Home The crystal structure of 1-(4-carboxybutyl)-3-methyl-1H-imidazol-3-ium hexafluoridophosphate, C9H15F6N2O2P
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The crystal structure of 1-(4-carboxybutyl)-3-methyl-1H-imidazol-3-ium hexafluoridophosphate, C9H15F6N2O2P

  • Zhiwei Mao , Kehua Zhang , Lian Zhou and Wensheng Zou ORCID logo EMAIL logo
Published/Copyright: April 4, 2024

Abstract

C9H15F6N2O2P, triclinic, P1̄ (no. 2), a = 8.678(8) Å, b = 9.085(9) Å, c = 10.279(8) Å, α = 84.23(2), β = 79.02(2), γ = 62.103(14), V = 62.10(1) Å3, Z = 2, Rgt (F) = 0.0730, wRref (F 2) = 0.1663, T = 296 K.

CCDC no.: 2335880

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.19 × 0.16 × 0.12 mm
Wavelength:

μ:
Mo Kα radiation (0.71073 Å)

0.27 mm−1
Diffractometer, scan mode:

θ max, completeness:
Bruker D8 Venture, φ and ω

27.2°, 97 %
N(hkl)measured, N(hkl)unique, R int: 3889, 2911, 0.053
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 1284
N(param)refined: 247
Programs: Bruker [1], Olex2 [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
P1a 0.6864 (8) 0.6905 (6) 0.6787 (6) 0.070 (3)
P1Ab 0.6911 (8) 0.6845 (8) 0.6821 (5) 0.078 (3)
F1a 0.6865 (15) 0.5310 (11) 0.6461 (18) 0.173 (5)
F1Ab 0.8864 (11) 0.5407 (10) 0.6866 (16) 0.154 (4)
F2a 0.6875 (18) 0.8546 (13) 0.6797 (18) 0.215 (7)
F2Ab 0.5040 (13) 0.8177 (14) 0.6928 (19) 0.190 (6)
F3a 0.5742 (12) 0.778 (2) 0.5601 (10) 0.182 (5)
F3Ab 0.6201 (18) 0.5720 (18) 0.7808 (11) 0.186 (5)
F4a 0.8559 (12) 0.6384 (18) 0.5766 (13) 0.173 (5)
F4Ab 0.6627 (15) 0.6139 (18) 0.5684 (10) 0.144 (5)
F5a 0.5054 (10) 0.7541 (15) 0.7685 (6) 0.127 (4)
F5Ab 0.7060 (11) 0.7685 (14) 0.8059 (8) 0.115 (4)
F6a 0.7783 (16) 0.615 (2) 0.7978 (12) 0.203 (6)
F6Ab 0.7846 (19) 0.776 (2) 0.6014 (12) 0.174 (5)
O1 0.0895 (3) 0.2974 (3) 0.9392 (2) 0.0685 (9)
H1 0.012857 0.369700 0.989837 0.103*
O2 0.1877 (3) 0.4874 (4) 0.9003 (2) 0.0718 (9)
N1 1.1115 (3) −0.1327 (4) 0.6653 (3) 0.0555 (9)
N2 0.9185 (4) 0.0707 (4) 0.7950 (3) 0.0630 (10)
C1 1.2153 (5) −0.3003 (5) 0.6060 (4) 0.0766 (13)
H1A 1.298342 −0.297029 0.530799 0.115*
H1B 1.277792 −0.378605 0.670581 0.115*
H1C 1.136985 −0.333934 0.578310 0.115*
C2 0.9832 (4) −0.0913 (6) 0.7721 (4) 0.0653 (12)
H2 0.945801 −0.163497 0.821687 0.078*
C3 1.1267 (5) 0.0073 (6) 0.6216 (4) 0.0672 (12)
H3 1.205876 0.014433 0.549380 0.081*
C4 1.0071 (5) 0.1332 (6) 0.7011 (4) 0.0714 (12)
H4 0.988258 0.243076 0.693443 0.086*
C5 0.7743 (5) 0.1668 (6) 0.9046 (4) 0.0913 (17)
H5A 0.812516 0.121243 0.988852 0.110*
H5B 0.753829 0.281643 0.898684 0.110*
C6 0.6050 (5) 0.1634 (6) 0.9013 (4) 0.0744 (13)
H6A 0.519576 0.224798 0.976565 0.089*
H6B 0.625130 0.048741 0.912191 0.089*
C7 0.5241 (4) 0.2351 (5) 0.7758 (4) 0.0647 (12)
H7A 0.504503 0.349501 0.763386 0.078*
H7B 0.606991 0.172219 0.700082 0.078*
C8 0.3502 (4) 0.2306 (5) 0.7809 (4) 0.0713 (13)
H8A 0.316353 0.258292 0.693618 0.086*
H8B 0.367800 0.117990 0.802715 0.086*
C9 0.2016 (4) 0.3476 (5) 0.8797 (3) 0.0549 (11)
  1. aOccupancy: 0.507(9), boccupancy: 0.493(9).

