Startseite Crystal structure of 4-(trifluoromethyl)-7-coumarinyl trifluoromethanesulfonate C11H4F6O5S
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Crystal structure of 4-(trifluoromethyl)-7-coumarinyl trifluoromethanesulfonate C11H4F6O5S

  • Xiaozhuan Qin , Yuling Li EMAIL logo , Ruixia Song , Linna Wang und Bobo Ye
Veröffentlicht/Copyright: 24. April 2025

Abstract

C11H4F6O5S, triclinic, P1̄ (no. 2), a = 8.7997(4) Å, b = 12.6338(4) Å, c = 12.9238(5) Å, α = 109.674(3)°, β = 95.183(3)°, γ = 98.301(3)°; V = 1323.77(9) Å3, Z = 4, Rgt(F) = 0.0449, wRref(F2) = 0.1294, T = 298 K.

CCDC no.: 2425075

1 Source of material

The title compound, 4-(trifluoromethyl)-7-coumarinyl trifluoromethanesulfonate, was synthesized according to the literature method with a slight modification. 1 , 2 7-Hydroxy-4-(trifluoromethyl)coumarin (0.81 g, 3.5 mmol) was dissolved in pyridine (30 mL) and the solution was cooled to 0 °C. Trifuoromethanesulfonic anhydride (0.85 mL, 3.85 mmol) was added dropwisely to the above cooled solution and stirred for 30 min. Then, the mixture was warmed to room temperature and stirred for another 6 h. The reaction progress was monitored by thin—layer chromatography (TLC). When the starting 7-hydroxy-4-(trifluoromethyl)coumarin disappeared completely on the TLC, the reaction was diluted by adding acetic ether (30 mL). The resulting organic phase was washed with the saturated NaCl (3 × 30 mL), 5 % aqueous HCl (5 × 30 mL), and saturated NaCl (2 × 30 mL) successively. The collected organic phase was dried over anhydrous Na2SO4. The solvent was removed, yielding the crude product. The crude product was purified by flash column chromatography on silica gel (200–300 mesh), using dichloromethane and hexane (1:1) as the eluent to give the title compound as a yellowish solid. The purified 4-(trifluoromethyl)-7-coumarinyl trifluoromethanesulfonate (25 mg) was dissolved in a mixed solvent 8 mL (dichloromethane/ethanol, 1:1) in a 10 mL vial with parafilm sealed. Several holes (3–5) were made with a needle on the parafilm cover, allowing a slow evaporation of the mixed solvent. After several days evaporation of the solvent slowly at room temperature, regular shaped crystals formed at the bottom of the vial. Suitable crystals were selected for X-ray diffraction and the data was collected for structure solving.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.20 × 0.17 × 0.15 mm
Wavelength: Cu Kα radiation (1.54184 Å)
μ: 3.16 mm−1
Diffractometer, scan mode: Rigaku SuperNova, ω scans
θmax, completeness: 71.4°, 100 %
N(hkl)measured, N(hkl)unique, Rint: 9366, 5022, 0.024
Criterion for Iobs, N(hkl)gt: Iobs > 2σ(Iobs), 4,390
N(param)refined: 472
Programs: Rigaku, 3 Shelx, 4 , 5 , 6 Olex2 7 , Diamond 8

