Home Physical Sciences The crystal structure of 2-(2,3-dimethoxyphenyl)-3-hydroxy-4H-chromen-4-one, C17H14O5
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The crystal structure of 2-(2,3-dimethoxyphenyl)-3-hydroxy-4H-chromen-4-one, C17H14O5

  • Dongsoo Koh ORCID logo EMAIL logo
Published/Copyright: April 9, 2020

Abstract

C17H14O5, monoclinic, P21/c (no. 14), a = 11.7580(7) Å, b = 8.3745(5) Å, c = 13.8754(8) Å, β = 92.622(2)°, V = 1364.84(14) Å3, Z = 4, Rgt(F) = 0.0423, wRref(F2) = 0.1163, T = 223(2) K.

CCDC no.: 1989319

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.47 × 0.22 × 0.12 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.11 mm−1
Diffractometer, scan mode:PHOTON II M14, φ and ω
θmax, completeness:28.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:43522, 3399, 0.043
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2778
N(param)refined:202
Programs:Bruker [1], SHELX [2], [3], Olex2 [4], PublCIF [5]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O11.04390(9)0.36789(13)0.42187(8)0.0388(3)
O20.78355(8)0.04616(11)0.40086(7)0.0330(2)
O30.82309(9)0.46797(12)0.44307(9)0.0391(3)
O40.62705(9)0.37486(13)0.28440(7)0.0371(3)
O50.40483(9)0.44123(16)0.31296(8)0.0460(3)
C10.96558(11)0.26886(16)0.41232(10)0.0292(3)
C20.84826(12)0.31261(16)0.42434(10)0.0297(3)
C30.76345(11)0.20401(16)0.41863(10)0.0293(3)
C40.89189(12)−0.00300(17)0.38429(10)0.0302(3)
C50.90545(14)−0.16504(18)0.36333(11)0.0373(3)
H50.8429−0.23490.36220.045*
C61.01223(15)−0.21980(19)0.34439(11)0.0413(4)
H61.0226−0.32850.33020.050*
C71.10545(14)−0.11684(19)0.34581(12)0.0412(4)
H71.1777−0.15580.33150.049*
C81.09156(13)0.04185(18)0.36821(11)0.0361(3)
H81.15480.11060.37020.043*
C90.98335(12)0.10186(16)0.38815(9)0.0290(3)
H30.87730.50980.47400.059*
C100.64198(11)0.23658(16)0.43384(10)0.0301(3)
C110.57807(12)0.32752(17)0.36779(10)0.0303(3)
C120.46314(12)0.35873(18)0.38392(11)0.0338(3)
C130.41586(13)0.30197(19)0.46729(12)0.0379(3)
H130.33980.32600.47960.045*
C140.48036(14)0.2102(2)0.53228(12)0.0413(4)
H140.44750.17090.58810.050*
C150.59249(13)0.17609(19)0.51565(12)0.0379(3)
H150.63550.11210.55940.045*
C160.62713(16)0.5434(2)0.26579(13)0.0467(4)
H16A0.54930.58190.26010.070*
H16B0.66450.56410.20610.070*
H16C0.66770.59810.31850.070*
C170.29439(13)0.4985(2)0.33305(13)0.0463(4)
H17A0.24170.40940.33430.069*
H17B0.26890.57340.28330.069*
H17C0.29730.55150.39520.069*

