Home Physical Sciences Synthesis and crystal structure of 1,3-bis[(3,4-dicyano)phenoxy]-4,6-dinitro-benzene, C22H8N6O6
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Synthesis and crystal structure of 1,3-bis[(3,4-dicyano)phenoxy]-4,6-dinitro-benzene, C22H8N6O6

  • Ateyatallah Aljuhani EMAIL logo , Musa A. Said , David L. Hughes and Andrew N. Cammidge
Published/Copyright: June 13, 2018

Abstract

C22H8N6O6, monoclinic, P21/n (no. 14), a = 15.3939(6) Å, b = 7.3053(3) Å, c = 16.8282(6) Å, β = 91.567(3)°, V = 1891.74(13) Å3, Z = 4, Rgt(F) = 0.0510, wRref(F2) = 0.0867, T = 140(2) K.

CCDC no.: 1814684

Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Plate, pale yellow
Size:0.08 × 0.03 × 0.01 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.12 mm−1
Diffractometer, scan mode:Xcalibur 3/Sapphire3, Thin
slice φ and ω-scans
θmax, completeness:25°, >99%
N(hkl)measured, N(hkl)unique, Rint:23318, 3333, 0.085
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2315
N(param)refined:339
Programs:CrysAlisPRO [1], SHELX [2, 3] , WinGX and ORTEP [4, 5]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.57921(15)0.8096(3)0.20185(14)0.0199(6)
C20.53242(14)0.7043(3)0.14712(13)0.0193(5)
C30.53716(15)0.5142(3)0.15288(13)0.0190(6)
C40.59101(15)0.4339(3)0.20993(14)0.0212(6)
C50.63902(15)0.5404(3)0.26216(13)0.0189(6)
C60.63195(14)0.7311(3)0.26008(13)0.0182(5)
O20.48760(10)0.7927(2)0.08682(9)0.0232(4)
C210.40277(15)0.8442(3)0.09919(14)0.0196(6)
C220.36351(16)0.8123(3)0.17038(15)0.0200(6)
C230.27956(15)0.8749(3)0.18027(13)0.0198(6)
C240.23554(15)0.9672(3)0.11806(14)0.0202(6)
C250.27591(17)0.9935(3)0.04637(15)0.0241(6)
C260.35984(16)0.9330(3)0.03719(15)0.0220(6)
C2310.23842(15)0.8575(3)0.25549(14)0.0227(6)
N2310.20400(14)0.8493(3)0.31519(13)0.0314(5)
C2410.15022(17)1.0347(3)0.13437(14)0.0237(6)
N2410.08405(14)1.0852(3)0.15378(13)0.0352(6)
N30.48709(13)0.3912(3)0.09940(12)0.0267(5)
O310.42934(11)0.4568(2)0.05668(10)0.0315(4)
O320.50654(12)0.2285(2)0.10111(10)0.0379(5)
N50.70039(13)0.4432(3)0.31619(12)0.0261(5)
O510.75237(12)0.5349(2)0.35598(10)0.0360(5)
O520.69727(11)0.2753(2)0.31646(10)0.0344(5)
O60.67834(10)0.8492(2)0.30921(9)0.0239(4)
C610.65818(15)0.8576(3)0.38875(13)0.0195(6)
C620.58248(15)0.7833(3)0.41665(14)0.0196(6)
C630.56391(14)0.8028(3)0.49640(13)0.0178(5)
C640.62098(15)0.8988(3)0.54776(13)0.0197(6)
C650.69742(16)0.9701(3)0.51824(15)0.0224(6)
C660.71587(16)0.9497(3)0.43899(14)0.0217(6)
C6310.48516(16)0.7239(3)0.52597(13)0.0215(6)
N6310.42304(14)0.6595(3)0.54914(12)0.0308(5)
C6410.59660(16)0.9205(3)0.62918(16)0.0250(6)
N6410.57146(15)0.9336(3)0.69278(13)0.0365(6)
H10.5752(13)0.941(3)0.2002(11)0.016(6)*
H220.3917(13)0.754(3)0.2123(12)0.022(6)*
H250.2473(14)1.055(3)0.0023(13)0.023(6)*
H260.3892(14)0.952(3)−0.0117(13)0.017(6)*
H40.5943(15)0.304(3)0.2118(13)0.035(7)*
H620.5419(14)0.719(3)0.3833(12)0.023(6)*
H650.7371(14)1.032(3)0.5518(12)0.017(6)*
H660.7688(13)0.995(2)0.4190(11)0.010(6)*
Table 3:

Short intermolecular contacts, ‘weak hydrogen bonds’, in Ångstroms and degrees.

D–H⋯Ad(D–H)d(H⋯A)d(D⋯A)<(DHA)
C(22)–H(22)⋯N(241)#10.92(2)2.59(2)3.468(3)160.1(17)
C(26)–H(26)⋯O(32)#20.96(2)2.59(2)3.362(3)137.7(15)
C(62)–H(62)⋯N(241)#10.95(2)2.24(2)3.147(3)157.9(17)
C(65)–H(65)⋯N(231)#30.94(2)2.54(2)3.416(3)154.8(17)
C(25)–H(25)⋯O(51)#40.96(2)2.55(2)3.221(3)126.8(16)
  1. Symmetry transformations used to generate equivalent atoms:#1: ½ − x, y − ½, ½ − z; #2: 1 − x, 1 − y, −z; #3: 1 − x, 2 − y, 1 − z; #4: x − ½, 1½ − y, z − ½.