2 Experimental details

The structure of the 4-(trifluoromethyl)-7-coumarinyl trifluoromethanesulfonate was solved using ShelXT and refined by ShelXL through the Olex2 interface. 4 , 5 Hydrogen atoms attached to C atoms were placed geometrically and refined using a riding model approximation, with d (C–H) = 0.93 Å(–CH). Uiso(H) = 1.2 Ueq(C) for CH. 4 There are two trifluoromethyl groups in the dye structure. The trifluoromethyl attaching to 4-position of coumarin is ordered. However, another one in 7-position of coumarin trifluoromethanesulfonate part is disordered, ascribing to its free rotation around the axis of C11–S2/C21–S1. Therefore, they are splitted into two parts around the axis of C11–S2/C21–S1, respectively. For C11/F4/F5/F6, the two parts accounted for 87 % and 13 %, respectively. The length of three C–F (F4/F5/F6) bond were restricted to be identical by SADI command. At the same time, the distances between F4/F5/F6 also was identically restrained by SADI instruction. RIGU command was used to restrain the whole group with the uncertainty 0.001. Furthermore, ISOR command was applied to F5 for its reasonalbe thermal ellipsoids. In case of another disordered trifluoromethyl (C11/F4/F5/F6), SAME instruction was used to the splitted two models with 48 % and 52 %, respectively. Each part was constrained with SIMU instruction. Specifically, F11 was also restricted by ISOR with 0.005 uncertainty for a reasonalbe thermal ellipsoid. The molecular graphics were drawn using the software DIAMOND with 50 % probability ellipsoids in Figure 1. 8 Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

3 Comment

The title compound, 4-(trifluoromethyl)-7-coumarinyl trifluoromethanesulfonate, is a coumarin-containing fluorescent dye, which can emit bright blue fluorescence in the crystal state when irradiated with 365 nm UV light. Therefore, many fluorescent dyes with the build-in coumarin moiety were configured aiming for practical application in chemosenor, bioligical imaging, and dye-sensitized solar cells, etc. 9 , 10 , 11 , 12 , 13 In the title dye structure, there exists trifluoromethyl and trifluoromethanesulfonate serving as electron acceptor and donor, respectively. The build-in intramolecular electron “push-pull” effect, together with the π system of coumain, configure the specifically optical character of the title compound. Based on this molecule designing strategy, various highly fluorescent dyes can be developed toward the application in display device fabrication. 14 , 15 , 16

In the title crystal structure, the asymmetric unit contanins two crystallographically independent molecules. Both the bond lengths and the angles are in the expected ranges. The coumarin part (C1/C2/C3/C4/C5/C6/C7/C8/C9/O1/O2, C12/C13/C14/C15/C16/C17/C18/C19/C20/O7/O6) is planar with the root mean square error (RMSD) in distance estimated to be 0.020 Å. The trifluoromethyl (C10/F1/F2/F3 and C22/F7/F8/F9) attached to C3/C14 is the rigid framework of coumarin. And therefore, both the two trifluoromethyl are ordered in the crystal lattice, which is different from those attached to S1/S2. Due to the twisted character of sulfonate, the two trifluoromethyl (C11/F10/F11/F12 and C21/F4/F5/F6) are prone to be disordered. The bond lengths of S1–O3/S2–O8 are determined to be 1.574 and 1.569 Å, respectively, having the character of C–O single bonds. Therefore, the O3/O8 are also coplanar with the corresponding coumarin ring and donate their electrons to the coumarin. Vice versa, the C1–O2/C12–O6 are typical C–O double with the bond lengths 1.199 and 1.192 Å, which facilitates the electron withdrawing from the coumarin. Totally, the electron donor (O3/O8) and the electron acceptor (carbonyl group and trifluoromethyl), together with the π system of coumarin, jointly configured the intramolecular electron “push-pull” effect in a fluorescent dye system. By the construction of intramolecular electron “push-pull” system, specifically optical photophysical properties can be effectively developed. 17 , 18 , 19 , 20 The adjacent parallel molecules are packed by strong ππ interaction. The distance between the two coumarin planes (C1/C2/C3/C4/C5/C6/C7/C8/C9/O1/O2i1, C12/C13/C14/C15/C16/C17/C18/C19/C20/O7/O6i1, i1: x, y, z) is determined to be 3.543 Å and the parallel shift is 0.849 Å, corresponding to the parallel-displaced geometry. 21 Typical intermolecular C–H⋯O interactions are also established. Between the adjacent nonparallel molecules, six hydrogen bonds are found (C8–H8⋯O6i2, C19–H19⋯O2i3, C17–H17⋯O10i4, C6–H6⋯O9i2, C8–H8⋯O5i2, and C13–H13⋯O4i2, i2: −x, −y, 1−z; i3: −1−x, 1−y, 2−z; i4: 1−x, 1−y, 1−z) with the C⋯O contacts ranging from 3.262 to 3.689 Å, C–H⋯O angle ranging from 121.7 to 159.2°. The distances of C⋯O are well inside the interval of 3.0–4.0 Å and quoted by Desiraju. 22 And C–H⋯O angles are also in agreement with the above mentioned survey. 22 , 23 In addition, the fluoride atoms are also involved in the hydrogen bond construction. The typical H⋯F contacts include (C6–H6⋯F4i5, C2–H2⋯F12i6, C20–H20⋯F11i3, i5: −x, 1−y, 1−z; i6: 1−x, 1−y, 2−z). The H⋯F distances range from 3.2.841 to 2.939 Å. The hydrogen bond configured in the crystal lattice is significant to modify the emission behavior of the fluorescent dyes. 24 , 25 , 26 , 27 , 28 Therefore, reasonable design various inter- and/or intra-molecular hydrogen bonds into the crystal lattice is an effective way to control the ratio between the radiative and nonradiative channels. 29 , 30 Weaker intramolecular interactions is easy to generate highly emissive crystals. Stronger interactions can open more nonradiative channels in the excited states. 31 , 32 , 33 , 34

