0.15 × 0.10 × 0.08 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:2.92 mm−1
Diffractometer, scan mode:Xcalibur, φ and ω
θmax, completeness:29.3°, >99%
N(hkl)measured, N(hkl)unique, Rint:13931, 6822, 0.032
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 5935
N(param)refined:433
Programs:CrysAlisPRO [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Er10.58933(2)0.91167(2)0.62121(2)0.02413(5)
N10.5682(3)0.8862(3)0.8366(3)0.0330(7)
C10.4734(4)0.8152(3)0.9447(4)0.0413(10)
H10.4133430.7743900.9387560.050*
C20.4589(5)0.7986(4)1.0671(4)0.0517(12)
H20.3915300.7469391.1404920.062*
C30.5441(5)0.8585(4)1.0769(4)0.0603(14)
H30.5342540.8503181.1577940.072*
C40.6469(5)0.9326(4)0.9669(4)0.0498(11)
C50.6571(4)0.9443(3)0.8461(4)0.0365(9)
C60.7616(4)1.0177(3)0.7296(4)0.0373(9)
C70.8551(4)1.0778(4)0.7372(5)0.0478(11)
C80.8401(5)1.0664(5)0.8612(6)0.0697(16)
H40.9004921.1076320.8663770.084*
C90.7424(6)0.9986(5)0.9690(6)0.0714(16)
H50.7358690.9937651.0477380.086*
C100.9571(4)1.1454(4)0.6222(6)0.0628(14)
H61.0206281.1865840.6230350.075*
C110.9642(4)1.1513(4)0.5083(5)0.0599(13)
H71.0324991.1959000.4308680.072*
C120.8674(4)1.0894(3)0.5093(4)0.0462(10)
H80.8729421.0940430.4309610.055*
N20.7682(3)1.0246(2)0.6162(3)0.0344(7)
O10.5549(2)0.6915(2)0.7538(2)0.0349(6)
C130.6702(4)0.6931(3)0.7085(4)0.0342(9)
O20.7456(2)0.7852(2)0.6190(3)0.0408(7)
C140.7264(4)0.5842(3)0.7639(4)0.0419(10)
C150.8152(5)0.5311(4)0.6903(5)0.0566(12)
F10.8494(3)0.5757(2)0.5619(3)0.0811(9)
C160.8696(5)0.4332(4)0.7393(7)0.0769(17)
H90.9290280.3990260.6862740.092*
C170.8318(6)0.3886(4)0.8701(7)0.0788(18)
H100.8672650.3232050.9055830.095*
C180.7455(5)0.4364(4)0.9480(6)0.0672(15)
H110.7206130.4046351.0362280.081*
C190.6947(5)0.5336(3)0.8939(5)0.0504(11)
F20.6117(3)0.5841(2)0.9714(3)0.0729(8)
O30.5198(3)1.0909(2)0.6383(2)0.0407(7)
C200.4772(3)1.1747(3)0.5782(3)0.0296(8)
O40.4548(3)1.1805(2)0.4882(2)0.0438(7)
C210.4502(4)1.2808(3)0.6196(3)0.0326(9)
C220.3340(5)1.3187(4)0.6588(4)0.0492(11)
F30.2386(3)1.2561(3)0.6650(3)0.0791(9)
C230.3076(6)1.4163(4)0.6952(5)0.0728(16)
H120.2270221.4391370.7216450.087*
C240.4032(7)1.4785(4)0.6913(5)0.0763(19)
H130.3873751.5450680.7147240.092*
C250.5195(6)1.4457(4)0.6544(4)0.0642(15)
H140.5837581.4887640.6522720.077*
C260.5420(5)1.3468(3)0.6195(4)0.0469(11)
F40.6576(3)1.3140(2)0.5824(3)0.0768(9)
O50.3723(2)0.8650(2)0.7376(2)0.0390(6)
C270.2917(3)0.8878(3)0.6978(3)0.0282(8)
O60.3065(2)0.9603(2)0.5896(2)0.0394(6)
C280.1618(3)0.8201(3)0.7893(3)0.0319(8)
C290.1231(4)0.7158(4)0.7853(5)0.0550(12)
F50.2063(3)0.6790(2)0.6938(3)0.0930(12)
C300.0070(5)0.6513(4)0.8652(6)0.0795(18)
H15−0.0151880.5823810.8575190.095*
C31−0.0764(5)0.6906(5)0.9571(6)0.0804(17)
H16−0.1561090.6476641.0127780.097*
C32−0.0440(4)0.7924(5)0.9682(5)0.0688(15)
H17−0.1001630.8184231.0314690.083*
C330.0735(4)0.8547(4)0.8833(4)0.0444(10)
F60.1054(3)0.9579(3)0.8889(3)0.0745(9)

