Home Crystal structure and anti-inflammatory activity of (3E,5E)-1-((4-bromophenyl)sulfonyl)-3-(pyridin-4-ylmethylene)-5-(2-(trifluoromethyl)benzylidene)piperidin-4-one, C25H18BrF3N2O3S
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Crystal structure and anti-inflammatory activity of (3E,5E)-1-((4-bromophenyl)sulfonyl)-3-(pyridin-4-ylmethylene)-5-(2-(trifluoromethyl)benzylidene)piperidin-4-one, C25H18BrF3N2O3S

  • Xian-Yong Bai , Qing-Guo Meng , Gui-Ge Hou ORCID logo and Yun Hou ORCID logo EMAIL logo
Published/Copyright: December 18, 2019

Abstract

C25H18BrF3N2O3S, monoclinic, P21/n (no. 14), a = 9.9295(11) Å, b = 21.755(2) Å, c = 10.2358(11) Å, β = 95.022(10)°, V = 2202.6(4) Å3, Z = 4, Rgt(F) = 0.0373, wRref(F2) = 0.0795, T = 100(1) K.

CCDC no.: 1868652

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.13 × 0.12 × 0.11 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:2.02 mm−1
Diffractometer, scan mode:SuperNova, ω
θmax, completeness:29.6°, >99%
N(hkl)measured, N(hkl)unique, Rint:12079, 5268, 0.033
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4330
N(param)refined:316
Programs:CrysAlisPRO [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Br10.94649(2)0.17973(2)0.23919(2)0.02123(8)
C10.6314(2)0.48747(10)0.2622(2)0.0189(5)
H1A0.7277000.4957260.2672760.023*
H1B0.5843720.5264520.2510110.023*
C20.5932(2)0.44730(10)0.1443(2)0.0166(5)
C30.4946(2)0.39606(10)0.1566(2)0.0169(5)
C40.4248(2)0.39128(10)0.2798(2)0.0157(5)
C50.4576(2)0.43918(10)0.3829(2)0.0175(5)
H5A0.3984470.4743020.3659710.021*
H5B0.4415150.4225850.4680750.021*
C60.6410(2)0.45364(10)0.0267(2)0.0187(5)
H60.6049420.426157−0.0365890.022*
C70.7400(2)0.49637(10)−0.0189(2)0.0188(5)
C80.7997(2)0.48110(11)−0.1330(2)0.0214(5)
H80.7733290.445593−0.1789420.026*
C90.8969(3)0.51825(12)−0.1773(2)0.0255(6)
H90.9354520.506655−0.2531100.031*
C100.8800(3)0.58616(11)−0.0110(2)0.0238(5)
H100.9067760.6225750.0312540.029*
C110.7805(2)0.55170(11)0.0408(2)0.0217(5)
H110.7410840.5652970.1146480.026*
C120.3408(2)0.34436(10)0.2906(2)0.0171(5)
H120.3353900.3157410.2228800.021*
C130.2558(2)0.33301(10)0.3982(2)0.0171(5)
C140.2337(2)0.27337(10)0.4443(2)0.0177(5)
C150.1478(2)0.26352(11)0.5412(2)0.0223(5)
H150.1330240.2237410.5700340.027*
C160.0837(2)0.31234(12)0.5957(2)0.0244(6)
H160.0258410.3054710.6608970.029*
C170.1057(2)0.37105(11)0.5533(2)0.0224(5)
H170.0636380.4040170.5909190.027*
C180.1897(2)0.38142(11)0.4553(2)0.0193(5)
H180.2025150.4213920.4267030.023*
C190.3092(2)0.22032(11)0.3935(2)0.0214(5)
C200.7680(2)0.35671(10)0.4060(2)0.0152(5)
C210.8570(2)0.36054(10)0.3094(2)0.0187(5)
H210.8822090.3987060.2786790.022*
C220.9082(2)0.30734(10)0.2590(2)0.0178(5)
H220.9676920.3093180.1938880.021*
C230.8701(2)0.25173(10)0.3062(2)0.0169(5)
C240.7802(2)0.24705(10)0.4012(2)0.0179(5)
H240.7551300.2086830.4310490.021*
C250.7277(2)0.30013(10)0.4517(2)0.0164(5)
H250.6664160.2978970.5152050.020*
F10.28225(14)0.21058(6)0.26410(12)0.0271(3)
F20.44372(13)0.22854(6)0.41137(13)0.0261(3)
F30.28415(16)0.16732(6)0.45231(14)0.0305(3)
N10.59818(19)0.45915(8)0.38476(17)0.0166(4)
N20.9401(2)0.57049(10)−0.11773(19)0.0270(5)
O10.47048(17)0.35949(7)0.06761(14)0.0217(4)
O20.82831(16)0.46570(7)0.48795(15)0.0231(4)
O30.65387(17)0.40849(7)0.59584(14)0.0214(4)
S20.71535(6)0.42498(2)0.47970(5)0.01684(13)