The driving force that packing the dye molecule parallel to each other along the axis c is based on the stronger ππ interaction. However, the parallel molecules are cohesive by the hydrogen bonds. The weaker intramolecular interactions derived from H–O/H–F contacts determine the highly emissive character of the title compound in crystal state. 35 With the establishing of the T-shaped ππ interaction between the parallel coumarin ring, a tight regular packing can be avoided and thus avoiding significant fluorescence quench. 36 , 37 , 38 , 39 , 40 Once the nonradiative channel of excited dye molecules is inhibited to a large extent, the proportion of emission channel will become prominent. 41 , 42 , 43 , 44 To the title compound, the molecular packing model, together with its intramolecular electron “push-pull” system, constructed the unique fluorescence emitting property in solid and crystal state. 45 , 46 , 47 In conclusion, the molecules are staggered layer by layer along with the axis a due to the ππ interaction. The hydrogen bonds based on H⋯O and H⋯F joint the layers side by side.


Corresponding author: Yuling Li, School of Materials and Chemical Engineering, Zhengzhou University of Technology, Zhengzhou, Henan, 450044, P.R. China, E-mail:

Acknowledgments

X. Z. Qin appreciates the finical supporting by the Basic Research and Applied Basic Research Project of Zhengzhou Science and Technology Bureau (No. zkz202204), Open Laboratory Project of Zhengzhou University of Technology (2024). The authors gratefully thanks Prof. Xiaochuan Li (HenanNormal University) for his assistance with the lab facilities supportation/chemical purification, single crystal X-ray diffraction data acquisition and providing his expertise on crystal structure solving.

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Received: 2025-03-01
Accepted: 2025-04-10
Published Online: 2025-04-24
Published in Print: 2025-06-26