Source of material

1,5-Difluoro-2,4-dinitrobenzene (0.2 g, 1 mmol), 4-hydroxyphthalonitrile (0.3 g, 2.1 mmol) and potassium carbonate (0.274 g, 2.0 mmol) were added to acetone (7 mL) and the mixture was stirred at room temperature for 24 h. The solvent was removed and the residue redissolved in DCM. This was washed with water and the washings were extracted with DCM three times. The combined organic extracts were dried over MgSO4 and the solvent removed under reduced pressure. The product was purified by column chromatography (eluting with DCM). Recrystallization from acetone gave the title compound as a yellow crystalline solid (0.3 g, 66%). Mp. 197 °C; 1H NMR (500 MHz, Acetone) δ 9.04 (s, 1H), 8.14 (d, J = 8.8 Hz, 2H), 7.96 (d, J = 2.5 Hz, 2H), 7.80 (dd, J = 8.8, 2.5 Hz, 2H), 7.73 (s, 1H); 13C NMR (126 MHz, Acetone) δ 160.10, 153.48, 139.12, 137.36, 126.49, 124.56, 124.31, 118.82, 117.81, 116.11, 115.74, 112.56; IR (KBr, cm−1): 3047, 2240, 1630, 1536.

Experimental details

The structure was determined by the intrinsic phasing routines in the SHELXT program [2] and refined by full-matrix least-squares methods, in SHELXL [3]. Hydrogen atoms were included in idealized positions, but then allowed to refine freely. The figure was drawn with ORTEP [4, 5] .

Discussion

1,2-Cyano-containing benzene compounds or phthalonitriles are important precursors for phthalocyanine molecules [6] and have potential uses in composite matrices, adhesives, sensitizers and pigments [7], [8], [9], [10], [11]. As part of our ongoing work on the synthesis and study of phthalocyanine dimers, we targeted the title novel compound as a linker unit.

The synthesis of the bis-phthalonitrile is a straightforward procedure which can be achieved by the substitution reaction method, mixing 4-hydroxyphthalonitrile with 1,5-difluoro-2,4-dinitrobenzene in acetone in the presence of freshly ground potassium carbonate. After workup, purification over silica gel gave the target compound as the second fraction. The 1H-NMR spectrum shows singlets at ca 9.05 and 7.75 p.p.m. assigned to the two protons of the bridging benzene ring. This easily prepared bis-phthalonitrile is a potential candidate for making a variety of dimers of phthalocyanines which are unique in their electronic and optical properties [12].

The crystal structure of the title compound shows an approximately planar central C6H2(NO2)2(O)2 group. The two nitro groups are rotated about the C—N bonds by 10.93(14) and 9.05(14)°. The phthalonitrile groups are turned out of the central plane by rotation about the C(2)—O(2) and C(6)—O(6) bonds (by 88.05(14) and 68.16(11)°, respectively) and aligned so that the normals to these C6 rings are approximately perpendicular (85.82(7) and 77.29(7)°, respectively) to the normal to the central ring plane. The bond lengths and angles are within normal ranges and are comparable to those observed in similar structures [13]. Molecules are connected through ‘weak hydrogen bonds’, the shortest of which is for C(62)—H(62)⋯N(2411) where the H⋯N distance is 2.24(4) Å Table 3. The dicyanophenyl rings form a short-range stack and are close to parallel (the angles between their normals are zero or 10.53(11)°), but with, in some cases, limited overlap of the rings; shorter interactions within this stack include C(24)⋯C(644) at 3.40 Å.

References

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Received: 2018-02-01
Accepted: 2018-04-12
Published Online: 2018-06-13
Published in Print: 2018-08-28

©2018 Ateyatallah Aljuhani et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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  69. Crystal structure of methyl 4-(3,5-ditrifluoromethylphenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydroquinoline-3-carboxylate — water (2/1), C22H21F6NO3
  70. Crystal structure of 2-(4-bromophenyl)-2,3-dihydro-1H-perimidine, C17H13BrN2
  71. Crystal structure of (5-ethyl-2-(4-methoxyphenyl)-1,3-dioxan-5-yl)methanol, C14H20O4
  72. Crystal structure of (E)-N-(4-bromo-2-(1-(hydroxyimino)ethyl)phenyl)benzamide, C15H13BrN2O2
  73. Crystal structure of caffeinium triiodide – caffeine (1/1), C16H21I3N8O4
  74. Crystal structure of methyl 2-methyl-4-(3-methoxyphenyl)-5-oxo-1,4,5,6,7,8-hexahydroquinoline-3-carboxylate, C19H21NO4
  75. Crystal structure of (E)-3-(3,5-di-tert-butyl-4-hydroxyphenyl)-1-phenylprop-2-en-1-one, C23H28O2
  76. Crystal structure of 1,4-bis(2-azidoethyl)piperazine-1,4-diium dichloride, C8H18N8Cl2
  77. The crystal structure of dichlorido-(1,3-bis(2,6-dimethylphenyl)-1H-imidazol-2(3H)-ylidene)-(morpholine-κ1N)palladium(II), C23H29Cl2N3OPd(II)
  78. The crystal structure of 1-((5-chloro-3-methyl-1-phenyl-1H-pyrazole-4-yl)methyl)-1,3-diphenylurea, C24H21ClN4O
  79. Crystal structure of 6-(2-bromoacetamido)tetrahydro-2H-pyran-2,3,4,5-Tetrayl tetraacetate, C16H22BrNO10
  80. Crystal structure of 5-methylpyrazine-2-carbohydrazide, C6H8N4O
  81. Crystal structure of catena-poly[(μ2-5-(tert-butyl)isophthalato-κ4O,O′:O′′,O′′′)(-4′-(pyridin-4-yl)-2,2′:6′,2′′-terpyridine-κ3N,N′,N′′)manganese(II)], C32H28N4O5Mn
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