Source of material

The title compound was prepared in a two step protocol of a Claisen-Schmidt condensation followed by a N-sulfonylation. Firstly, 2-(trifluoromethyl)benzaldehyde (1.74 g, 10.0 mmol), 4-pyridinecarboxaldehyde (1.07 g, 10.0 mmol) and 4-piperidone hydrate hydrochloride (1.35 g, 10.0 mmol) were dissolved in dilute acetic acid (25 mL). This mixture was passed through by dry HCL gas for 30 min. After stirring at room temperature for 24 h (monitored by thin-layer chromatography (TLC)), the precipitate was collected and washed with cold acetone. The precipitates were added into 100 mL water, and the pH value was adjusted to 7 by aqueous Na2CO3 solution. The precipitates were filtered and washed by water. The crude product was purified on silica gel by column using methanol/petroleum ether/EtOAc (1:10:10, v/v/v) as the eluent to afford intermediates. Secondly, the intermediate (0.69 g, 2.0 mmol), and 4-bromobenzenesulfonyl chloride (0.46 g, 2.2 mmol) were dissolved in dichloromethane (50 mL). Two drops of pyridine were added. After stirring for 6 h at room temperature, the precipitate was collected, washed with water and recrystallized from dichloromethane/methanol (1:1, v/v) to get light yellow crystals of title compound.

The anti-inflammatory activities of title compound were evaluated by inhibition of LPS-induced NO secretion on mouse RAW264.7 macrophages. Pyrrolidine dithiocarbamate (PDTC) was used as a reference standard. When the concentration of the title compound was 6.0 μM, it had no significant toxicity on experimental RAW264.7 cells. Firstly, RAW264.7 cells were pretreated for 2.0 hours with 30 μM of PDTC or 6.0 μM of title compound, respectively. Secondly, the cells were treated with LPS (1.0 μg/mL) for 22 h, and then the collected culture media were centrifuged at 1000 rpm for 10 min. The expression levels of NO secretion in the media were determined by ELISA with an ELISA kit (eBioScience, San Diego, CA). The experiment was carried out in triplicate.

Experimental details

The H atoms were placed in idealized positions and treated as riding on their parent atoms, with d(C—H) = 0.97 Å (methylene), Uiso(H) = 1.2Ueq(C), and d(C—H) = 0.93 Å (aromatic), Uiso(H) = 1.2Ueq(C).

Comment

Curcumin analogues, like the 3,5-bis(arylidene)-4-piperidone (BAPs), contain two α,β-unsaturated keto groups, and have greater predilection or sequential interaction for bio-thiols in tumors rather than normal cells [4], [5]. Some BAPs with antitumor and anti-inflammatory properties better than curcumin [6] were reported by our group [7], [8], [9]. They involve some strong electron-withdrawing groups (-NO2, -CN, -CF3) and electron-donating substitutes (-NHAc, -OMe, -CMe3) improving antitumor and anti-inflammatory activity to different extent [10], [11], [12].

An asymmetric BAP is obtained by the use of a 4-pyridine substituent, and a trifluoromethylphenyl substituent, respectively (see the figure) [8]. Our interests lie in incorporation of different substituents on the end of N-phenylsulfonyl substituent, and find the desired and improved antitumor and anti-inflammatory activities.

Single-crystal structure analysis reveals that the title compound contains one drug molecule in the asymmetric unit (cf. the figure). Bond lengths and angles are all in the expected ranges. The pyridyl and arylidene moieties on both sides of central piperidone adopt the E stereochemistry [13, 14] . The dihedral angle between the mean plane of the pyridyl and the mean plane of the piperidone moiety is 12°, while the dihedral angle between the mean plane of the aryl and the mean plane of the piperidone moiety is 46°. In addition, the N-phenylsulfonyl substituents are going to stretch in the direction of the carbonyl group of the central piperidone. The title compound looks like an “organic clip” [15], [16]. The dihedral angle between the mean plane of the N-phenylsulfonyl and the mean plane of the piperidone ring is 42°.

In our study, the effect of title compound on pro-inflammatory cytokine (NO) production in mouse RAW264.7 cells induced by LPS was examined by ELISA. PDTC was as a reference standard. After treatment with PDTC, the expression rate for NO production in RAW264.7 cells was 68.32 ± 2.69%. For title compound, the expression rate of NO production could reach 55.39 ± 0.91%. The result showed that title compound displayed potential inhibitory effect on LPS-induced NO secretion than PDTC [8], [17].

Acknowledgements

This work was supported by the National Natural Science Foundation of China (no. 81601049) and Shandong Provincial Natural Science Foundation (No. ZR2019MB032).