© 2025 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  8. The crystal structure of 1-methyl-3-(N-methylnitrous amide–N-methylene) imidazolidine-2,4,5-trione
  9. Crystal structure of N-((3-cyano-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(2,2,2-trifluoroacetyl)-1H-pyrazol-5-yl)carbamoyl)-2,6-difluorobenzamide, C20H7Cl2F8N5O3S
  10. Crystal structure of 5-(2,2-difluoropropyl)-5-methylbenzo[4,5]imidazo[2,1-a] isoquinolin-6(5H)-one, C20H18F2N2O
  11. The crystal structure of N′,N″-[1,2-bis(4-chlorophenyl)ethane-1,2-diylidene]bis(furan-2- carbohydrazide), C24H16Cl2N4O4
  12. Crystal structure of [(4-bromobenzyl)triphenylphosphonium] tetrabromoantimony(III), [C25H21BrP]+[SbBr4]
  13. Crystal structure of [(4-bromobenzyl)triphenylphosphonium] tetrabromidoindium(III), [C25H21BrP]+[InBr4]
  14. The crystal structure of 4-carboxy-2-oxobutan-1-aminium chloride, C5H10ClNO3
  15. Crystal structure of (4-(4-chlorophenyl)-1H-pyrrole-3-carbonyl)ferrocene, C21H16ClFeNO
  16. The crystal structure of dichlorido(η6-p-cymene)(triphenylarsine)ruthenium(II), C28H29AsCl2Ru
  17. Crystal structure of (Z)-2-hydroxy-N′-(1-(o-tolyl)ethylidene)benzohydrazide, C16H16N2O2
  18. The crystal structure of 10-(1-bromoethyl)-14-(bromomethyl)dibenzo[a, c]acridine, C24H17NBr2
  19. Synthesis and crystal structure of 6-methoxy-7-[(4-methoxyphenyl)methoxy]-2H-1-benzopyran-2-one, C18H16O5
  20. Synthesis and crystal structure of ethyl 4-((4-trifluoromethylbenzyl)amino)benzo, C17H16F3NO2
  21. The crystal structure of (Z)-2-(tert-butyl)-6-(7-(tert-butyl)-5-methylbenzo[d][1,3]oxathiol-2-ylidene)-4-methylcyclohexa-2,4-dien-1-one, C23H28O2S
  22. The crystal structure of (R)-2-aminobutanamide hydrochloride, C4H11ClN2O
  23. Crystal structure of bromido[hydridotris(3-tert-butyl-5-isopropylpyrazolyl)borato-κ3 N,N′,N″]copper(II), C30H52BBrCuN6
  24. Crystal structure of chlorido{hydridotris[3-mesityl-5-methyl-1H-pyrazol-1-yl-κN3]borato}-copper(II) dichloromethane monosolvate
  25. Crystal structure of 4-[3,5-bis(propan-2-yl)-1H-pyrazol-4-yl]pyridine, C14H19N3
  26. Crystal structure of ((4-(4-bromophenyl)-1H-pyrrol-3-yl)methyl)ferrocene, C21H16BrFeNO
  27. Crystal structure of [(4-chlorobenzyl)triphenylphosphonium] dichloridocopper(I), {[C25H21ClP]+[CuCl2]}n
  28. The crystal structure of {Cu(2,9-diisopropyl-4,7-diphenyl-1,10-phenanthroline)[4,5-bis(diphenylphosphino)-9,9-dimethylxanthene]}+ PF6·1.5(EtOAC)
  29. Crystal structure of 3,5-bis(t-butyl)-1H-pyrazol-4-amine, C11H21N3
  30. Crystal structure of [(2,4-dichlorobenzyl)triphenylphosphonium] trichloridocopper(II), [C25H20Cl2P]+[CuCl3]
  31. The crystal structure of dipotassium sulfide, K2S
  32. Crystal structure of (4-(4-methoxyphenyl)-1H-pyrrole-3-carbonyl)ferrocene, C22H19FeNO2
  33. Crystal structure of (E)-6-(4-methylpiperazin-1-yl)-2-(4-(trifluoromethyl)benzylidene)-3, 4-dihydronaphthalen-1(2H)-one, C23H23F3N2O
  34. Crystal structure of (E)-6-morpholino-2-(4-(trifluoromethyl)benzylidene)-3,4-dihydronaphthalen-1(2H)-one, C22H20F3NO2
