Home Crystal structure of ethyl 2-amino-4-(3,4-dimethylphenyl)-5-oxo-4H,5H-pyrano[3,2-c] chromene-3-carboxylate, C23H21NO5
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Crystal structure of ethyl 2-amino-4-(3,4-dimethylphenyl)-5-oxo-4H,5H-pyrano[3,2-c] chromene-3-carboxylate, C23H21NO5

  • Xue-Kun Liu , Xiao-Yu Geng , Meng Zhang , Bai-Jun Ye , Zhan Shi and Yan-Qiu Wang EMAIL logo
Published/Copyright: June 27, 2018

Abstract

C23H21NO5, monoclinic, P21/c (no. 14), a = 15.829(11) Å, b = 8.294(6) Å, c = 14.718(10) Å, β = 93.339(12)°, V = 1929(2) Å3, Z = 4, Rgt(F) = 0.073, wRref(F2) = 0.206, T = 296(2) K.

CCDC no.: 1848831

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.26 × 0.21 × 0.17 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.10 mm−1
Diffractometer, scan mode:Bruker APEX-II CCD, φ and ω
θmax, completeness:25.0°, >99%
N(hkl)measured, N(hkl)unique, Rint:9255, 3383, 0.178
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2167
N(param)refined:262
Programs:Olex2 [6], SHELX [7], Bruker [8]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
N10.21672(15)0.9825(3)−0.02116(14)0.0521(7)
H1A0.2310611.081108−0.0107020.063*
H1B0.2089410.948787−0.0762650.063*
O10.07671(11)0.4036(2)0.18123(11)0.0434(5)
O20.11407(13)0.5466(3)0.30259(11)0.0505(6)
O30.18553(12)0.7305(2)0.01495(11)0.0444(5)
O40.24960(13)1.0899(2)0.25719(12)0.0505(6)
O50.24809(13)1.1921(3)0.11570(13)0.0536(6)
C10.11396(15)0.4835(3)0.03219(16)0.0370(6)
C20.11103(17)0.4484(4)−0.06107(17)0.0436(7)
H20.1359400.518351−0.1010430.052*
C30.07167(18)0.3118(4)−0.09335(19)0.0496(8)
H30.0702190.289224−0.1553110.060*
C40.0339(2)0.2066(4)−0.0351(2)0.0533(8)
H40.0074870.113705−0.0579320.064*
C50.03537(18)0.2393(4)0.0567(2)0.0481(7)
H50.0090690.1703900.0961520.058*
C60.07615(16)0.3749(3)0.08905(17)0.0388(7)
C70.11722(16)0.5338(3)0.22093(16)0.0376(6)
C80.15953(15)0.6455(3)0.16413(15)0.0336(6)
C90.15324(15)0.6214(3)0.07370(16)0.0355(6)
C100.20659(16)0.8823(3)0.04783(17)0.0373(6)
C110.21622(15)0.9152(3)0.13827(16)0.0364(6)
C120.20980(16)0.7804(3)0.20706(16)0.0363(7)
H120.1795530.8214340.2585100.044*
C130.23834(16)1.0766(4)0.16574(18)0.0407(7)
C140.2795(2)1.2425(4)0.2942(2)0.0591(9)
H14A0.2317681.3082510.3096740.071*
H14B0.3102111.2998910.2491150.071*
C150.3354(2)1.2141(5)0.3760(3)0.0803(12)
H15A0.3551131.3155390.4003850.120*
H15B0.3045851.1582910.4206680.120*
H15C0.3828331.1499520.3602610.120*
C160.29669(15)0.7195(3)0.24325(16)0.0375(7)
C170.32843(17)0.7607(4)0.32888(18)0.0478(8)
H170.2953760.8230520.3655200.057*
C180.4083(2)0.7125(4)0.3627(2)0.0569(9)
C190.4383(3)0.7657(7)0.4576(2)0.1021(16)
H19A0.3953640.8301450.4833070.153*
H19B0.4495170.6724840.4951260.153*
H19C0.4891970.8280220.4546280.153*
C200.45718(18)0.6175(5)0.3087(2)0.0600(9)
C210.5442(2)0.5594(6)0.3410(3)0.0977(15)
H21A0.5572550.5972940.4018620.147*
H21B0.5453010.4437160.3403650.147*
H21C0.5852470.6003370.3014440.147*
C220.42543(19)0.5772(4)0.2229(2)0.0614(9)
H220.4581550.5147120.1859380.074*
C230.34607(17)0.6269(4)0.18995(19)0.0498(8)
H230.3260740.5975780.1316100.060*

Source of material

The title compound was prepared by a reported method. A mixture of 4-hydroxycoumarin (10 mmol), 3,4-dimethylbenzaldehyde (10 mmol), Ethyl cyanoacetate (10 mmol) and 4-(dimethylamino)pyridine (DMAP) (1 mmol) in ethanol (100 mL) was refluxed for 2−3 h and then cooled to room temperature. After filtering the precipitates, they were sequentially washed with ice-cooled water and ethanol and then dried under a vacuum.

Experimental details

H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93 or 0.96 Å and N—H = 0.86 Å with Uiso(H) = 1.2 times Ueq(C) and 1.2 times Ueq(N).

Comment

Natural products have a profound impact on both chemical biology and drug discovery, and the great structural diversity of natural products with various interesting biological characteristics has always provided medicinal chemists an important source of inspiration in their search for new molecular entities with pharmacological activity [1, 2] . Among them, coumarin derivatives are one important group of compounds covering a wide range of biological properties, including anti-oxidant, anti-inflammatory and anti-microbial as well as anticancer activities [3, 4] .