Source of material

A H2O/EtOH solution (12 mL, VH2O : VEtOH = 10 : 2) of 2,6-difluorobenzoic acid (50 mg, 0.30 mmol) and NaHCO3 (25 mg, 0.28 mmol) were added into Er(NO3)3⋅6H2O (65 mg, 0.14 mmol) which was dissolved in 8 mL EtOH. Then a 5 mL EtOH dissolving 1,10-phenanthroline (20 mg, 0.10 mmol) was added into the above solution. The solvent was partially evaporated and pink crystals were obtained after one week. Yield: 40 mg (35%) based on Er3+.

Experimental details

H atoms bound to C atoms were places in calculated positions and refined as riding on their parent atoms, with C—H = 0.93 Å (aromatic), C—H = 0.96 Å (methylene), C—H = 0.97 Å (ethylene), and with Uiso(H) = 1.5 Ueq(C) for methyl H atoms and 1.2 Ueq(C) for all other H atoms.

Comment

In the last two decades, lanthanide complexes have attracted much interest because of their diverse applications as functional materials such as molecular sensors, photo-catalysts and luminescent materials [4]. A key step in the construction of lanthanide complexes is to use appropriate organic ligands. O- and N-donor ligands are usually employed to assemble lanthanide complexes because of their various coordination modes. Among O-donor organic bridging ligands, benzoic acid and its derivatives are used to connect metal centers, yielding some fantastic structures of polynuclear clusters. Especially, the fluorine substituted organic molecules are good candidates for construction of functional lanthanide complexes because they are found to be more stable to oxidation and show thermal stability [5]. There are some reports about the use of 2-fluorobenzoate [6], [7], [8], 2,3-difluorobenzoate [9], 2,4-difluorobenzoate [10], [11], 2,5-difluorobenzoate [12], 2,3,4,5-tetrafluorobenzoate [13], [14], 2,3,5,6-tetrafluorobenzoate [15], and 2,3,4,5,6-pentafluorobenzoate [16] as ligands, however, there is only one example of 2,6-difluorobenzoate as ligand to coordinate with Ln(III) ions [17]. Herein, we select 2,6-difluorobenzoic acid to react with Er(III) ions and 1,10-phenanthroline to obtain a new complex {[Er(2,6-dfba)(phen)](μ2-2,6-dfba)2}2.

X-ray analysis showed that there are one Er(III) ion, one 1,10-phenanthroline ligand and three 2,6-difluorobenzoate anions in the asymmetric unit of the title complex. Each Er(III) ion is coordinated by six O atoms from three 2,6-difluorobenzoate ligands, and two N atoms from one 1,10-phenanthroline molecule. The 2,6-dfba ligands have two different coordination modes. The carboxylate group of O1—C13—O2 coordinates in a chelating mode, whereas the carboxylate groups of O3—C20—O4 and O5—C27—O6 adopt bridging mode. Two adjacent Er3+ ions are bridged by two 2,6-dfba ligands with the Er⋅⋅⋅Er distance of 4.3134(4) Å to form a dimeric unit. Each 1,10-phenanthroline molecule coordinates to one Er3+ ion using two N atoms. The distances of Er—O are in the range of 2.265(2))–2.497(2) Å. The distances of Er1—N1 and Er1—N2 are 2.486(3))–2.546(3) Å, respectively. The O—Er—O bond angles range from 53.83(8)° to 146.28(9)°. The phenanthroline molecule is a little distorted, the dihedral angle between N1C1C2C3C4C5 ring and C4C5C6C7C8C9 ring is 1.5(2)°, and it is 1.6(2)° between C4C5C6C7C8C9 ring and N2C6C7C10C11C12 ring. The carboxylate groups are almost twisted out of the benzene ring planes, and the dihedral angles between the carboxylate groups and their benzene rings are 54.1(3)°, 57.6(4)°, and 83.7(2)°, respectively.