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Received: 2019-09-21
Accepted: 2019-11-20
Published Online: 2019-12-18
Published in Print: 2020-02-25

©2019 Xian-Yong Bai et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  53. The crystal structure of 3-((1R,2S)-1-methylpyrrolidin-1-ium-2-yl)pyridin-1-ium tetrachloridomanganate(II), C10H16Cl4MnN2
  54. The crystal structure of 3-carboxy-5-methylpyridin-1-ium-2-carboxylate, C8H7NO4
  55. Crystal structure of bis(3-methoxy-N-(1-(pyridin-2-yl)ethylidene)benzohydrazonato κ3O,N,N′)zinc(II), C30H28N6O4Zn
  56. Crystal structure of dichlorido-(4,4′-dichloro-2,2′-bipyridine-κ2N,N′)platinum(II) — acetone (1/1), C13H12Cl4N2PtO
  57. Crystal structure of diethyl 6,12-bis(4-fluorophenyl)-2,10-dimethoxy-3,9-diphenyl-3,9-diazatetracyclo[6.4.0.02,7.04,11]dodecane-1,5-dicarboxylate, C42H42F2N2O6
  58. Synthesis and crystal structure of (1E,3E)-2-hydroxy-5-methylisophthalaldehyde O,O-di(2-((((E)-(2-hydroxynaphthalen-1-yl)methylene)amino)oxy)ethyl) dioxime, C35H32N4O7
  59. The crystal structure of 2-phenyl-4,6-bis(prop-2-yn-1-yloxy)-1,3,5-triazine, C15H11N3O2
  60. Crystal structure of 7-(2-{4-[(4-bromophenyl)methyl]piperazin-1-yl}ethoxy)-2H-chromen-2-one, C22H23BrN2O3
  61. Crystal structure of bis-[N-(3-ethyl-1-pyrazin-2-yl-ethylidene)-3-bromo-benzoic acid-hydrazonato-κ3O,N,N′)]-cadmium(II), C30H28N8O2Br2Cd
  62. Crystal structure of 6-(4-fluorophenyl)-4-methoxy-2H-pyran-2-one, C12H9FO3
  63. Crystal structure of 3-methyl-3-(2,4,5-trimethyl-3,6-dioxocyclohexa-1,4-dien-1-yl)butanoic acid, C14H18O4
  64. The crystal structure of 3-bromo-6-methoxy-2-methyl-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine, C13H19BBrNO3
  65. The crystal structure of 6-methyl-3,20-dioxo-19-norpregna-4,6-dien-17-yl acetate–2,4-dihydroxybenzoic acid (1/1), C30H36O8
  66. The crystal structure of (5-chloro-2-hydroxy-N-(4-methoxy-2-oxidobenzylidene)benzohydrazonato-κ3N,O,O′)-(pyridine-κ1N)copper(II), C20H16ClCuN3O4
  67. Crystal structure of (E)-2-cyano-N′-(1-(3-ethylpyrazin-2-yl)ethylidene)acetohydrazide, C11H3N5O
  68. Crystal structure of (2,7-dihexyl-9,9-dimethyl-9H-xanthene-4,5-diyl)bis(diphenylphosphane), C51H56OP2
  69. Crystal structure of 5-((bis(pyridin-2-ylmethyl)amino)methyl)quinolin-8-ol, C22H20N4O
  70. Crystal structure of 3-(2-(5-(4-fluorophenyl)-3-(4-methylphenyl)-4,5-dihydro-1H-pyrazol-1-yl)thiazol-4-yl)-2H-chromen-2-one, C28H20FN3O2S
  71. The crystal structure of [(tetra-μ2-2,6-difluorobenzoato-κ2O:O′)-bis-(2,6-difluorobenzoato-κ2O:O′)-bis-(1,10-phenanthroline-κ2N:N′)]dierbium(III) C66H34N4O12F12Er2
  72. Crystal structure of bis(3-chloro-N-(1-(pyrazin-2-yl)ethylidene)benzohydrazonato-k3N,N′,O)nickel(II), C26H20N8O2Cl2Ni
  73. Crystal structure of (E)-3-(3-(5-methyl-1-phenyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazol-4-yl)-1-phenylprop-2-en-1-one, C27H21N5O
  74. Crystal structure of (E)-N′-((4-aminophenyl)sulfonyl)-N,N-dimethylformimidamide, C9H13N3O2S
  75. Crystal structure of η6-p-cymene-iodido-(N-isopropyl-1-(pyridin-2-yl)methanimine-κ2N,N′)ruthenium(II) hexafluorophosphate(V), C19H26IN2F6Ru
  76. Crystal structure of 6-iodo-3-phenyl-2-propylquinazolin-4(3H)-one, C17H15IN2O
  77. Low temperature redetermination of the crystal structure of catena-poly[[tri-4-fluorobenzyltin(IV)]μ2-pyridine-4-carboxylato-κ2N:O], {C27H22F3NO2Sn}n
  78. Crystal structure of bis(2-propyl-1H-benzo[d]imidazol-3-ium) tetrachloridozincate(II), C10H13Cl4N2Zn
  79. The crystal structure of (Z)-3-hydrazono-5-nitroindolin-2-one – dimethyl sulfoxide (1/1), C8H6N4O3
  80. Crystal structure of bis-[N-(1-pyrazin-2-yl-ethylidene)-cyanoacetic acid-hydrazonato-κ3O,N,N′)]-zinc(II), C18H16N10O2Zn
  81. Crystal structure and photochromism of 1-(2,5-dimethyl-3-thienyl)-2-[2-methyl-5-(benzaldoxime)-3-thienyl] perfluorocyclopentene, C23H17F6NOS2
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