Source of material

Flavonol was obtained by an oxidative cyclization reaction of an ortho-hydroxy chalcone intermediate with H2O2 in alkaline methanol medium. Equimolar amounts of 1-(2-hydroxyphenyl)ethanone (20 mmol, 2.72 g) and 2,3-dimethoxy-benzaldehyde (20 mmol, 3.32 g) were dissolved in 70 mL of ethanol and the temperature was adjusted to around 2 °C in an ice-bath. To the cooled reaction mixture was added 5 mL of 50% (w/v) aq. KOH solution and the whole mixture was stirred at room temperature for 18 h. After completion of the reaction (monitored by thin-layer chromatography), this mixture was poured into ice water (100 mL) and the resulting solution was acidified with 6 N HCl solution until pH = 3 to produce a solid compound of a chalcone intermediate, which was used for next oxidative cyclization reaction. The intermediate ((E)-3-(2,3-dimethoxyphenyl)-1-(2-hydroxyphenyl)prop-2-en-1-one) (2 mmol, 568 mg) was dissolved in 15 mL of methanol and 10 mL of THF. The reaction mixture was cooled in an ice bath and a cold solution of 16% sodium hydroxide (3 mL) was added with stirring. After 10 min, 5 mL of 35% H2O2 was added to the mixture and was stirred for 8 h. After completion of reaction, the reaction mixture was acidified with 3 N HCl (pH = 4). The yellow precipitate obtained was filtered and washed with ethanol to give the title compound. Recrystallization in the ethanol gave crystals used in this X-ray diffraction study.

Experimental details

Data collections and reduction were carried out using the Bruker software APEX2 and SAINT including SADABS [1]. Hydrogen atoms were placed in their geometrically idealized positions and constrained to ride on their parent atoms.

Comment

Flavonoids are secondary metabolites derived from plants. They are divided into subclasses of flavones, isoflavones, flavanones and flavonols depending on position of substituents and functional groups. Flavonols have a hydroxyl group at the 3-position of the flavone backbone and typical flavonol, such as azaleatin, kaempferol and quercetin have been isolated from natural sources and have shown broad spectrum of biological activities [6], [7], [8]. In addition, based on their abilities of the excited-state intramolecular proton transfer (ESIPT) phenomenon, flavonols have been used for novel fluorescent probe for the evaluation of enzyme activities, sensing and imaging [9]. Because it has been well established that the fluorescence abilities of flavonols are closely related to the angle between the 4H-chromene-4-one moiety and the attached aromatic ring [10], the title compound was synthesized and its crystal structure was determined.

In the title compound, the dihedral angle between dimethoxyphenyl ring and the 4H-chromenon skeleton is 69.63(2)° [11]. The methoxy group at ortho position is twisted from the ring by a dihedral angle of C10—C11—O4—C16 = −124.3(3)° and methoxy group at meta-position is almost co-planar with the ring [dihedral angle of C11—C12—O5—C17 = −169.8(1)°]. The hydroxyl group in chromen ring is slightly tilted from the plane of chromen fragment [dihedral angle of H3—O3—C2—C1 = −30.9(2)°] and intramolecular O—H⋯O hydrogen bond closes S(5) ring motif. In the crystal, pairs of O—H⋯O hydrogen bonds form inversion dimers with R22(10) loops and C—H⋯O interactions connect the dimers into chains along b-axis.

Acknowledgements

The author acknowledge financial support from the Basic Science Research Program (award No. NRF-2019R1F1A1058747) and the sabbatical program of Dongduk Women’s University.

References

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Received: 2020-02-19
Accepted: 2020-03-10
Published Online: 2020-04-09
Published in Print: 2020-06-25

©2020 Dongsoo Koh, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  77. Crystal structure of 5-methyl-3-phenyl-1-tosyl-1,2,3,4-tetrahydropyridine, C19H21NO2S
  78. Crystal structure of bis((3-chlorosalicylidene)-ethylenediaminato-κ4N,N′,O,O′)nickel (II), C16H12Cl2NiN2O2
  79. Crystal structure of (E)-N′-(2-chloro-6-hydroxybenzylidene)-4-hydroxybenzohydrazide — dihydrofuran-2(3H)-one (1/1), C18H17ClN2O5
  80. Crystal structure of bis((3-bromosalicylidene)-ethylenediaminato-κ4N,N′,O,O′) nickel (II), C16H12Br2NiN2O2
  81. Crystal structure of trimethylsulfoxonium tetrachloridocobaltate(II) [(CH3)3SO]2CoCl4
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