1 Source of material

The compound was obtained using commercial 1-(4-carboxybutyl)-3-methyl-1H-imidazol-3-ium bromide through anion exchanging with potassium hexafluorophosphate. An amount of 0.01 mol 1-(4-carboxybutyl)-3-methyl-1H-imidazol-3-ium bromide, 0.01 mol potassium hexafluorophosphate and 10 mL distilled water were added to a 25 mL round-bottom flask. After being stirred by a magnetic stirrer for about 24 h, the mixture was transferred to a separatory funnel and extracted with 10 mL CH2Cl2, the organic phase was placed at room temperature and evaporated slow, finally the colorless crystals suitable for single crystal X-ray diffraction were obtained after about one week. 1H NMR (d-DMSO, 400 M) δ ppm: 9.905 (s, 1H), 7.742 (s, 1H), 7.680 (s, 1H), 4.164 (t, 2H), 3.839 (s, 3H), 2.256 (t, 2H), 1.797 (m, 2H), 1.459 (m, 2H).

2 Experimental details

All H atoms were located at their calculated positions, with O–H = 0.82 (carboxyl) Å and C–H = 0.92 (methylene), 0.93 (imidazole ring) or 0.96 (methyl) Å, and refined isotropically through a riding model, with U iso(H) = 1.5 U eq(O, C) for carboxyl and methyl H atoms and 1.2 U eq(C) for methylene H atoms. The hexafluorophosphate group is disordered over two positions with site occupancy ratio of 0.49:0.51 [3].

3 Comment

Ionic liquids (ILs) are the important functional materials, they can be applied in the industry and research fields of catalysis [4], extraction [5], liquid crystals and electrochemistry [6]. So focusing on the attentions from the researchers in decades, and many novel ILs with functional organics were designed and synthesized such as amino acid [7] and carboxylic acid [8]. In this work, the bromide anion of 1-(4-carboxybutyl)-3-methyl-1H-imidazol-3-ium bromide was exchanged by hexafluorophosphate group, then yielded hexafluorophosphate salt ionic liquid containing imidazole – carboxylic acid.

Single crystal X-ray diffraction clearly reveals that the Br anions are completely substituted by hexafluorophosphate groups without residual Br anions. In addition, there are no other guest molecules of solvents in the asymmetric unit of the structure. The carboxyl group connects imidazole ring by the twist-arrangement of four methylene groups. The bond distances between O atom and C atom are 1.254(6) and 1.289(5) Å for C5–O2 and C5–O1, respectively. They are close to each other, embodying the delocalized state for the C=O and C–O bonds of carboxyl, agreeing with others in the coordination polymer [9].

No classical hydrogen bonds exist in the structure of this compound. The hexafluorophosphate group and imidazole – carboxylic acid interact through C–H⋯F hydrogen bond with D or R2 2(8) style. On the other hand, two molecules of imidazole – carboxylic acid associate by O–H⋯O hydrogen bond R2 2(8) style from two carboxyls to form a dimer. Through those hydrogen bonds, the molecules are connected one by one to create a stable 3-dimensional network with ABAB fashion along b axis. The centroids distance between the centroid of one imidazole ring and the adjacent one is 8.878(8) Å, revealing that no π⋯π interactions are present in the crystals.


Corresponding author: Wensheng Zou, Key Laboratory of Functional Molecule Design and Interface Process, Anhui Jianzhu University, Hefei 230601, P.R. China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2024-02-29
Accepted: 2024-03-24
Published Online: 2024-04-04
Published in Print: 2024-06-25

© 2024 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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