In the crystal structures of the title compound (Figure), the pyran moiety is slightly folded, whereas the adjacent coumarin moiety is basically planar. But the best planes of these units are essentially parallel to each other. However, the phenyl plane makes a torsion angle to the pyran moiety. The bond distances and the bond angles present in the title compound are comparable with those known related compounds. The structural features of the title compound are very similar to the previously reported compounds C22H19NO6, C21H16N2O7 and C27H21NO6 [5]. Compared with these three known coumarin derivatives, the most differences laid on their different functional groups, which are —OCH3, —NO2 and —OC6H5, respectively. While the title compound has two —CH3 fuctional groups bridging two carbon atoms from benzene ring.

References

Wang, Y.; Ba, Y.: Studies on the chemical constituents of Radix astragali and their inhibitory effect on HepG2 proliferation. Biomed. Res.-India 26 (2015) 393–398.Search in Google Scholar

Kahsai, A. W.; Cui, J.; Kaniskan, H. Ü.; Garner, P. P.; Fenteany, G.: Analogs of tetrahydroisoquinoline natural products that inhibit cell migration and target galectin-3 outside of its carbohydrate-binding site. J. Biol. Chem. 283 (2008) 24534–24545.10.1074/jbc.M800006200Search in Google Scholar PubMed PubMed Central

Wang, X. K.; Li, P. W.; Yan, B.; Wang, B.-J.: 1,4-Dihydropyridine derivatives: synthesis and anti-hepatoma cancer activity. Lat. Am. J. Pharm. 35 (2016) 1692–1695.10.15199/62.2017.4.34Search in Google Scholar

Gündüz, M. G.; Celebi, S.; Kaygisiz, B.; Safak, C.: 7-Substituted hexahydroquinoline derivatives and their calcium channel modulator effects. Lat. Am. J. Pharm. 28 (2009) 922–926.Search in Google Scholar

Chen, H. L., Yang, G. L., Liao, X. Y., Bao, Z. Y.; Zhang, X. R.: Novel coumarins from traditional chinese medicine: synthesis and anti-lung cancer activity. Lat. Am. J. Pharm. 37 (2018) 384–387.Search in Google Scholar

Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Crystallogr. 42 (2009) 339–341.10.1107/S0021889808042726Search in Google Scholar

Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central

Bruker. APEX2. Bruker AXS Inc., Madison, WI, USA (2008).Search in Google Scholar

Received: 2018-03-13
Accepted: 2018-06-12
Published Online: 2018-06-27
Published in Print: 2018-08-28

©2018 Xue-Kun Liu et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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  1. Cover and Frontmatter
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  10. Crystal structure of (E)-1-(4-(((E)-2-hydroxy-3-methoxybenzylidene)amino)phenyl)ethan-1-one oxime, C16H16N2O3
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  18. Crystal structure of diaqua-(N-(1-(pyrazin-2-yl)ethylidene)nicotinohydrazonato-κ3N,N′,O)-bis(nitrato-κ2O,O′)samarium(III), C12H14N7O9Sm
  19. Crystal structure of hexaaqua-{(E)-N′-(1-(pyrazin-2-yl)ethylidene)isonicotinohydrazide-κ3N,N′,O}praseodym(III) trichloride monohydrate, C12H25Cl3N5O8Pr
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  28. Crystal structure of ethyl 4-(3-cyanophenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydroquinoline-3-carboxylate, C22H24N2O3
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  68. Crystal structure of ethyl 2-amino-4-(3-methoxyphenyl)-5-oxo-4H,5H-pyrano[3,2-c]chromene-3-carboxylate, C22H19NO6
  69. Crystal structure of methyl 4-(3,5-ditrifluoromethylphenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydroquinoline-3-carboxylate — water (2/1), C22H21F6NO3
  70. Crystal structure of 2-(4-bromophenyl)-2,3-dihydro-1H-perimidine, C17H13BrN2
  71. Crystal structure of (5-ethyl-2-(4-methoxyphenyl)-1,3-dioxan-5-yl)methanol, C14H20O4
  72. Crystal structure of (E)-N-(4-bromo-2-(1-(hydroxyimino)ethyl)phenyl)benzamide, C15H13BrN2O2
  73. Crystal structure of caffeinium triiodide – caffeine (1/1), C16H21I3N8O4
  74. Crystal structure of methyl 2-methyl-4-(3-methoxyphenyl)-5-oxo-1,4,5,6,7,8-hexahydroquinoline-3-carboxylate, C19H21NO4
  75. Crystal structure of (E)-3-(3,5-di-tert-butyl-4-hydroxyphenyl)-1-phenylprop-2-en-1-one, C23H28O2
  76. Crystal structure of 1,4-bis(2-azidoethyl)piperazine-1,4-diium dichloride, C8H18N8Cl2
  77. The crystal structure of dichlorido-(1,3-bis(2,6-dimethylphenyl)-1H-imidazol-2(3H)-ylidene)-(morpholine-κ1N)palladium(II), C23H29Cl2N3OPd(II)
  78. The crystal structure of 1-((5-chloro-3-methyl-1-phenyl-1H-pyrazole-4-yl)methyl)-1,3-diphenylurea, C24H21ClN4O
  79. Crystal structure of 6-(2-bromoacetamido)tetrahydro-2H-pyran-2,3,4,5-Tetrayl tetraacetate, C16H22BrNO10
  80. Crystal structure of 5-methylpyrazine-2-carbohydrazide, C6H8N4O
  81. Crystal structure of catena-poly[(μ2-5-(tert-butyl)isophthalato-κ4O,O′:O′′,O′′′)(-4′-(pyridin-4-yl)-2,2′:6′,2′′-terpyridine-κ3N,N′,N′′)manganese(II)], C32H28N4O5Mn
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