Award Identifier / Grant number: 21461011

Award Identifier / Grant number: 31960720

Award Identifier / Grant number: 31560712

Award Identifier / Grant number: 20192ACBL21018

Award Identifier / Grant number: 20112BBF60023

Funding source: Education Department of Jiangxi Province

Award Identifier / Grant number: GJJ170245

Award Identifier / Grant number: GJJ170257

Funding statement: We gratefully acknowledge support by the National Nature Foundation of China [Nos. 21461011, 31960720, 31560712], the Natural Science Foundation of Jiangxi Province (Nos. 20192ACBL21018, 20112BBF60023), and the Education Department of Jiangxi Province (Nos. GJJ170245, GJJ170257).

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Received: 2019-10-18
Accepted: 2019-11-11
Published Online: 2019-12-03
Published in Print: 2020-02-25

©2019 Wang Wen-Min et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  42. Crystal structure of 4-dimethylamino-pyridin-1-ium uracil-1-acetate, C13H16N4O4
  43. Crystal structure of dimethylammonium 5-fluorouracil-1-acetate, C8H12N3O4F
  44. Crystal structure of bis(N′-((5-(ethoxycarbonyl)-1H-pyrrol-2-yl)methylene)-N-ethylcarbamohydrazonothioato-κ2N,O)nickel(II), C22H30N8O4S2Ni
  45. Crystal structure of chlorido-(η5-pentamethylcyclopentadienyl)-((bis-pyrazol-1-yl)methane-κ2N,N′) rhodium(III) hexafluorophosphate. (C17H23ClN4RhF6P)
  46. The crystal structure of 5-(benzofuran-2-carbonyl)-N-cyclohexyl-5,6-dihydrophenanthridine-6-carboxamide, C29H26N2O3
  47. The crystal structure of 2-oxo-2H-chromen-4-yl acetate, C11H8O4
  48. The crystal structure of 2-nitroisophthalic acid, C8H5NO6
  49. Crystal structure of 3-fluoro-9-methoxy-4b,5,14,15-tetrahydro-6H-isoquinolino [2′,1′:1,6]pyrazino[2,3-b]quinoxaline, C19H17FN4O
  50. Crystal structure of (4-fluorobenzyl-κC)(bis(2-hydroxyethyl) carbamodithioato-κ2S,S′)(2,2′-imino-diethanolato-κ3N,O,O′)tin(IV), C16H25FN2O4S2Sn
  51. Crystal structure and anti-inflammatory activity of (3E,5E)-1-((4-bromophenyl)sulfonyl)-3-(pyridin-4-ylmethylene)-5-(2-(trifluoromethyl)benzylidene)piperidin-4-one, C25H18BrF3N2O3S
  52. Crystal structure and anti-inflammatory activity of (3E,5E)-1-((4-chlorophenyl)sulfonyl)-3-(pyridin-4-ylmethylene)-5-(2-(trifluoromethyl)benzylidene)piperidin-4-one, C25H18ClF3N2O3S
  53. The crystal structure of 3-((1R,2S)-1-methylpyrrolidin-1-ium-2-yl)pyridin-1-ium tetrachloridomanganate(II), C10H16Cl4MnN2
  54. The crystal structure of 3-carboxy-5-methylpyridin-1-ium-2-carboxylate, C8H7NO4
  55. Crystal structure of bis(3-methoxy-N-(1-(pyridin-2-yl)ethylidene)benzohydrazonato κ3O,N,N′)zinc(II), C30H28N6O4Zn
  56. Crystal structure of dichlorido-(4,4′-dichloro-2,2′-bipyridine-κ2N,N′)platinum(II) — acetone (1/1), C13H12Cl4N2PtO
  57. Crystal structure of diethyl 6,12-bis(4-fluorophenyl)-2,10-dimethoxy-3,9-diphenyl-3,9-diazatetracyclo[6.4.0.02,7.04,11]dodecane-1,5-dicarboxylate, C42H42F2N2O6