  35. Crystal structure of Ce9Ir37Ge25
  36. The crystal structure of ethyl 6-(2-nitrophenyl)imidazo[2,1-b]thiazole-3-carboxylate, C14H11N3O4S
  37. Crystal structure of (4-(4-isopropylphenyl)-1H-pyrrol-3-yl)(ferrocenyl)methanone, C24H23FeNO
  38. Crystal structure of bis(methylammonium) tetrathiotungstate(VI), (CH3NH3)2[WS4]
  39. Crystal structure of 6,11-dihydro-12H-benzo[e]indeno[1,2-b]oxepin-12-one, C17H12O2
  40. Crystal structure of 3-[(4-phenylpiperidin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4- oxadiazole-2-thione, C18H19N3OS2
  41. Crystal structure of N-isopropyl-1,8-naphthalimide C15H13NO2
  42. TiNiSi-type EuPdBi
  43. Crystal structure of 1-(p-tolylphenyl)-4-(2-thienoyl)-3-methyl-1H-pyrazol-5-ol, C16H14N2O2S
  44. The crystal structure of 3-(3-carboxypropyl)-2-nitro-1H-pyrrole 1-oxide, C7H9N3O5
  45. The crystal structure of tetraaqua-bis(2-(2-methyl-5-nitro-1H-imidazol-1-yl)acetato-k2O:N)-tetrakis(2-(2-methyl-5-nitro-1H-imidazol-1-yl)acetato-k1N)trizinc(II) hexahydrate C36H52N18O32Zn3
  46. The crystal structure of 4-(3-carboxy-1-ethyl-6-fluoro-4-oxo-1,4-dihydroquinolin-7-yl)piperazin-1-ium 4-hydroxy-3,5-dimethoxybenzoate monohydrate, C25H30FN3O9
  47. Crystal structure of bis(DL-1-carboxy-2-(1H-indol-3-yl)ethan-1-aminium) oxalate — acetic acid (1/2)
  48. Crystal structure of methyl (E)-4-((4-methylphenyl)sulfonamido)but-2-enoate, C12H15NO4S
  49. The crystal structure of actarit, C10H11NO3
  50. The crystal structure of bicyclol, C19H18O9
  51. The crystal structure of topiroxostat, C13H8N6
  52. Crystal structure of 2,2-dichloro-N-methyl-N-(4-p-tolylthiazol-2-yl)acetamide, C13H12Cl2N2OS
  53. Crystal structure of 4-(trifluoromethyl)-7-coumarinyl trifluoromethanesulfonate C11H4F6O5S
  54. Crystal structure of (1,4,7,10,13,16-hexaoxacyclooctadecane-κ6O6)-((Z)-N,N′-bis(2-(dimethylamino)phenyl)carbamimidato-κ1N)potassium(I)
  55. Crystal structure of (Z)-2-(5-((4-(dimethylamino)naphthalen-1-yl)methylene)-4-oxo-2-thioxothiazolidin-3-yl)acetic acid, C18H16N2O3S2
  56. Crystal structure of (4-fluorobenzyl)triphenylphosphonium bromide, C25H21BrFP
  57. The crystal structure of dichlorido-[6-(pyridin-2-yl)phenanthridine-κ2N, N′]zinc(II)-chloroform (1/1), C19H13N2ZnCl5
  58. Crystal structure of (E)-(3-(2,4-dichlorophenyl)acryloyl)ferrocene, C19H14Cl2FeO
  59. The crystal structure of (E)-7-chloro-1-cyclopropyl-6-fluoro-3-((2-hydroxybenzylidene)amino)quinolin-4(1H)-one, C19H14ClFN2O2
  60. Crystal structure of 2-bromo-11-(((fluoromethyl)sulfonyl)methyl)-6-methyl-6,11-dihydrodibenzo[c,f][1,2]thiazepine 5,5-dioxide, C16H13BrFNO4S2
  61. Crystal structure of 2-chloro-11-(((fluoromethyl)sulfonyl)methyl)-6-methyl-6,11-dihydrodibenzo[c,f][1,2]thiazepine 5,5-dioxide, C16H13ClFNO4S2
  62. Crystal structure of 5-(2,2-difluoropropyl)-5-methyl-6-oxo-5,6-dihydrobenzo[4,5]imidazo[2,1-a]isoquinoline-3-carbonitrile, C20H15F2N3O
Heruntergeladen am 18.11.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2025-0108/html
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