  58. Synthesis and crystal structure of (1E,3E)-2-hydroxy-5-methylisophthalaldehyde O,O-di(2-((((E)-(2-hydroxynaphthalen-1-yl)methylene)amino)oxy)ethyl) dioxime, C35H32N4O7
  59. The crystal structure of 2-phenyl-4,6-bis(prop-2-yn-1-yloxy)-1,3,5-triazine, C15H11N3O2
  60. Crystal structure of 7-(2-{4-[(4-bromophenyl)methyl]piperazin-1-yl}ethoxy)-2H-chromen-2-one, C22H23BrN2O3
  61. Crystal structure of bis-[N-(3-ethyl-1-pyrazin-2-yl-ethylidene)-3-bromo-benzoic acid-hydrazonato-κ3O,N,N′)]-cadmium(II), C30H28N8O2Br2Cd
  62. Crystal structure of 6-(4-fluorophenyl)-4-methoxy-2H-pyran-2-one, C12H9FO3
  63. Crystal structure of 3-methyl-3-(2,4,5-trimethyl-3,6-dioxocyclohexa-1,4-dien-1-yl)butanoic acid, C14H18O4
  64. The crystal structure of 3-bromo-6-methoxy-2-methyl-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine, C13H19BBrNO3
  65. The crystal structure of 6-methyl-3,20-dioxo-19-norpregna-4,6-dien-17-yl acetate–2,4-dihydroxybenzoic acid (1/1), C30H36O8
  66. The crystal structure of (5-chloro-2-hydroxy-N-(4-methoxy-2-oxidobenzylidene)benzohydrazonato-κ3N,O,O′)-(pyridine-κ1N)copper(II), C20H16ClCuN3O4
  67. Crystal structure of (E)-2-cyano-N′-(1-(3-ethylpyrazin-2-yl)ethylidene)acetohydrazide, C11H3N5O
  68. Crystal structure of (2,7-dihexyl-9,9-dimethyl-9H-xanthene-4,5-diyl)bis(diphenylphosphane), C51H56OP2
  69. Crystal structure of 5-((bis(pyridin-2-ylmethyl)amino)methyl)quinolin-8-ol, C22H20N4O
  70. Crystal structure of 3-(2-(5-(4-fluorophenyl)-3-(4-methylphenyl)-4,5-dihydro-1H-pyrazol-1-yl)thiazol-4-yl)-2H-chromen-2-one, C28H20FN3O2S
  71. The crystal structure of [(tetra-μ2-2,6-difluorobenzoato-κ2O:O′)-bis-(2,6-difluorobenzoato-κ2O:O′)-bis-(1,10-phenanthroline-κ2N:N′)]dierbium(III) C66H34N4O12F12Er2
  72. Crystal structure of bis(3-chloro-N-(1-(pyrazin-2-yl)ethylidene)benzohydrazonato-k3N,N′,O)nickel(II), C26H20N8O2Cl2Ni
  73. Crystal structure of (E)-3-(3-(5-methyl-1-phenyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazol-4-yl)-1-phenylprop-2-en-1-one, C27H21N5O
  74. Crystal structure of (E)-N′-((4-aminophenyl)sulfonyl)-N,N-dimethylformimidamide, C9H13N3O2S
  75. Crystal structure of η6-p-cymene-iodido-(N-isopropyl-1-(pyridin-2-yl)methanimine-κ2N,N′)ruthenium(II) hexafluorophosphate(V), C19H26IN2F6Ru
  76. Crystal structure of 6-iodo-3-phenyl-2-propylquinazolin-4(3H)-one, C17H15IN2O
  77. Low temperature redetermination of the crystal structure of catena-poly[[tri-4-fluorobenzyltin(IV)]μ2-pyridine-4-carboxylato-κ2N:O], {C27H22F3NO2Sn}n
  78. Crystal structure of bis(2-propyl-1H-benzo[d]imidazol-3-ium) tetrachloridozincate(II), C10H13Cl4N2Zn
  79. The crystal structure of (Z)-3-hydrazono-5-nitroindolin-2-one – dimethyl sulfoxide (1/1), C8H6N4O3
  80. Crystal structure of bis-[N-(1-pyrazin-2-yl-ethylidene)-cyanoacetic acid-hydrazonato-κ3O,N,N′)]-zinc(II), C18H16N10O2Zn
  81. Crystal structure and photochromism of 1-(2,5-dimethyl-3-thienyl)-2-[2-methyl-5-(benzaldoxime)-3-thienyl] perfluorocyclopentene, C23H17F6NOS2
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